BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G45690.1
Length=941
Score E
Sequences producing significant alignments: (Bits) Value
Ahg356437 jgi|Araly1|356437|fgenesh1_pg.C_scaffold_8000224 1208 0.0
> Ahg356437 jgi|Araly1|356437|fgenesh1_pg.C_scaffold_8000224
Length=744
Score = 1208 bits (654), Expect = 0.0
Identities = 716/746 (96%), Gaps = 4/746 (1%)
Strand=Plus/Plus
Query 58 ATGGCGTCGAGCGATGAGCGTCCAGGAGCGTATCCGGCACGTGACGGATCAGAGAACTTA 117
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 1 ATGGCGTCGAGCGATGAGCGTCCGGGAGCGTATCCGGCACGTGACGGAGCAGAGAACTTA 60
Query 118 CCTCCGGGAGATCCAAAGACGATGAAGACGGTGGTGATGGATAAAGGAGCGGCGATGATG 177
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 61 CCTCCGGGAGATCCAAAGACGATGAAGACCGTGATGATGGATAAAGGAGCGGCGATGATG 120
Query 178 CAATCGTTGAAACCGATCAAACAGATGAGTCTCCATTTGTGTTCTTTCGCTTGTTATGGT 237
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 121 CAATCGTTGAAACCGATCAAACAAATGAGTCTCCATTTGTGTTCTTTCGCTTGTTATGGT 180
Query 238 CACGATCCTAGCCGTCAGATTGAAGTCAACTTCTATGTTCATCGACTCAACCAAGACTTT 297
|| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 181 CATGATCCTAGCCGTCAGATCGAAGTCAATTTCTATGTTCATCGACTCAACCAAGACTTT 240
Query 298 CTTCAATGTGCTGTTTACGATTGCGACTCCTCTAAACCCCATCTCATCGGGATCGAGTAT 357
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CTTCAGTGTGCTGTTTACGATTGCGACTCCTCTAAACCCCATCTCATCGGGATCGAGTAC 300
Query 358 ATTGTGTCGGAGAGGTTATTTGAGAGTCTTGATCCGGAGGAGCAAAAGCTTTGGCACTCT 417
||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||
Sbjct 301 ATTGTGTCGGAGAGGTTATTTGAGAATCTTGCGCCAGAGGAGCAAAAGCTTTGGCACTCT 360
Query 418 CATGACTATGAGATCCAAACAGGCCTTCTAGTAACTCCAAGGGTCCCTGAGCTTGTAGCT 477
||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 361 CATGACTATGAGATCCAAACAGGTCTTCTAATAACTCCAAGGGTCCCTGAGCTTGTAGCT 420
Query 478 AAGACAGAGCTTGAAAATATTGCCAAAACTTATGGGAAGTTTTGGTGCACTTGGCAGACC 537
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AAGCCAGAGCTTCAAAATATTGCCAAAACTTATGGGAAGTTTTGGTGCACTTGGCAGACC 480
Query 538 GATCGCGGGGATAAATTGCCACTTGGTGCACCATCACTTATGATGTCACCACAAGACGTG 597
||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 481 GATCGTGGGGATAAATTGCCACTAGGTGCACCATCACTGATGATGTCACCACAAGACGTG 540
Query 598 AATATGGGAAAGATCAAGCCAGGGCTATTGAAGAAACGTGACGATGAGTATGGAATCTCG 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 AATATGGGAAAGATCAAGCCAGGGCTATTGAAGAAACGTGACGATGAGTATGGAATCTCG 600
Query 658 ACGGAATCTTTGAAGACGTCTCGAGTTGGAATTATGGGACCGGAGAAGAAAAAT-TCGAT 716
||||||||||| ||||||||||||||||| |||||||||||||||| ||||||| | |||
Sbjct 601 ACGGAATCTTTAAAGACGTCTCGAGTTGGGATTATGGGACCGGAGAGGAAAAATCT-GAT 659
Query 717 GGCTGATTATTGGGTTCATCACGGAAAAGGATTAGCGGTTGACATAATCGAAACTGAGAT 776
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 660 GGCTGATTATTGGGTTCATCACGGAAAAGGATTAGCGGTTGATATAATCGAAACTGAGAT 719
Query 777 GCAGAAAT-TGGCTCCGTTCCCGTAA 801
| |||||| || ||||||||||||||
Sbjct 720 GAAGAAATGTG-CTCCGTTCCCGTAA 744
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34920591972
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5