BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G45610.1
Length=2027
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494424 jgi|Araly1|494424|fgenesh2_kg.8__240__AT5G45610.1 2362 0.0
Ahg359723 jgi|Araly1|359723|fgenesh1_pg.C_scaffold_801000001 917 0.0
> Ahg494424 jgi|Araly1|494424|fgenesh2_kg.8__240__AT5G45610.1
Length=1988
Score = 2362 bits (1279), Expect = 0.0
Identities = 1486/1588 (94%), Gaps = 5/1588 (0%)
Strand=Plus/Plus
Query 441 GGAGCAAGAATGTTCTCAGCTTAAGAAGGGGAAAAGCAAAGAAACAGAGTCTAGAAACTT 500
||| |||||||||||||||||||| |||||||||| |||||||| ||||||| ||||||
Sbjct 405 GGAACAAGAATGTTCTCAGCTTAAAAAGGGGAAAAACAAAGAAATGGAGTCTAAAAACTT 464
Query 501 GTGTGCTGATGATAATAGAGGGCAATGTTCTACGGTTCATGCTTCTAAGAGGATAGACTT 560
|||||| |||||||| ||||||||||||||| ||||||||||||||||| | ||||||
Sbjct 465 GTGTGC---TGATAATAAAGGGCAATGTTCTACAGTTCATGCTTCTAAGAGAACAGACTT 521
Query 561 GGAACCAGATGTCGCAACTTCTTCAGTAAATCATCGAGAAAACGACTCTAGGATGGCGTT 620
|||||||||||| |||||||||||||||| |||||||||||| || |||| ||||| |||
Sbjct 522 GGAACCAGATGTTGCAACTTCTTCAGTAATTCATCGAGAAAATGAATCTACGATGGGGTT 581
Query 621 AGATGATAAAAGAAGCTTCAAGACCACTGGTGTTCAGGCTGATGTGGCCAATCATTCTGA 680
||||||||||| ||||||||||||| | ||||||||||| ||| |||||||| || ||||
Sbjct 582 AGATGATAAAAAAAGCTTCAAGACCGCCGGTGTTCAGGCGGATCTGGCCAATAATGCTGA 641
Query 681 CCTTTCAAAGAAACTGCTAGACATCTGGCGCACCTCAAATTATCAAGATCCGAGGAAAAA 740
||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 642 CCTTTCAAAGAAACTTCTAGATATCTGGTGCACCTCAAATTATCAAGATCCGAGGAAAAA 701
Query 741 TCTAATCTCAGAGTTGCTACTGGCTTGTTCAACAGATCTCCAGATTCTCTTTAGTTTTAT 800
|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 702 TCTAATCTCAGAGTTGCTACTGGCTTTTTCAACAGATCTCCAGATTATCTTTAGTTTTAT 761
Query 801 GAAAATCAGTACGCCTCCTCAAGAACTTAACAAACAGGAAGCCAAAACCTCGTCAGATAG 860
|||||||||||||||||| |||||| || ||||||| ||||||||||||||||||||||
Sbjct 762 GAAAATCAGTACGCCTCCCCAAGAAATTGACAAACACGAAGCCAAAACCTCGTCAGATAT 821
Query 861 ACAATCTTCTAAAGCCTTAGAATCTGAGAAAGTGTATCAATTATACTCTGCAGTAACAAA 920
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||
Sbjct 822 ACAATCTTCTAAAGCCTTAGAATCTGAAAAAGTGTATCATTTATACTCTGCAGTAACCAA 881
Query 921 GATCAGCTATGGGTTTGTAAATTTGAAGACCTTGGTTGAACCACTACTTGATCTTTGTAA 980
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 882 GATCAGCTATGGGTTTGTAAATTTGAAGTCCTTGGTTGAACCACTACTTGATCTTTGTAA 941
Query 981 AGCGGAAACTGCCGTTCTTGTTCATAGATCTCTGCGTGTACTACATGTGCTGTTGGAACA 1040
