BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G45670.1
Length=1481
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494417 jgi|Araly1|494417|fgenesh2_kg.8__233__AT5G45670.1 2093 0.0
Ahg492964 jgi|Araly1|492964|fgenesh2_kg.7__2397__AT4G18970.1 874 0.0
> Ahg494417 jgi|Araly1|494417|fgenesh2_kg.8__233__AT5G45670.1
Length=1343
Score = 2093 bits (1133), Expect = 0.0
Identities = 1279/1349 (95%), Gaps = 12/1349 (1%)
Strand=Plus/Plus
Query 1 ATTCTTCAAAACTATATTATATAAACACATTTTTCGTTTCTTCAC-ATTCACAAAACATC 59
|||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 1 ATTCTTCAAAACTATATTATATAAACACATTTTTAGTTTCTTCACAATTCACAAAACATC 60
Query 60 TCTCTCTTTCTTCTCCCATTCACTCACTATCTTGCTCCTAGAAAAAGATGGCGAGAATGA 119
|||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 61 TCTCTCCTTCTTCTCCCTTTCACTCACTATCTTGCTCTTAGAAAAAGATGGCGAGAATGT 120
Query 120 GTTTGATGATCATGATGATTATGGTTGCTGTGACCATGATTAACATTGCTAAGAGTGATC 179
|||| ||||| | ||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 121 GTTTAATGAT-A--ATGATTATGGTTGCTATGACCATG---AACATTGCTAAGAGTGATC 174
Query 180 CCATTGCACCATGTTACTTCATATTTGGTGACTCTTTGGTTGATAATGGCAACAATAATC 239
|||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 175 CCATTGCACCCTGTTACTTCATATTTGGTGACTCTTTGGTTGATAATGGCAATAACAATC 234
Query 240 AGCTTCAGTCATTAGCTAGAGCTAATTACTTTCCTTACGGTATTGACTTTGCTGCCGGTC 299
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 235 AGCTTCAGTCATTAGCTAGAGCTAATTACTTTCCTTATGGTATTGATTTTGCTGCCGGTC 294
Query 300 CAACCGGTCGGTTTAGCAACGGCTTAACCACTGTCGATGTTATCGCTCAGCTTTTGGGTT 359
||||||||||||||||||||||| |||||| || |||||||||||| |||||||||| |
Sbjct 295 CAACCGGTCGGTTTAGCAACGGCAGAACCACCGTTGATGTTATCGCTGAGCTTTTGGGGT 354
Query 360 TCGAGGACTACATTACACCTTACGCTTCTGCAAGAGGACAAGACATTCTCCGAGGAGTTA 419
|||| |||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||
Sbjct 355 TCGACGACTACATTACACCGTACGCCTCTGCTAGAGGACAAGACATTCTCCGAGGAGTTA 414
Query 420 ACTATGCTTCCGCTGCTGCCGGAATCCGAGACGAAACCGGCAGACAATTGGGAGGTCGAA 479
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 415 ACTATGCTTCCGCTGCTGCCGGAATCCGAGATGAAACCGGCAGACAATTGGGAGGTAGAA 474
Query 480 TAGCATTTGCAGGGCAAGTAGCAAATCACGTGAACACTGTGTCACAAGTAGTGAACATAC 539
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 475 TAGCATTTGCAGGACAAGTAGCTAATCACGTGAACACTGTGTCACAAGTAGTGAACATAC 534
Query 540 TTGGTGATCAAAACGAAGCCTCGAATTACCTCAGCAAATGCATTTACTCTATCGGATTAG 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 TTGGTGATCAAAACGAAGCCTCGAATTACCTCAGCAAATGCATTTACTCTATCGGATTAG 594
Query 600 GCAGTAACGATTATCTTAACAACTACTTCATGCCTACTTTTTACTCTACCGGTAACCAGT 659
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 595 GCAGTAACGATTATCTCAACAACTACTTCATGCCCACTTTTTACTCTACCGGTAACCAGT 654
Query 660 TCTCCCCCGAATCCTATGCCGACGATCTCGTTGCCCGTTACACCGAACAACTCAGGGTAC 719
|||||||||||||||||||||||||||||||| | ||||||||||| ||||||||| ||
Sbjct 655 TCTCCCCCGAATCCTATGCCGACGATCTCGTTACTCGTTACACCGAGCAACTCAGGATAT 714
Query 720 TGTATACCAATGGAGCGAGGAAGTTTGCGTTGATAGGAGTCGGGGCAATCGGTTGCAGCC 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 TGTATACCAATGGAGCGAGGAAGTTTGCGTTGATAGGAGTCGGGGCAATCGGTTGCAGCC 774
