BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G45630.1

Length=515
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg494421 jgi|Araly1|494421|fgenesh2_kg.8__237__AT5G45630.1          507    4e-143


> Ahg494421 jgi|Araly1|494421|fgenesh2_kg.8__237__AT5G45630.1
Length=383

 Score =  507 bits (274),  Expect = 4e-143
 Identities = 358/396 (90%), Gaps = 16/396 (4%)
 Strand=Plus/Plus

Query  51   TTGATATTACAATAATGTCAGAAGAATTTCAAGAATCCGACATTATATTTTCCGACCAAT  110
            ||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||
Sbjct  1    TTGATATTACAATAATGTCGGAAGAATTTCAAGAATCAGATATTATATTTTCCGACCAAT  60

Query  111  CCAAAATATCAACTTCTAGCCGATATACTAAACTCTATAACTCAAGAAACGACGAGAAGA  170
            || ||| ||   |  | |   || | |||||||||| |||| ||||||||||||||||||
Sbjct  61   CC-AAA-AT---C--C-A---GA-AAACTAAACTCTTTAACACAAGAAACGACGAGAAGA  108

Query  171  AGGGTACAAGACGGCATGAGACGGCGGAGAAAACATCTCCGGTGAGAATTCCGACGAATA  230
            |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct  109  AGGGTACAAGACGGCAGGTGACGGCGGAGAAAACATCTCCGGTGAGAATTCCGACGAATA  168

Query  231  ATTTCCGATGTTTGGAATGGGACACGACGGAGGAGGAGGATGA---TAAGACTCCTCCAC  287
            ||||||||| |||  ||||||||||| ||||||||||||| ||   ||||||||||||||
Sbjct  169  ATTTCCGATATTTTAAATGGGACACGGCGGAGGAGGAGGAAGAAGATAAGACTCCTCCAC  228

Query  288  ATGTAATAATCGAACGACGAATGAAAGAGCAAATTGCGTTTTCCGCTTGTACTTTAAAAG  347
            ||||||| |||||| || |||||||||||||||| |||||||||| ||||||||||||||
Sbjct  229  ATGTAATTATCGAAAGAAGAATGAAAGAGCAAATAGCGTTTTCCGTTTGTACTTTAAAAG  288

Query  348  GAAGAGACTTGAGCCGTCACCGGAACTCCGTTCTTAGGATGACCGGTTTTTTAGAAGCTT  407
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  289  GAAGAGACTTGAGCCGTCACCGGAACTCCGTTCTTAAGATGACCGGTTTTTTAGAAGCTT  348

Query  408  AATTTATTTAACCGGCCGGTTCAGTTTGTTTTATTT  443
             ||| | |||||||||||||||| ||||||||||||
Sbjct  349  GATT-ACTTAACCGGCCGGTTCAATTTGTTTTATTT  383



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18734394199


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5