BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G45620.1
Length=1514
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494422 jgi|Araly1|494422|fgenesh2_kg.8__238__AT5G45620.1 2015 0.0
Ahg946280 jgi|Araly1|946280|scaffold_702509.1 1358 0.0
> Ahg494422 jgi|Araly1|494422|fgenesh2_kg.8__238__AT5G45620.1
Length=1381
Score = 2015 bits (1091), Expect = 0.0
Identities = 1206/1260 (96%), Gaps = 13/1260 (1%)
Strand=Plus/Plus
Query 54 AGATCGAGAGAATTCGC-AAACTCGTTTCTTCATTCGTCTTCG----T-CT--TT-CGCC 104
|||||||||| ||||| |||||||||||||| |||||||||| | || || ||||
Sbjct 19 AGATCGAGAGCTTTCGCAAAACTCGTTTCTTCCTTCGTCTTCGTCTCTGCTGCTTCCGCC 78
Query 105 ATGGCTGCTCTACAATACTTGGAATCTCTGAAAAATACGCATCCAGAGCTCGGCGAATGG 164
||||||||||| |||||||||||||||||||||||| | |||||||||||||| ||||||
Sbjct 79 ATGGCTGCTCTTCAATACTTGGAATCTCTGAAAAATGCCCATCCAGAGCTCGGTGAATGG 138
Query 165 TACAATTCCCTTGCAGATCTGTATCAGAAAAAGCTCTGGCATCAACTCACCCTTAAGCTC 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 139 TACAATTCCCTTGCAGATCTGTATCAGAAAAAGCTCTGGCATCAACTCACCCTTAAGCTC 198
Query 225 GAACAGTTCATCGCTCTCGCTGTCTTTCAGGCTGGTGATGCTTTGATTCAGTTCTATCAC 284
||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||
Sbjct 199 GAACAGTTCATCGCTCTCGCTGTCTTTCAGGCTGGAGATGCTCTAATTCAGTTCTATCAC 258
Query 285 AATTTCATCACTGACTTTGAGACGAAGATCAATCTTCTGAAGCTTGCGCATTTTGCTGTG 344
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 259 AATTTCATCACTGACTTTGAGACGAAGATCAATCTTCTGAAGCTTGCACATTTTGCTGTG 318
Query 345 GTGGTCTCTCGACAGTACTCTGAGAAAGAAGCTGCAGTTAGCTATCTTGAAAGCGTGATT 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 319 GTGGTCTCTCGACAGTACTCTGAGAAAGAAGCTGCAGTTAGCTATCTTGAAAGCGTGATT 378
Query 405 GAGAAACTTAGAGCTACTAAAGAGCCTAGGATTACTGAACCAATCATTTATATTGAAACA 464
||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 379 GAGAAACTTAGAGCTACTAAAGAGCCTCGGATTACTGAACCGATCATTTATATTGAAACA 438
Query 465 CAAAAAGCTTTATTCAAGCTTGAGCAAGGTGATCAGAAGGAGTGCaaaaaaaTCTTGGAC 524
||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 439 CAAAAAGCTCTGTTCAAGCTTGAGCAAGGTGATCAGAAGGAGTGCAAGAAAATCTTGGAT 498
Query 525 GATGGAAAGAGCTCTCTTGATAGTATGACTGACATTGATCCATCAGTCTATGCCAACTTC 584
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 499 GATGGAAAGAGCTCTCTTGACAGTATGACTGACATTGATCCATCGGTCTATGCCAACTTC 558
Query 585 TATTGGGTGTCTTCTCAGTACCATAAGTGCCGTCAAGAATTTTCTGATTTCTACAAAAGT 644
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 559 TATTGGGTGTCTTCTCAGTACCATAAGTCCCGTCAAGAATTTTCTGATTTCTACAAAAGT 618
Query 645 GCTCTGCTTTATCTTGCATACACGTCTGTGGAGGACCTTTCAGAATCGTTTAAGCTGGAT 704
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 619 GCTCTACTTTATCTTGCATACACGTCTGTGGAGGACCTCTCAGAATCGTTTAAGCTGGAT 678
Query 705 TTGGCTTTCGATTTGTCACTATCAGCTCTACTTGGGGAGAACATCTATAACTTTGGGGAA 764
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 679 TTGGCTTTCGATTTGTCACTTTCAGCTCTACTTGGGGAGAACATCTATAACTTTGGGGAA 738
Query 765 CTGTTAGCCCATCCCATTTTGAAAAGTCTCCTTGGAACAAATGTGGAATGGCTCTACCAC 824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 739 CTGTTAGCCCATCCCATTTTGAAAAGTCTCCTTGGAACAAATGTGGAATGGCTCTACCAC 798