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 942 AGCGGAAACTGCCGTTCTTGTTCATAGATCTCTGCGTGTACTACATGTCCTGTTGGAACA 1001
Query 1041 TATATGTGGTGATGAAAAGAGATTTGAAGCCAGTTGGGATGCAAACTGGCATTCTCTGTT 1100
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1002 TATATGTGGTGTTGAAAAGAGATTTGAAGCCAGTTGGGATGCAAACTGGCATTCTCTGTT 1061
Query 1101 TAAATTGATGAATCAAATTGCTAGTAAAAGAACCGAACAGGATGTGAAACAGGAAGCATT 1160
| |||||||||||||||||||||| | |||||||||| |||||||||| | |||||||||
Sbjct 1062 TGAATTGATGAATCAAATTGCTAGCAGAAGAACCGAAGAGGATGTGAAGCTGGAAGCATT 1121
Query 1161 GTCGATAATGAACATAATCGTGATGAGCACCGATGCTTATACTGCTAGAGAAAGTTTTGT 1220
|||||||||||||||||||||||||||||| ||||||||||| || ||||||| ||||||
Sbjct 1122 GTCGATAATGAACATAATCGTGATGAGCACTGATGCTTATACCGCGAGAGAAACTTTTGT 1181
Query 1221 CTCCAAGGAAGTGTTTGAAAGCATTTCATTACTTTTAAGAAAAGAAGGTGGCTTACATGT 1280
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1182 CTCCAAGGAAGTGTTTGAGAGCATTTCATTACTTTTAAGAAAAGAAGGTGGCTTACATGT 1241
Query 1281 ACGGAAAGAAGCTATTCATCTTTTTTACTTGCTACTCAACTGTCCTAAACTATACGATAC 1340
||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 1242 ACGGAAAGAAGCTATTCATCTTTATTACTTGCTACTCAACTGCCCTAAACTATACGATAG 1301
Query 1341 ATTTGATTCTCTCCATGAGGAAAAGAACTCCTCTGATACTGAAAACGATAGTGAAGGAAA 1400
|||||||||||||||||||||||||||||| || |||||||||||||||||||||| |||
Sbjct 1302 ATTTGATTCTCTCCATGAGGAAAAGAACTCTTCAGATACTGAAAACGATAGTGAAGTAAA 1361
Query 1401 TTTCTTTGCTTTGGAAGCATTTGGTAAGATCTTTGAAGGCTTAGCAGATTGTTTGACTTC 1460
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1362 TCTCTTTGCTACAGAAGCATTTGGTAAGATCTTTGAAGGCTTAGCAGATTGTTTGACTTC 1421
Query 1461 TCCCAGAAAGACATCAGAGGATCTGGAACTGTGTAGGAATGTAATAATGATCTTGGCTCT 1520
|||||||||||||||||||||||||||| | ||| |||||||||||||||||||||| ||
Sbjct 1422 TCCCAGAAAGACATCAGAGGATCTGGAATTATGTCGGAATGTAATAATGATCTTGGC-CT 1480
Query 1521 -AGCAGCTTCTTCAGGAAACTCTGGCTATGAACTACTCTCAAGTCACAAGCTACCTCAAG 1579
||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||
Sbjct 1481 TAGCAGCTTCTTCAGGAAACTCTGGCTATGAACTGCTCTCAAATCACAAACTACCTCAAG 1540
Query 1580 ACAGCAGCTTCTTAATGCTGATACTTCATCTTTTAGTTGCTGAAATAGACTCGGAATCAA 1639
| | || ||| |||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 1541 ATACCAACTTTTTAATGGTGATACTTCATCTTTTAGTTGCAGAAATAGACTCGGAATCAA 1600
Query 1640 CAGAATTTCATCCAAAAGCGGAAATCTTCAAAGCAAGAACACTATTGATGAGAGAGATAT 1699
|||| |||| |||||||||||||||||| ||||| || ||| |||||||||||||||||
Sbjct 1601 CAGAGTTTCGTCCAAAAGCGGAAATCTTGAAAGCGAGGACATTATTGATGAGAGAGATAC 1660
Query 1700 TGATATTACTAAACAGACTTGTCTCTGGCTTGTCAAGCTCTGCTACTATTCTAAAGGAAC 1759
