BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G45640.1
Length=2265
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494420 jgi|Araly1|494420|fgenesh2_kg.8__236__AT5G45640.1 2231 0.0
Ahg494419 jgi|Araly1|494419|fgenesh2_kg.8__235__AT5G45650.1 514 1e-144
> Ahg494420 jgi|Araly1|494420|fgenesh2_kg.8__236__AT5G45640.1
Length=2394
Score = 2231 bits (1208), Expect = 0.0
Identities = 1329/1389 (96%), Gaps = 2/1389 (0%)
Strand=Plus/Plus
Query 108 TAGCATCAATGGCTTCGCGGCTGAGCTAACACCGGATCAAGCCTCTAGACTCAAAGAACT 167
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 210 TAGCATCAATGGCTTCGCGGCTGAGCTAACACTGGACCAAGCCTCTAGACTCAAAGAACT 269
Query 168 CAAAGAAGTTGTATCGGTATTCAAGAGCGATCCGAGAAAGTATAAGATCCATACGACAAG 227
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 270 CAAAGGAGTTATATCGGTATTCAAGAGCGATCCGAGAAAGTATAAGATCCATACGACAAG 329
Query 228 ATCATGGGAATTTGTAGGGTTAAAGGAGGAAGAAGGCGAAGATTATCGTAGTGACGGTGA 287
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 330 ATCGTGGGAATTTGTAGGGTTAAAGGAGGAAGAAGGCGAAGATTATCGTAGTGATGGTGA 389
Query 288 TGCCCCACGTCACAAATATGATGTAAATGACCGGTTTCGTGTCGGGAGAAAGTTCTTGAA 347
|||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||
Sbjct 390 TGCCCCACGTCACAAATATGATGTGAGTGACCGGTTTCGTGTCGGAAGAAAGTTCTTGAA 449
Query 348 GAATGCAAAACACGGCGATGGGGTCATAGTTGGTCTTATCGATAGTGGGGTGTGGCCAGA 407
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 450 GAATGCAAAACACGGCGATGGGGTCATAGTTGGTGTTATCGATAGTGGGGTGTGGCCAGA 509
Query 408 ATCAAGGAGTTTCGATGACAAAGGAATGGGACCAATTCCAGAATCTTGGAAAGGAATCTG 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 510 ATCAAGGAGTTTCGATGACAAAGGAATGGGACCAATTCCAGAATCTTGGAAAGGAATCTG 569
Query 468 CCAAACCGGTGTTGCCTTCAACTCTTCCCATTGTAATCGGTACTATGCAAGAGGGTACGA 527
||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 570 CCAAACCGGTGTTTCCTTCAACTCTTCCCACTGTAATCGGTACTACGCAAGAGGGTACGA 629
Query 528 GAGATATTACGGACCGTTCAATGCCGAAGCTAACAAAGACTTCTTGTCTCCACGAGACGC 587
||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 630 GAGATATTACGGAGCGTTCAATGCCGAAGCAAACAAAGACTTCTTGTCTCCACGAGACGC 689
Query 588 TGATGGACATGGTTCCCACACAGCTTCAACCGCCGTTGGTCGCCGAGTAGACGGTGTTTC 647
|||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 690 TGATGGACATGGTTCCCACACAGCTTCAACCGGCGTTGGTCGCCGAGTAAACGGTGTTTC 749
Query 648 TGCACTAGGCGGTATTGCTATGGGTACGGCTTCAGGCGGCGCTTCACTAGCTCGTCTCGC 707
||| || ||||||||||||||||| ||||||||||||||||| ||| | |||||||| ||
Sbjct 750 TGCTCTCGGCGGTATTGCTATGGGCACGGCTTCAGGCGGCGCCTCATTGGCTCGTCTTGC 809
Query 708 CGTTTACAAAGCTTGTTGGGCGGTTCCAAACAAGGAAAAATACGCCACAAACACTTGTTT 767
||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 810 TGTTTACAAAGCTTGTTGGGCGATTCCAAACACGGAAAAATACGCCACAAACACTTGTTT 869
Query 768 TGATGAAGATATGTTGGCTGCGTTTGACGATGCCATTGCTGATGGTGTCAATGTTATCAG 827
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 870 TGATGAAGATATGTTGGCTGCGTTTGACGATGCGATTGCTGATGGTGTCAATGTTATCAG 929