Query 825 ATTCTACAGGCATTCAACCATGGTGATTTAGTTCAGTATCAAGAACTATGCCGTGTGCAC 884
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 799 ATTCTACAGGCATTCAATCATGGTGATTTAGTTCAATATCAAGAACTATGCCGTGTGCAC 858
Query 885 AACGCATCCTTGATTGCTCAACCAGCACTTGTTGAGAACGAGAAGAAGCTTTTGGAAAAG 944
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 859 AACGCATCCTTGATTGCGCAACCAGCACTGGTTGAGAACGAGAAGAAGCTTTTGGAAAAG 918
Query 945 ATCAACATTCTCTGCCTTATCGAGATCATCTTCAGCCGACCCGCTGAAGATAGAACCATT 1004
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 919 ATCAACATTCTCTGCCTTATCGAGATCATCTTCAGCCGACCTGCTGAAGATAGAACCATT 978
Query 1005 CCTTTGAGCATCATCGCTGAGCGTACTAAACTTTCCATTGAAGATGTTGAGCACCTTCTC 1064
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 979 CCTTTGAGTATCATCGCTGAGCGTACTAAACTTTCTATTGAAGATGTTGAGCACCTTCTC 1038
Query 1065 ATGAAGAGCCTTTCTGTGCATTTGATCGAGGGCATCATAGACCAAGTGAACGGAACAATT 1124
||||||||||||||||||||| | || ||||||||||||||||||||||| |||||| ||
Sbjct 1039 ATGAAGAGCCTTTCTGTGCATCTAATTGAGGGCATCATAGACCAAGTGAATGGAACAGTT 1098
Query 1125 TATGTCTCATGGGCGCAACCGAGAGTACTAGGGATTCCACAGATCAAGGCTTTGAGGGAT 1184
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1099 TACGTCTCATGGGCACAACCGAGAGTACTAGGGATTCCACAGATCAAGGCTTTGAGGGAT 1158
Query 1185 CAATTAGACAGTTGGGTTGACAAAGTTCACACCACTTTACTATCTGTTGAAGCCGAGACA 1244
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1159 CAATTGGACAGTTGGGTTGACAAAGTTCACACCACTTTGCTATCTGTTGAAGCCGAGACA 1218
Query 1245 CCAGATCTTGTTGCAGCATAAGAGAA-AAGAAAACCTT-CTTCCTCCTTTTGAAGCTACT 1302
|||||||||||||| || ||||| || || |||||||| |||||||||||||||||||||
Sbjct 1219 CCAGATCTTGTTGCCGCTTAAGA-AAGAA-AAAACCTTTCTTCCTCCTTTTGAAGCTACT 1276
> Ahg946280 jgi|Araly1|946280|scaffold_702509.1
Length=1202
Score = 1358 bits (735), Expect = 0.0
Identities = 1030/1173 (88%), Gaps = 18/1173 (2%)
Strand=Plus/Plus
Query 102 GCCATGGCTGCTCTACAATA-CTTGGAATCTCTGAAAAATACGCATCCAGAGCTCGGCGA 160
||||||||||||||||| || ||| ||||| | ||||||| |||| |||||||| |||||
Sbjct 18 GCCATGGCTGCTCTACAGTACCTT-GAATCGCAGAAAAATGCGCACCCAGAGCTTGGCGA 76
Query 161 ATGGTACAATTCCCTTGCAGATCTGTATCAGAAAAAGCTCTGGCATCAACTCACCCTTAA 220
||||||||||| || ||||||||||| ||||| ||||| |||||||| ||||| |||||
Sbjct 77 GTGGTACAATTCGCTCGCAGATCTGTACCAGAAGAAGCTTTGGCATCAGCTCACTCTTAA 136
Query 221 GCTCGAACAGTTCATCGCTCTCGCTGTCTTTCAGGCTGGTGATGCTTTGATTCAG-TTCT 279
|||||| |||||||| |||||| |||||||||||||||| |||||||| || ||| || |
Sbjct 137 GCTCGAGCAGTTCATTGCTCTCTCTGTCTTTCAGGCTGGAGATGCTTTAATACAGCTT-T 195
Query 280 ATC-ACAATTTCATCACTGACTTTGAGACGAAGATCAATCTTCTGAAGCTTGCGCATTTT 338
| | ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 196 A-CAACAATTTCATCACTGACTTTGAGACGAGGATCAACCTTCTGAAGCTTGCGCATTTC 254
Query 339 GCTGTGGTGGTCTCTCGACAGTACTCTGAGAAAGAAGCTGCAGTTAGCTATCTTGAAAGC 398
|| || || ||||| || |||||| |||||||||||||||| ||||| ||||||||| |
Sbjct 255 GCGGTTGTAGTCTCCCGGCAGTACCCTGAGAAAGAAGCTGCGGTTAGTTATCTTGAAGGA 314
Query 399 GTGATTGAGAAA-CTTAGAGCTACTAAAGAGCCTAGGATTACTGAACCAATCATTTATAT 457
|||||||| ||| |||| ||||||||||||| | ||||| | ||| ||||| | |||||