Query 780 CGAACGAGCTAGCTCAAAACAGCAGAGACGGAAGAACGTGTGACGAAAGAATCAACTCAG 839
|||| |||||||| || ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 775 CGAATGAGCTAGCACAGAACAGCAGAGATGGAAGAACGTGTGACGAAAGAATCAACTCAG 834
Query 840 CGAACAGAATCTTTAACAGCAAACTCATATCTATAGTCGACGCTTTTAACCAGAACACAC 899
| ||||||||||| ||||||||||| |||||||| || ||||||||||||||||||||||
Sbjct 835 CAAACAGAATCTTCAACAGCAAACTTATATCTATGGTTGACGCTTTTAACCAGAACACAC 894
Query 900 CAGATGCAAAATTCACTTACATCAACGCTTATGGCATCTTCCAAGACATTATTACAAACC 959
|||| ||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||
Sbjct 895 CAGACGCAAAATTCACTTACATCAACGCCTATGGGATCTTCCAAGACATTGTTACAAACC 954
Query 960 CTGCTCGCTACGGGTTTAGAGTGACAAATGCAGGATGTTGTGGAGTTGGGAGGAACAATG 1019
|||| || ||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 955 CTGCGCGATACGGGTTTAGTGTGACAAATGCAGGATGTTGTGGAGTTGGGAGGAATAATG 1014
Query 1020 GACAGATAACTTGTCTTCCAGGTCAAGCACCATGTCTAAATAGGAATGAGTATGTGTTTT 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1015 GACAGATAACTTGTCTTCCAGGTCAAGCACCATGTCTAAATAGGAATGAGTATGTGTTTT 1074
Query 1080 GGGATGCGTTTCATCCCGGTGAAGCTGCGAATATTGTTATTGGAAGACGATCTTTTAAGC 1139
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1075 GGGATGCGTTTCATCCCGGTGAAGCTGCGAATATTGTTATCGGAAGACGATCTTTTAAGC 1134
Query 1140 GAGAAGCTGCTTCTGATGCTCATCCTTATGATATTCAGCAGCTAGCATCTCTCTAAAGAG 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1135 GAGAAGCTGCTTCTGATGCTCATCCTTATGATATTCAGCAGCTAGCATCTCTCTAAAGAG 1194
Query 1200 AGAAAGATCTTTTGGTTGTCTAAGTATTTTGATAGTTC-TTCAATGGCAGCTGAGTTTTG 1258
|||||||||||||| |||| ||||| |||||||||||| |||||||||||||||||||||
Sbjct 1195 AGAAAGATCTTTTGCTTGTGTAAGTGTTTTGATAGTTCCTTCAATGGCAGCTGAGTTTTG 1254
Query 1259 GACTCAAGAAGAA----GTGATTTGGTTTGTGTTGTGTGATGTCATAACTGTTTATGTAA 1314
|||||||||| || ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1255 GACTCAAGAAAAAAAAAGTGATTTGGTTTGTGTTATGTGATGTCATAACTGTTTATGTAA 1314
Query 1315 TGATTTGGAGTTACTGTTTATCTCTTTTT 1343
||||||||||||||||||| ||||| |||
Sbjct 1315 TGATTTGGAGTTACTGTTTCTCTCTATTT 1343
> Ahg492964 jgi|Araly1|492964|fgenesh2_kg.7__2397__AT4G18970.1
Length=1397
Score = 874 bits (473), Expect = 0.0
Identities = 862/1049 (82%), Gaps = 30/1049 (3%)
Strand=Plus/Plus
Query 161 AACATTGCTAAGAGTGATCCC-ATTGCACCATGTTACTTCATATTTGGTGACTCTTTGGT 219
|||||||||| | |||| ||| || |||||||||||||||||||| ||||||||||||||
Sbjct 161 AACATTGCTATGGGTGA-CCCAATAGCACCATGTTACTTCATATTCGGTGACTCTTTGGT 219
Query 220 TGATAATGGCAACAATAATCAGCTTCA-GTCATTAGCTAGAGCTAATTACTTTCCTTACG 278
||||| ||| ||||| |||| |||| | || ||||| |||||||||||||| |||||||
Sbjct 220 TGATAGTGGAAACAACAATCGGCTT-ACCTCTTTAGCAAGAGCTAATTACTTCCCTTACG 278
Query 279 GTATTGACTTTGCTG-CCGGTCCAACCGGTCGGTT-TAGCAACGGCTTAACCACTGTCGA 336
|||| ||| || | | |||||||||||| ||||| | |||||| |||||| |||||
Sbjct 279 GTATCGAC-TTCCAGTTCGGTCCAACCGGCCGGTTCT-CCAACGGAAAAACCACCGTCGA 336
Query 337 TGTTATCGCTC-AGCTT-TTGGGTTTCGAGGACTACATTACACCTTACGCTTCTGCAAGA 394
||| ||| | | ||||| || |||||||| |||||||||||||| || | |||||
Sbjct 337 TGTCATCAC-CGAGCTTCTT-GGTTTCGATGACTACATTACACCGTATTCCGAAGCAAGG 394