Query 828 TATTTCTATTGGAACTGTTGAACCTCACACGTATTTGGAGGATGGAATCGCGATCGGAGC 887
||||||||||||| | ||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 930 TATTTCTATTGGAGCGGTTGAACCTCATACGTATTTGGAGGATGGAATAGCGATCGGAGC 989
Query 888 GTTGCATGCAGTTAAAAGAGATATTGTGGTTGCGGCTAGCGCTGGAAATGATGGACCTGC 947
||| || || ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 990 GTTACACGCGGTTAAAAGAGATATTGTGGTTGCGGCTAGCGCTGGAAATGATGGACCGGC 1049
Query 948 GCGGG-AAACTCTGTCGAATCCAGCTCCGTGGATTATTACCGTCGGAGCTAGTAGTCTTG 1006
| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1050 G-GGGCAAACTCTGTCGAATCCAGCTCCGTGGATTATTACCGTGGGAGCTAGTAGTCTTG 1108
Query 1007 ATCGGTTTTTCGTCGGCCGTCTTGAACTTGGTGATGGCTATGTATTCGAGTCGGACTCAT 1066
|||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1109 ATCGATTTTTCGTAGGCCGTCTTGAACTTGGTGATGGCTATATATTCGAGTCGGACTCAT 1168
Query 1067 TAACAACATTAAAGATGGACAATTATGCTCCTCTAGTCTACGCTCCTGACGTGGTTGTTC 1126
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1169 TAACAACATTAAAGATGGACAATTTTGCTCCTCTAGTCTACGCTCCTGACGTGGTTGTTC 1228
Query 1127 CAGGCGTTTCAAGGAACGACGCAATGCTATGTTTACCGAATGCACTTTCACCTGATCATG 1186
| ||||||||||||||||||||| ||||||||||||||||| |||||||||| |||| ||
Sbjct 1229 CCGGCGTTTCAAGGAACGACGCATTGCTATGTTTACCGAATTCACTTTCACCGGATCTTG 1288
Query 1187 TGAGAGGTAAAGTGGTATTATGTTTAAGAGGTTACGGTTCAGGTTCAACAATTGGTAAAG 1246
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1289 TGAGAGGTAAAGTGGTACTATGTTTGAGAGGTTACGGTTCAGGTTCAACAATTGGTAAAG 1348
Query 1247 GTCTTGAGGTAAAGCGAGCCGGAGGAGTTGGTATGATATTAGCAAATTCTCGGGATAACG 1306
|| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1349 GTATTGAGGTAAAGCGAGCCGGAGGAGTTGGTATGATTTTAGCAAATTCTCGGGATAACG 1408
Query 1307 ATGCATTCGACGTTGAGTCTCATTTCGTACCAACTGCTTTGGTTTTCTCATCAACGGTCG 1366
|||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 1409 ATGCATTCGACGTTGAGTCTCATTTCGTACCAACTGTTTTGGTTTTCTCATCCACGGTCG 1468
Query 1367 ATAGAATTCTCGATTACATCTACAATACTTATGAACCGGTTGCTTTCATCAAACCGGCAG 1426
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1469 ATAGGATTCTCGATTACATCTACAATACTTATGAACCGGTTGCTTTCATTAAACCAGCAG 1528
Query 1427 AAACAGTACTTTACCGAAACCAACCGGAAGATTCGGTTTACCCATACAAACCGGCTCCAT 1486
|||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |
Sbjct 1529 AAACAGTACTTTACCGAAACCAACCGGAAGATTCAGTTTACCTATACAAACCGGCTCCTT 1588
Query 1487 TTATGACTA 1495
|||||||||
Sbjct 1589 TTATGACTA 1597
Score = 1168 bits (632), Expect = 0.0
Identities = 724/769 (94%), Gaps = 4/769 (1%)
Strand=Plus/Plus
Query 1499 TTCTACCGGATATTATCGCGCCAGGACTGAATATATTAGCCGCATGGAGCGGGGCGGATT 1558
|||| ||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 1628 TTCTTCCGGATATTATTGCGCCAGGACTTAATATATTAGCCGCATGGAGTGGGGCGGATT 1687
Query 1559 CGGCAAGCAAAGATTCGATAGACCGACGAGTTTTAGATTATAATCTCGACTCAGGAACTT 1618
| || ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1688 CAGCGAGCAAAGATTCAATAGACCGACGAGTTTTAGGTTATAATCTCGACTCAGGAACTT 1747
