BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G45660.1 Length=994 Score E Sequences producing significant alignments: (Bits) Value Ahg494418 jgi|Araly1|494418|fgenesh2_kg.8__234__AT5G45660.1 1487 0.0 > Ahg494418 jgi|Araly1|494418|fgenesh2_kg.8__234__AT5G45660.1 Length=972 Score = 1487 bits (805), Expect = 0.0 Identities = 919/974 (94%), Gaps = 7/974 (1%) Strand=Plus/Plus Query 23 ACCGGAATCAATGGCCGGGATTAAAACTTCTCCGGCGACGATTAAGCTCTTCACCGTTCT 82 ||||||| |||||||||| || |||||||| |||||||||||||| |||||| ||||||| Sbjct 1 ACCGGAACCAATGGCCGGAATAAAAACTTCACCGGCGACGATTAAACTCTTCTCCGTTCT 60 Query 83 ATTCCTCATTCTCACAATCTCATCTCCATCACCCAAATTCGTAAACGCCTTCACTTTCCC 142 ||| ||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||| Sbjct 61 ATTTCTCATCCTCACAATCACATCTCCATCACCCAAATTCGTAAATGCCTTCACTTTCCC 120 Query 143 ATTTTCCTTCACACAATACAAAACCCTAATCTCAATCTCACGATCACTCCTCCTCCGCGT 202 ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 121 ATTCTCCTTCACACAATACAAAACCCTAATCTCAATCTCACGATCTCTCCTCCTCCGCGT 180 Query 203 CGCAAACCTACGCGCTTCACGTGGAGACGCATTGGGTTCGTCTCGTGTACGAGCAATGGC 262 ||| ||||||||||||||||||||||||||| |||||||||| ||||||| ||| ||||| Sbjct 181 CGCTAACCTACGCGCTTCACGTGGAGACGCACTGGGTTCGTCACGTGTACAAGCCATGGC 240 Query 263 TGATGAAATCGATCGTGGATTAGGGTTAGGGTTTATAAGCAGAGCTTGGTCTGTTGGTTG 322 |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || Sbjct 241 TGATGAAATCGATCGTGGGTTAGGGTTAGGGTTTATAAGCAGAGCTTGGTCTGTTGGATG 300 Query 323 GGATTATATGTGGAATTACGCTTGGAGAAAGGGAGGGATTGACTACGGTGAGATGTATGG 382 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 301 GGATTATATGTGGAATTACGCTTGGAGAAAGGGAGGGATTGACTACGGTGAGGTGTATGG 360 Query 383 TGCGATTGGTGATCTCAATGAGCTTATGGGTTTAGTGACTGAGTTTAATAGAGCTGAATC 442 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 TGCGATTGGTGATCTCAATGAGCTTATGGGTTTAGTGACTGAGTTTAATAGAGCTGAATC 420 Query 443 TAATGCTGATAAAGCTAGCTCTGTTGCTCGGAGTTATGGCAAAGCTCTTCGTGTTTCG-A 501 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | Sbjct 421 TAATGCTGATAAAGCTAGTTCTGTTGCTCGGAGTTATGGCAAAGCTCTTCGTGTTTCGAA 480 Query 502 ACAAATTGCTTCGTCGTCTTCTTAGAATCTTTGCTAAATCGGGTGCATTGAGGGAGTTTT 561 || | |||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 481 AC-AGTTGCTTCGTCGTCTTCTTAGAATCTTTGGTAAATCGGGTGCATTGAGGGAGTTTT 539 Query 562 GGGAGATGGTGCAAGCTGAAGTAGTCGATGGAGAGTTACTACAAGACTGTCTCGAAGTAG 621 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 540 GGGAGATGGTGCAAGCTGAAGTAGTCGATGGAGAGTTATTACAAGACTGTCTCGAAGTAG 599 Query 622 GCGGAAACGACGTTAAGAGTTTGCTTCAAATAGCAAAGGACATGGCTGTACAGttttttt 681 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 600 GCGGAAACGACGTTAAGAGTTTGCTTCAAATAGCAAAGGACATGGCTCTACAGTTTTTTT 659 Query 682 CTTCTCAAAGCCGTTCCTCTGATGAACTTTAGCTACAAAGCAGAGCGCTTTCACCTACGT 741 ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| Sbjct 660 CTTCTCAAAGCCGTTCCTCCGATGAACTTTAGCTACAAAGCAGAGCGCTTTCATGTACGT 719 Query 742 TCCTTCTTTCCGTTTTGTTCCACATCGGATGTGACCCTTTTGGCACGTTGTACTAT-TGT 800 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | Sbjct 720 TCCTTCTTTCCGTTTTGTTCCACATCGGATGTGACCCTTTTGGCACGTTGTACTATCT-T 778 Query 801 ATGCATTAGCCAACTCCTCTAGGAAA-TCCTCCATAACCATTTTGTTCATTACAACTTTC 859 ||||||||| ||| |||||||||||| ||| ||| |||||||||| || ||||| |||| Sbjct 779 ATGCATTAGTCAAATCCTCTAGGAAAATCCGCCAGAACCATTTTGCTCGTTACATCTTTT 838 Query 860 GCTAGATAAGTTC-AAGGGATGTATAGACTAGAAAACGATTTGTTTGTTCGTTT-ATAAG 917 |||||||||||| ||||||| | ||||||||||||| |||||||||||||||| ||||| Sbjct 839 GCTAGATAAGTTTTAAGGGATATGTAGACTAGAAAACAATTTGTTTGTTCGTTTTATAAG 898 Query 918 TCTAAGACATTCGTAGACTAGAAACTCGAGGTTCTTTTGTAATTTCATCAATCTAAGCAC 977 | ||||| |||| ||||||||||||||||||||||||||||||||||| || |||||| | Sbjct 899 TTTAAGAGATTCATAGACTAGAAACTCGAGGTTCTTTTGTAATTTCATTAACCTAAGCCC 958 Query 978 ACATTTTGTAATCG 991 | ||||||||||| Sbjct 959 GCTTTTTGTAATCG 972 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36941106573 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5