Query 395 GGACAAGACATTCTCCGAGGAGTTAACTATGCTTCCGCTGCTGCCGGAATCCGAGACGAA 454
||| |||| || || ||||||| ||||| ||||| || ||||||||||| ||||| |||
Sbjct 395 GGAGAAGATATCCTGAGAGGAGTAAACTACGCTTCTGCAGCTGCCGGAATACGAGAAGAA 454
Query 455 ACCGGCAGACAATTGGGAGGTCGAATAGCATTTGCAGGGCAAGTAGCAAATCACGTGAAC 514
|| ||| | |||||||||| | ||||| ||||||||||||||||||| ||||| || |||
Sbjct 455 ACTGGCCGTCAATTGGGAGCTAGAATAACATTTGCAGGGCAAGTAGCTAATCATGTAAAC 514
Query 515 ACTGTGTCACAAGTAGTGAACATACTTGGTGATC-AAAACGAAGCCT-CGAATTACCTCA 572
|||||||||||||| |||||||||||||| || | | || |||| || | |||||||| |
Sbjct 515 ACTGTGTCACAAGTTGTGAACATACTTGGAGA-CGAGAATGAAG-CTGCTAATTACCTAA 572
Query 573 GCAAATGCATTTACTCTATCGGATTAGGCAGTAACGATTATCTTAACAACTACTTCATGC 632
|||||||||| ||||| ||||| |||||||||||||| ||||| || ||||| || ||||
Sbjct 573 GCAAATGCATCTACTCAATCGGGTTAGGCAGTAACGACTATCTCAATAACTATTTTATGC 632
Query 633 CTACTTT-TTACTCTACCGGTAACCAGTTCTCCCCCGAATCCTATGCCGACGATCTCGTT 691
|| ||| |||||| || || | ||||| |||||| || ||||||||| |||| ||| |
Sbjct 633 CT-GTTTATTACTCCACTGGGAGCCAGTACTCCCCGGATTCCTATGCCAACGACCTCATA 691
Query 692 GCCCGTTACACCGAACAACTCAGGGTACTGTATACCAATGGAGCGAGGAAGTTTGCGTTG 751
||| |||||||| |||||| || || |||||| ||| ||||||||||||||||||||
Sbjct 692 AACCGCTACACCGAGCAACTCCGGATAATGTATAACAACGGAGCGAGGAAGTTTGCGTT- 750
Query 752 A-TAGG-AGTCGGGGCAATCGGTTGCAGCCCGAACGAGCTAGCTCAAAACAGCAGAGACG 809
| | || | | || ||||| || ||||| || || ||||| ||||||||||| |||||||
Sbjct 751 AGTTGGTA-TTGGCGCAATTGGATGCAGTCCAAATGAGCTGGCTCAAAACAGTAGAGACG 809
Query 810 GAAG-AACGTGTGACGAAAGAATCAACTCAGCGAACAGAATCTTTAACAGCAAACTCATA 868
| | ||| ||||||||||| ||||| || || ||||||||||| ||||| || || |
Sbjct 810 G-GGTAACTTGTGACGAAAGGATCAATTCCGCAAACAGAATCTTCAACAGTAAGCTTGTG 868
Query 869 TCTATAGTCGACGC-TTTTAACCAGAACACACCAGATGCAAAATTCACTTACATCAACGC 927
||| | || || | ||| || || |||||||||| || || ||||||||||| || ||
Sbjct 869 TCTCTGGTTGA-TCATTTCAATCAAAACACACCAGGCGCCAAGTTCACTTACATTAATGC 927
Query 928 TTATGGCATCTTCCAAGACATTATTA-CAAACCCTGCTCGCTACGGGTTTAGAGTGACAA 986
|||||| ||||||||||||| | || | || ||| ||||||| |||||||| || ||||
Sbjct 928 TTATGGTATCTTCCAAGACA-TGGTAGCTAATCCTTCTCGCTATGGGTTTAGGGTTACAA 986
Query 987 ATGCAGGATGTTGTGGAGTTGGGAGGAACAATGGACAGATAACTTGTCTTCCAGGTCAAG 1046
| || |||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 987 ACGCGGGATGTTGTGGAGTTGGGAGGAACAATGGACAGATAACTTGTCTCCCGGGTCAAG 1046
Query 1047 CACCATGTCTAAATAGGAATGAGTATGTGTTTTGGGATGCGTTTCATCCCGGTGAAGCTG 1106
| |||||||| || ||| | |||| |||||| ||||| ||||||||||| || ||||| |
Sbjct 1047 CTCCATGTCTGAACAGGGACGAGTTTGTGTTCTGGGACGCGTTTCATCCAGGAGAAGCCG 1106
Query 1107 CGAATATTGTTATTGGAAGACGATCTTTTAAGCGAGAAGCTGCTTCTGATGCTCATCCTT 1166
||||| |||| || || || ||||||||| || ||||| |||||||||||||||||||||
Sbjct 1107 CGAATGTTGTCATCGGTAGTCGATCTTTTCAGAGAGAATCTGCTTCTGATGCTCATCCTT 1166
Query 1167 ATGATATTCAGCAGCTAGCATCT-CTCTA 1194
||||||| |||||||| || ||| |||||
Sbjct 1167 ATGATATCCAGCAGCTTGC-TCTGCTCTA 1194
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55421306475
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5