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1661 TGATATTACTAAACAGACTTGTCTCTGGCTTGTCAAGCTCTGCTACTATTCTAAAAGAAC 1720
Query 1760 TAACAACGAGCAGAGACATGGCGAGTCTAACGGTTGATGCAGCCACAAGATTATCCCGTA 1819
|||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1721 TAACAAAGAGCAGAGACATGGCGAGTCTAACAGTTGATGCAGCCACAAGATTATCCCGTA 1780
Query 1820 AAAGAAACTTACTTGGAAAACCTGAAAGCAGTGTTGAGAGAATGAGGAATACCGAAATCA 1879
||||||||||||| ||| ||||||||| ||||||| |||||||||||||||| |||||||
Sbjct 1781 AAAGAAACTTACTAGGACAACCTGAAAACAGTGTTCAGAGAATGAGGAATACAGAAATCA 1840
Query 1880 TGGATTTAGCCCGCATTTTCAAGAAACGGGTTTTCGCCTTCTTAGGTGACAATACTATAT 1939
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 1841 TGGATTTAGCCCGCATTTTCAAGAGACGGGTTTTCGCCTTCTTAGGCGACAATACTATAT 1900
Query 1940 GAACACATACATTATCGGTGTTGTTGAGTTCATTCAGTTCTCTTTTTTGAGCGTAAATAA 1999
|| ||| |||||||||| ||||||||||||||| ||||||||||||||||| || | ||
Sbjct 1901 AAATACAAACATTATCGGGGTTGTTGAGTTCATTGAGTTCTCTTTTTTGAGCATAGAGAA 1960
Query 2000 CTGCTAATTTTGATTGAAGGAGCATAGT 2027
||||||||||||||||||||||||||||
Sbjct 1961 CTGCTAATTTTGATTGAAGGAGCATAGT 1988
Score = 361 bits (195), Expect = 1e-98
Identities = 292/334 (87%), Gaps = 26/334 (8%)
Strand=Plus/Plus
Query 88 CGCCCCCTACCTCCTCCGTATCTTCCAACGTTTCTACCGGCTCCTCC-G---C------- 136
||||||||||||||||||| ||||||||||||| ||||||||||||| | |
Sbjct 79 CGCCCCCTACCTCCTCCGTCTCTTCCAACGTTTGTACCGGCTCCTCCGGTATCGGAGATG 138
Query 137 -C-A--TCGACGA--A-GATTTCATCGTCTTTATCTCACCCTATGCAGTTACAATCCTCA 189
| | |||||| | |||||||||| | |||||||||||||||| |||||||||||
Sbjct 139 ACGACGACGACGACGATGATTTCATCGAATGTATCTCACCCTATGCAATTACAATCCTCC 198
Query 190 GCGGGACAACAACGGAAACAAATTCAAGTTCCTGATCCTTTCTTAAGCTATTCTCCGCCG 249
||||||||| ||||||||||||||||||||| |||||||||| | |||||||||||||||
Sbjct 199 GCGGGACAAAAACGGAAACAAATTCAAGTTCGTGATCCTTTCATCAGCTATTCTCCGCCG 258
Query 250 AGAGAACTCTCTCAAAGAGTAGTAAGCGGTTTCAATGACGCGTTAATGGATTACTCTAAC 309
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 259 AGAGAACTCTCTCAAAGAGTAG---GCGGTTTCAATGACTCGTTAATGGATTACTCTAAC 315
Query 310 TCTACTGTTGTTACTGCTGCTAAACCTATCTCTCCGA-CTACTTCGAATCGTCGCTGTGA 368
||||| | ||||||||||||||||| |||||||||| || ||||||||||| |||||||
Sbjct 316 TCTAC-G--GTTACTGCTGCTAAACCAATCTCTCCGAACT-CTTCGAATCGTTGCTGTGA 371
Query 369 TAGTGAGAAAGATCTCGAAATTGATCGCTTAAAG 402
||||||||||||||||||||||||||| ||||||
Sbjct 372 TAGTGAGAAAGATCTCGAAATTGATCGATTAAAG 405
> Ahg359723 jgi|Araly1|359723|fgenesh1_pg.C_scaffold_801000001