Query 1619 CTATGTCTTGCCCTCATGTTGCTGGTGCAATTGCCCTTCTCAAAAGCATGCATCCC-ACA 1677
|||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 1748 CTATGTCTTGTCCTCATGTTGCTGGTGCAATTGCCCTTCTCAAAAGCATGCA-CCCTTCA 1806
Query 1678 TGGAGTAGTGCTGCTATAAGATCTGCCCTCATGACCACTGCTTCGATGACCAACGAGGAC 1737
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1807 TGGAGTAGTGCTGCTATAAGATCTGCCCTCATGACCACTGCTTCGATGACCAACGAGGAC 1866
Query 1738 AATGAACCAATCCAAGACTATGATGGTTCACCCGCAAACCCATTTGCACTTGGGTCAAGA 1797
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 1867 AATGAACCAATCCAAGACTATGATGGTTCACCCGCAAACCCATTTGCGCTTGGGTCAGGA 1926
Query 1798 CATTTTAGACCAACGAAAGCTGCATCTCCCGGTTTAGTCTACGATGCATCATACCAATCT 1857
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1927 CATTTTAGACCAACAAAAGCTGCATCTCCCGGTTTAGTCTACGATGCATCATACCAATCT 1986
Query 1858 TACCTTCTCTACTGTTGTTCAGTTGGTTTAACCAATCTTGACCCGACATTCAAATGTCCA 1917
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1987 TACCTTCTATACTGTTGTTCGGTTGGTTTAACCAATCTTGACCCGACATTCAAATGTCCA 2046
Query 1918 AGTAGAATCCCTCCCGGTTATAACCTAAATTACCCGTCAATCTCAATTCCATATCTCAGT 1977
|||||||| |||| ||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 2047 AGTAGAATTCCTCTCGGTTATAACCTAAATTACCCGTCAATCTCAATACCATATCTCACT 2106
Query 1978 GGGACAGTGACCGTTACAAGGACGGTTACATGTGTTGGACGAACGGGTAATTCAACAAGC 2037
|| |||||| ||||||| |||||||| ||||||||||||||| |||||||||||||||||
Sbjct 2107 GGAACAGTGGCCGTTACGAGGACGGTCACATGTGTTGGACGACCGGGTAATTCAACAAGC 2166
Query 2038 GTATATGTCTTTAATGCTCAACCGCCAAACGGTGTC-TTGGTTAAGGCTGAACCAAATGT 2096
||||||||||| || ||||||||||| | |||||| ||| |||| ||||||||||||||
Sbjct 2167 GTATATGTCTTCAACGCTCAACCGCCGTATGGTGTCATTG-TTAAAGCTGAACCAAATGT 2225
Query 2097 TTTGGTCTTTGATAAGATTGGTCAGAAGAAGCGGTTTAACATCATTTTTACTACACAGAG 2156
||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 2226 TTTGGTCTTTGATCGGATTGGTCAGAAGAAGCGGTTTAACATCATTTTTACGACACAGGG 2285
Query 2157 ATATGAGTTTACAGGTGAGGCTCGGAGGGATCGATATCGGTTTGGATGGTTTAGCTGGAC 2216
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2286 ATACGAGTTTACAGGTGAGGCTCGGAGGGATCGATATCGGTTTGGATGGTTTAGTTGGAC 2345
Query 2217 CGATGGACATCATGTTGTGAGGAGTTCAATTGCTGTTTCTTTAGTATGA 2265
|||||||| |||||||||||||||| ||||| ||||||| ||||| |||
Sbjct 2346 CGATGGACTTCATGTTGTGAGGAGTCCAATTTCTGTTTCCTTAGTTTGA 2394
Score = 86.1 bits (46), Expect = 1e-15
Identities = 57/62 (92%), Gaps = 1/62 (2%)
Strand=Plus/Plus
Query 27 TTTC-CTTTCCCTTCTCCTCTTTCTCGTTCCTCTCTTAGCTTCATGCACTAAAGAGAAGC 85
|||| || |||||||| ||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 11 TTTCTCTATCCCTTCTTCTCTTTCTCCTTCCTCTCTTAGCTTCATGCACTAAAGAGAAAC 70
Query 86 AG 87
||
Sbjct 71 AG 72
> Ahg494419 jgi|Araly1|494419|fgenesh2_kg.8__235__AT5G45650.1
Length=2541
Score = 514 bits (278), Expect = 1e-144
Identities = 619/778 (80%), Gaps = 45/778 (6%)
Strand=Plus/Plus
Query 1504 CCGGATATTATCGCGCCAGGACTGAATATATTAGCCGCATGGAGCGGGGCGGATTCGGCA 1563
