BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G45690.1 Length=941 Score E Sequences producing significant alignments: (Bits) Value Ahg356437 jgi|Araly1|356437|fgenesh1_pg.C_scaffold_8000224 1208 0.0 > Ahg356437 jgi|Araly1|356437|fgenesh1_pg.C_scaffold_8000224 Length=744 Score = 1208 bits (654), Expect = 0.0 Identities = 716/746 (96%), Gaps = 4/746 (1%) Strand=Plus/Plus Query 58 ATGGCGTCGAGCGATGAGCGTCCAGGAGCGTATCCGGCACGTGACGGATCAGAGAACTTA 117 ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| Sbjct 1 ATGGCGTCGAGCGATGAGCGTCCGGGAGCGTATCCGGCACGTGACGGAGCAGAGAACTTA 60 Query 118 CCTCCGGGAGATCCAAAGACGATGAAGACGGTGGTGATGGATAAAGGAGCGGCGATGATG 177 ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| Sbjct 61 CCTCCGGGAGATCCAAAGACGATGAAGACCGTGATGATGGATAAAGGAGCGGCGATGATG 120 Query 178 CAATCGTTGAAACCGATCAAACAGATGAGTCTCCATTTGTGTTCTTTCGCTTGTTATGGT 237 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 121 CAATCGTTGAAACCGATCAAACAAATGAGTCTCCATTTGTGTTCTTTCGCTTGTTATGGT 180 Query 238 CACGATCCTAGCCGTCAGATTGAAGTCAACTTCTATGTTCATCGACTCAACCAAGACTTT 297 || ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| Sbjct 181 CATGATCCTAGCCGTCAGATCGAAGTCAATTTCTATGTTCATCGACTCAACCAAGACTTT 240 Query 298 CTTCAATGTGCTGTTTACGATTGCGACTCCTCTAAACCCCATCTCATCGGGATCGAGTAT 357 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 CTTCAGTGTGCTGTTTACGATTGCGACTCCTCTAAACCCCATCTCATCGGGATCGAGTAC 300 Query 358 ATTGTGTCGGAGAGGTTATTTGAGAGTCTTGATCCGGAGGAGCAAAAGCTTTGGCACTCT 417 ||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||| Sbjct 301 ATTGTGTCGGAGAGGTTATTTGAGAATCTTGCGCCAGAGGAGCAAAAGCTTTGGCACTCT 360 Query 418 CATGACTATGAGATCCAAACAGGCCTTCTAGTAACTCCAAGGGTCCCTGAGCTTGTAGCT 477 ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| Sbjct 361 CATGACTATGAGATCCAAACAGGTCTTCTAATAACTCCAAGGGTCCCTGAGCTTGTAGCT 420 Query 478 AAGACAGAGCTTGAAAATATTGCCAAAACTTATGGGAAGTTTTGGTGCACTTGGCAGACC 537 ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 AAGCCAGAGCTTCAAAATATTGCCAAAACTTATGGGAAGTTTTGGTGCACTTGGCAGACC 480 Query 538 GATCGCGGGGATAAATTGCCACTTGGTGCACCATCACTTATGATGTCACCACAAGACGTG 597 ||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||| Sbjct 481 GATCGTGGGGATAAATTGCCACTAGGTGCACCATCACTGATGATGTCACCACAAGACGTG 540 Query 598 AATATGGGAAAGATCAAGCCAGGGCTATTGAAGAAACGTGACGATGAGTATGGAATCTCG 657 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 AATATGGGAAAGATCAAGCCAGGGCTATTGAAGAAACGTGACGATGAGTATGGAATCTCG 600 Query 658 ACGGAATCTTTGAAGACGTCTCGAGTTGGAATTATGGGACCGGAGAAGAAAAAT-TCGAT 716 ||||||||||| ||||||||||||||||| |||||||||||||||| ||||||| | ||| Sbjct 601 ACGGAATCTTTAAAGACGTCTCGAGTTGGGATTATGGGACCGGAGAGGAAAAATCT-GAT 659 Query 717 GGCTGATTATTGGGTTCATCACGGAAAAGGATTAGCGGTTGACATAATCGAAACTGAGAT 776 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 660 GGCTGATTATTGGGTTCATCACGGAAAAGGATTAGCGGTTGATATAATCGAAACTGAGAT 719 Query 777 GCAGAAAT-TGGCTCCGTTCCCGTAA 801 | |||||| || |||||||||||||| Sbjct 720 GAAGAAATGTG-CTCCGTTCCCGTAA 744 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34920591972 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5