Sbjct 315 GTGATTGA-AAAGCTTAAAGCTACTAAAGAGTCAAGGATAAATGAGCCAATTAGCTATAT 373
Query 458 TGAAACACAAAAAGCTTTATTCAAGCTTGAGCAAGGTGATCAGAAGGAGTGCaaaaaaaT 517
|||||||||| |||||| |||||||||||||||||||| |||||||| ||||| |||||
Sbjct 374 AGAAACACAAATAGCTTTGTTCAAGCTTGAGCAAGGTGACCAGAAGGAATGCAAGAAAAT 433
Query 518 CTTGGACGATGGAAAGAGCTCT-CTTGATAGTATGACTGACATTGATCCATCAGTCTATG 576
||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||
Sbjct 434 CTTGGACGATGGAAAAAGCT-TGCTTGATAGTATGACTGACATTGATCCATCAGTCTATG 492
Query 577 CCAACTTCTATTGGGTGTCTTCTCAGTACCATAAGTGCCGTCAAGAATTTTCTGATTTCT 636
||||||||| |||||||||||||||||||||||| | ||||||||| |||||||| ||||
Sbjct 493 CCAACTTCTTTTGGGTGTCTTCTCAGTACCATAAATTCCGTCAAGAGTTTTCTGAGTTCT 552
Query 637 ACAAAAGTGCTCTGCTTTATCTTGCATACACGTCTGTGGAGG-ACCTTTCAGAATCGTTT 695
| |||| |||||| ||||| ||||| || |||||||||||| || | || ||||| ||
Sbjct 553 ATAAAAATGCTCTTCTTTACCTTGCTTATACGTCTGTGGAGTCAC-TCTCGGAATCATTC 611
Query 696 AAGCTGGATTTGGCTTTCGATTTGTCACTATCAGCTCTACTTGGGGAGAACATCTATAAC 755
||||||||||||||||| |||||||| || |||||||||||||| || || |||||||||
Sbjct 612 AAGCTGGATTTGGCTTTTGATTTGTCGCTTTCAGCTCTACTTGGAGATAATATCTATAAC 671
Query 756 TTTGGGGAACTGTTAGCCCATCCCATTTTGAAAAGTCTCCTTGGAACAAATGTGGAATGG 815
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 672 TTTGGGGAACTGTTAGCCCATCCAATTTTGAAAAGTCTGCTTGGAACAAATGTGGAATGG 731
Query 816 CTCTACCACATTCTACAGGCATTCAACCATGGTGATTTAGTTCAGTATCAAGAACTATGC 875
|| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 732 CTTTACCACATTCTACAAGCATTCAACCATGGTGATTTAGTTCAGTATCAAGAACTCTGT 791
Query 876 CGTGTGCACAACGCATCCTTGATTGCTCAACCAGCACTTGTTGAGAACGAGAAGAAGCTT 935
||||||||||||||||| |||| ||||||||| ||||| |||||||| |||||||| ||
Sbjct 792 CGTGTGCACAACGCATCATTGAGTGCTCAACCCGCACTGGTTGAGAATGAGAAGAAACTA 851
Query 936 TTGGAAAAGATCAACATTCTCTGCCTTATCGAGATCATCTTCAGCCGACCCGCTGAAGAT 995
|| || ||||||||||||||||||||||| |||||||| ||||||||||| |||||||||
Sbjct 852 TTAGAGAAGATCAACATTCTCTGCCTTATTGAGATCATTTTCAGCCGACCTGCTGAAGAT 911
Query 996 AGAACCATTCCTTTGAGCATCATCGCTGAGCGTACTAAACTTTCCATTGAAGATGTTGAG 1055
|| ||||| |||||||| |||| || ||||||||||||||||| || |||||||||||
Sbjct 912 AGGACCATACCTTTGAGTGTCATTGCCGAGCGTACTAAACTTTCAATCGAAGATGTTGAA 971
Query 1056 CACCTTCTCATGAAGAGCCTT-TCTGTGCATTTGATCGAGGGCATCAT-AGACCAAGTGA 1113
|||||||||||||||||| || |||||||| ||||| ||||| || || ||| || ||||
Sbjct 972 CACCTTCTCATGAAGAGC-TTATCTGTGCACTTGATAGAGGGAAT-ATTAGATCAGGTGA 1029
Query 1114 ACGGAACAATTTATGTCTCATGGGCGCAACCGAGAGTACTAGGGATTCCACAGATCAAGG 1173
| |||||| | || ||||||||||||||||||| || |||||||||| |||||||||
Sbjct 1030 ATGGAACAGTATACATCTCATGGGCGCAACCGAGGGTGTTAGGGATTCCGCAGATCAAGT 1089
Query 1174 CT-TTGAGGGATCAATTAGACAGTTGGGTTGACAAAGTTCACACCACTTTACTATCTGTT 1232
| ||||||||||| ||||||||||||| || || |||||||| || || ||||||||
Sbjct 1090 -TATTGAGGGATCAGCTAGACAGTTGGGTCGATAAGGTTCACACTACATTGTTATCTGTT 1148
Query 1233 GAAGCCGAGACACCAGATCTTGTTGCAGCATAA 1265
|| ||||||||||| |||||||||||||| |||
Sbjct 1149 GAGGCCGAGACACCTGATCTTGTTGCAGCTTAA 1181
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56678284560
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5