||||| |||| ||| || |||||||| ||| | || ||||||||||| || ||||| |
Sbjct 1696 CCGGACATTACCGCACCCGGACTGAACATACTGGCTGCATGGAGCGGCGCAGATTCACCG 1755
Query 1564 AGCAAAGAT-TCGA-TAGACCGACGAGTTTTAGATTATAATC-TCGACTCAGGAACTTCT 1620
|||||| || || | |||| | | ||||| ||||||||| | || |||||||||||||
Sbjct 1756 AGCAAA-ATGTC-AGTAGATCAAAGAGTTGCAGATTATAA-CATCTACTCAGGAACTTCA 1812
Query 1621 ATGTCTTGCCCTCATGTTGCTGGTGCAATTGCCCTTCTCAAAAG-CATGCATCCCACATG 1679
|||||||| |||||||| || ||||||||||| |||||| |||| ||| ||||||| |||
Sbjct 1813 ATGTCTTGTCCTCATGTCGCCGGTGCAATTGCTCTTCTC-AAAGCCATTCATCCCAAATG 1871
Query 1680 GAGTAGTGCTGCTATAAGATCTGCCCTCATGACCACTGCTTCGATGACCAACGAGGACAA 1739
|||||||||||||||||||||||| || |||||| |||||| |||||||||||| | ||
Sbjct 1872 GAGTAGTGCTGCTATAAGATCTGCTCTTATGACCTCTGCTTGGATGACCAACGACAAGAA 1931
Query 1740 TG-AACCAATCCAAGACTA-TGA-TGGTTCACCCGCAAACCCATTTGCACTTGGGTCAAG 1796
| |||| ||||||||| | | | ||||| |||||||||||||||||||||||||||| |
Sbjct 1932 -GAAACCGATCCAAGAC-ACT-ACTGGTTTACCCGCAAACCCATTTGCACTTGGGTCAGG 1988
Query 1797 ACATTTTAGACCAACGAAAGCTGCATCTCCCGGTTTAGTCTACGATGCATCATACCAATC 1856
|||||| |||||||| ||||||||| ||||||||||||||||||||||||||||| | |
Sbjct 1989 ACATTTCAGACCAACTAAAGCTGCAGATCCCGGTTTAGTCTACGATGCATCATACCGAGC 2048
Query 1857 TTACCTTCTCTACTGT-TGTTCAGTTGGT-TTAACCAATCTTGACCCGACATTCAAATGT 1914
|||||||||||| || || || ||| | ||| | ||| ||||||| ||||||||||||
Sbjct 2049 TTACCTTCTCTA-TGGCTGCTCGGTTAATATTA-CAAATATTGACCCCACATTCAAATGT 2106
Query 1915 CCAAGTAGAATCCCTCCCGGTTATAACCTA-AATTACCCGTCAATCTCAATTCC-ATATC 1972
|| |||| |||||||||||||||||| | | || |||||||||||| || | || | |||
Sbjct 2107 CCTAGTAAAATCCCTCCCGGTTATAATC-ACAACTACCCGTCAATCGCAGTCCCGA-ATC 2164
Query 1973 TCAGTGGGACAGTGACCGTTACAAGGACGGTTACATGTGTTGGACGAACGGGTAATTCAA 2032
||| ||| ||| |||||| ||| ||||||||| ||||||| || || ||| ||||
Sbjct 2165 TCAACAAGACGGTGGCCGTTAAAAGAACGGTTACAAATGTTGGA--AATGG-TAACTCAA 2221
Query 2033 CAAGCGTATA-TGTCTTTAATGCTCAACCGCCAAACGG-TGTCTT-GGTTAAGGCTGA-A 2088
|||| ||| | | || | ||| |||||||| ||| ||| || |||||||||| | |
Sbjct 2222 CAAGTACATACT-TATTCAGCGCTAAACCGCCAT-CGGGTGT-TTCGGTTAAGGCT-ATA 2277
Query 2089 CCAAATGTTTTGGTCTTTGATAAGATTGGTCAGAAGAAGCGGTTTAACATCATTTTTACT 2148
|| ||||||||| ||||| | ||||||||| ||| |||||||||| ||| | |||
Sbjct 2278 CCGAATGTTTTGTTCTTTAACCGGATTGGTCAAAAGCAGCGGTTTAAGATCGTGATTAA- 2336
Query 2149 ACA-C-AGAGATATGAGTTTAC-AGGTGAGGCTCGGA--GGGATCGATATCGGTTTGGAT 2203
|| | | ||| | || | | | || | || | | ||| || ||| | |||||||
Sbjct 2337 ACCGCTAAAGA-ACCAGGTGATGAA-TGCGACT-GAAAAGGG-TCAATACCAATTTGGAT 2392
Query 2204 GGTTTAGCTGGACCGATGGACATC-ATGTTGTGAGGAGTTCAATTGCTGTTTCTTTAG 2260
||||||| ||||| ||| | || |||||||||||||| | ||||||||||| ||||
Sbjct 2393 GGTTTAGTTGGACAGATAAAG-TCCATGTTGTGAGGAGTCCTATTGCTGTTTCCTTAG 2449
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85284058555
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5