BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G45660.1
Length=994
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494418 jgi|Araly1|494418|fgenesh2_kg.8__234__AT5G45660.1 1487 0.0
> Ahg494418 jgi|Araly1|494418|fgenesh2_kg.8__234__AT5G45660.1
Length=972
Score = 1487 bits (805), Expect = 0.0
Identities = 919/974 (94%), Gaps = 7/974 (1%)
Strand=Plus/Plus
Query 23 ACCGGAATCAATGGCCGGGATTAAAACTTCTCCGGCGACGATTAAGCTCTTCACCGTTCT 82
||||||| |||||||||| || |||||||| |||||||||||||| |||||| |||||||
Sbjct 1 ACCGGAACCAATGGCCGGAATAAAAACTTCACCGGCGACGATTAAACTCTTCTCCGTTCT 60
Query 83 ATTCCTCATTCTCACAATCTCATCTCCATCACCCAAATTCGTAAACGCCTTCACTTTCCC 142
||| ||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 61 ATTTCTCATCCTCACAATCACATCTCCATCACCCAAATTCGTAAATGCCTTCACTTTCCC 120
Query 143 ATTTTCCTTCACACAATACAAAACCCTAATCTCAATCTCACGATCACTCCTCCTCCGCGT 202
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 121 ATTCTCCTTCACACAATACAAAACCCTAATCTCAATCTCACGATCTCTCCTCCTCCGCGT 180
Query 203 CGCAAACCTACGCGCTTCACGTGGAGACGCATTGGGTTCGTCTCGTGTACGAGCAATGGC 262
||| ||||||||||||||||||||||||||| |||||||||| ||||||| ||| |||||
Sbjct 181 CGCTAACCTACGCGCTTCACGTGGAGACGCACTGGGTTCGTCACGTGTACAAGCCATGGC 240
Query 263 TGATGAAATCGATCGTGGATTAGGGTTAGGGTTTATAAGCAGAGCTTGGTCTGTTGGTTG 322
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 241 TGATGAAATCGATCGTGGGTTAGGGTTAGGGTTTATAAGCAGAGCTTGGTCTGTTGGATG 300
Query 323 GGATTATATGTGGAATTACGCTTGGAGAAAGGGAGGGATTGACTACGGTGAGATGTATGG 382
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 301 GGATTATATGTGGAATTACGCTTGGAGAAAGGGAGGGATTGACTACGGTGAGGTGTATGG 360
Query 383 TGCGATTGGTGATCTCAATGAGCTTATGGGTTTAGTGACTGAGTTTAATAGAGCTGAATC 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TGCGATTGGTGATCTCAATGAGCTTATGGGTTTAGTGACTGAGTTTAATAGAGCTGAATC 420
Query 443 TAATGCTGATAAAGCTAGCTCTGTTGCTCGGAGTTATGGCAAAGCTCTTCGTGTTTCG-A 501
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 421 TAATGCTGATAAAGCTAGTTCTGTTGCTCGGAGTTATGGCAAAGCTCTTCGTGTTTCGAA 480
Query 502 ACAAATTGCTTCGTCGTCTTCTTAGAATCTTTGCTAAATCGGGTGCATTGAGGGAGTTTT 561
|| | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 481 AC-AGTTGCTTCGTCGTCTTCTTAGAATCTTTGGTAAATCGGGTGCATTGAGGGAGTTTT 539
Query 562 GGGAGATGGTGCAAGCTGAAGTAGTCGATGGAGAGTTACTACAAGACTGTCTCGAAGTAG 621
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 540 GGGAGATGGTGCAAGCTGAAGTAGTCGATGGAGAGTTATTACAAGACTGTCTCGAAGTAG 599
Query 622 GCGGAAACGACGTTAAGAGTTTGCTTCAAATAGCAAAGGACATGGCTGTACAGttttttt 681
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 600 GCGGAAACGACGTTAAGAGTTTGCTTCAAATAGCAAAGGACATGGCTCTACAGTTTTTTT 659
Query 682 CTTCTCAAAGCCGTTCCTCTGATGAACTTTAGCTACAAAGCAGAGCGCTTTCACCTACGT 741
||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 660 CTTCTCAAAGCCGTTCCTCCGATGAACTTTAGCTACAAAGCAGAGCGCTTTCATGTACGT 719
Query 742 TCCTTCTTTCCGTTTTGTTCCACATCGGATGTGACCCTTTTGGCACGTTGTACTAT-TGT 800
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 720 TCCTTCTTTCCGTTTTGTTCCACATCGGATGTGACCCTTTTGGCACGTTGTACTATCT-T 778
Query 801 ATGCATTAGCCAACTCCTCTAGGAAA-TCCTCCATAACCATTTTGTTCATTACAACTTTC 859
||||||||| ||| |||||||||||| ||| ||| |||||||||| || ||||| ||||
Sbjct 779 ATGCATTAGTCAAATCCTCTAGGAAAATCCGCCAGAACCATTTTGCTCGTTACATCTTTT 838
Query 860 GCTAGATAAGTTC-AAGGGATGTATAGACTAGAAAACGATTTGTTTGTTCGTTT-ATAAG 917
|||||||||||| ||||||| | ||||||||||||| |||||||||||||||| |||||
Sbjct 839 GCTAGATAAGTTTTAAGGGATATGTAGACTAGAAAACAATTTGTTTGTTCGTTTTATAAG 898
Query 918 TCTAAGACATTCGTAGACTAGAAACTCGAGGTTCTTTTGTAATTTCATCAATCTAAGCAC 977
| ||||| |||| ||||||||||||||||||||||||||||||||||| || |||||| |
Sbjct 899 TTTAAGAGATTCATAGACTAGAAACTCGAGGTTCTTTTGTAATTTCATTAACCTAAGCCC 958
Query 978 ACATTTTGTAATCG 991
| |||||||||||
Sbjct 959 GCTTTTTGTAATCG 972
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36941106573
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5