Length=621
Score = 917 bits (496), Expect = 0.0
Identities = 578/618 (94%), Gaps = 3/618 (0%)
Strand=Plus/Plus
Query 1324 CCTAAACTATACGATACATTTGATTCTCTC-CATGAGGAAAAGAACTCCTCTGATACTGA 1382
|||||||||||||||| ||||||||||||| ||||||||||||||||| || ||||||||
Sbjct 3 CCTAAACTATACGATAGATTTGATTCTCTCGCATGAGGAAAAGAACTCTTCAGATACTGA 62
Query 1383 AAACGATAGTGAAGGAAATTTCTTTGCTTTGGAAGCATTTGGTAAGATCTTTGAAGGCTT 1442
|||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||
Sbjct 63 AAACGATAGTGAAGTAAATCTCTTTGCTACAGAAGCATTTGGTAAGATCTTTGAAGGCTT 122
Query 1443 AGCAGATTGTTTGACTTCTCCCAGAAAGACATCAGAGGATCTGGAACTGTGTAGGAATGT 1502
|||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||
Sbjct 123 AGCAGATTGTTTGACTTCTCCCAGAAAGACATCAGAGGATCTGGAATTATGTCGGAATGT 182
Query 1503 AATAATGATCTTGGCTCT-AGCAGCTTCTTCAGGAAACTCTGGCTATGAACTACTCTCAA 1561
||||||||||||||| || ||||||||||||||||||||||||||||||||| |||||||
Sbjct 183 AATAATGATCTTGGC-CTTAGCAGCTTCTTCAGGAAACTCTGGCTATGAACTGCTCTCAA 241
Query 1562 GTCACAAGCTACCTCAAGACAGCAGCTTCTTAATGCTGATACTTCATCTTTTAGTTGCTG 1621
|||||| ||||||||||| | || ||| |||||| |||||||||||||||||||||| |
Sbjct 242 ATCACAAACTACCTCAAGATACCAACTTTTTAATGGTGATACTTCATCTTTTAGTTGCAG 301
Query 1622 AAATAGACTCGGAATCAACAGAATTTCATCCAAAAGCGGAAATCTTCAAAGCAAGAACAC 1681
|||||||||||||||||||||| |||| |||||||||||||||||| ||||| || |||
Sbjct 302 AAATAGACTCGGAATCAACAGAGTTTCGTCCAAAAGCGGAAATCTTGAAAGCGAGGACAT 361
Query 1682 TATTGATGAGAGAGATATTGATATTACTAAACAGACTTGTCTCTGGCTTGTCAAGCTCTG 1741
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 362 TATTGATGAGAGAGATACTGATATTACTAAACAGACTTGTCTCTGGCTTGTCAAGCTCTG 421
Query 1742 CTACTATTCTAAAGGAACTAACAACGAGCAGAGACATGGCGAGTCTAACGGTTGATGCAG 1801
||||||||||||| |||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 422 CTACTATTCTAAAAGAACTAACAAAGAGCAGAGACATGGCGAGTCTAACAGTTGATGCAG 481
Query 1802 CCACAAGATTATCCCGTAAAAGAAACTTACTTGGAAAACCTGAAAGCAGTGTTGAGAGAA 1861
||||||||||||||||||||||||||||||| ||| ||||||||| ||||||| ||||||
Sbjct 482 CCACAAGATTATCCCGTAAAAGAAACTTACTAGGACAACCTGAAAACAGTGTTCAGAGAA 541
Query 1862 TGAGGAATACCGAAATCATGGATTTAGCCCGCATTTTCAAGAAACGGGTTTTCGCCTTCT 1921
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 542 TGAGGAATACAGAAATCATGGATTTAGCCCGCATTTTCAAGAGACGGGTTTTCGCCTTCT 601
Query 1922 TAGGTGACAATACTATAT 1939
|||| |||||||||||||
Sbjct 602 TAGGCGACAATACTATAT 619
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76218580245
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5