BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G45700.1
Length=848
Score E
Sequences producing significant alignments: (Bits) Value
Ahg948401 jgi|Araly1|948401|scaffold_800288.1 1371 0.0
> Ahg948401 jgi|Araly1|948401|scaffold_800288.1
Length=860
Score = 1371 bits (742), Expect = 0.0
Identities = 809/841 (96%), Gaps = 5/841 (1%)
Strand=Plus/Plus
Query 11 TCTCTCTCT-TTCTTCTTCAATGGCGACGAAACTCATACTCAAGAAAACGACAAAATCCA 69
||||| | | |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 TCTCTGTTTCTTCTTCTTCAATGGCGACGAAACTCATACTCAAGAAAACGACAAAATCAA 60
Query 70 TCAGCCGTCACCAACGTAACTACCTCCGCCGTCACCGGAAATCTCAGATCGGATGCTCAC 129
||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 61 TCAACCGTCACCAACGTAACTACCTCCGCCGTCACCGGAAAACTCAGATCGGATGCTCAC 120
Query 130 CGTCTCCGGCCACAACCACCGTAATCGCCACCATCAACAAATCGATCTACAGATGTCATC 189
|||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 121 CGTCCCCGGTTACAACCACCGTCATCGCCACCATCAACAAATCGATCTACAGATGTCACC 180
Query 190 GAA-CTTTTCTCTGTTTGTTTTCTCGT-CACGCAACAAAAGGATTCAAAATCCTCAAACC 247
||| | ||||||||||| ||||||| | | || ||| |||||||||||||||||||||||
Sbjct 181 GAAGC-TTTCTCTGTTTATTTTCTCTTCCTCG-AACCAAAGGATTCAAAATCCTCAAACC 238
Query 248 TCGCGAAGATTTTCAGAATTCTCCGTATTCATTGTTTCACGAAAGATCTGGTAAATCATT 307
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 239 TCGCGAAGATTTTCAAAATTCTCCGTATTCATTGTTTCACGAAAGATCTGATAAATCATT 298
Query 308 CGACGAGACGAAGAAGACGATCGTGTTAGATCTAGACGAAACTCTTGTTCATTCATCAAT 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 CGACGAGACGAAGAAGACGATCGTGTTAGATCTAGACGAAACTCTTGTTCATTCATCAAT 358
Query 368 GGAGAAACCAGAAGTACCGTATGATTTCGTCGTGAATCCCAAAATCGACGGTCAGATCTT 427
||||||||||||||| || || |||||||| |||||||||||||||||||||||||||||
Sbjct 359 GGAGAAACCAGAAGTTCCTTACGATTTCGTTGTGAATCCCAAAATCGACGGTCAGATCTT 418
Query 428 AACGTTTTTCGTGATCAAACGGCCAGGAGTCGACGAGTTTTTGAAGAAGATCGGAGAAAA 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 AACGTTTTTCGTGATCAAACGGCCAGGAGTCGACGAGTTTTTGAAGAAGATCGGAGAAAA 478
Query 488 GTACCAGATCGTTGTTTTCACGGCGGGATTGAGAGAGTACGCGTCGTTAGTGCTCGATAA 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 GTACCAGATCGTTGTTTTCACGGCGGGATTGAGAGAGTACGCGTCGTTAGTGCTCGATAA 538
Query 548 ATTGGATCCAGAGCGGCGCGTGATATCGCGTAGCTTTTACAGAGACGCGTGTAGCGAAAT 607
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 539 ATTGGATCCAGAGCGGCGCGTGATCTCGCGAAGCTTTTACAGAGACGCGTGTAGCGAAAT 598
Query 608 TGATGGGAGGTTAGTGAAGGATTTAGGGTTTGTGATGAGAGATTTGAGGCGCGTGGTGAT 667
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 TGATGGGAGGTTAGTGAAGGATTTAGGGTTTGTGATGAGAGATTTGAGGCGCGTGGTGAT 658
Query 668 TGTTGATGATAATCCGAACTCGTACGCGCTTCAACCGGAGAATGCGTTTCCGATTAAACC 727
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 659 TGTTGATGATAATCCGAACTCGTACGCGCTTCAACCGGAGAACGCGTTTCCGATTAAACC 718
Query 728 GTTTTCTGATGATTTGGAAGATGTTGAGTTGAAGAAACTTGGTGAGTTTTTGTATGGTGA 787
|||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 719 GTTTTCGGATGATTTGGGAGATGTTGAGTTGAAGAAACTTGGTGAGTTTTTTTATGGTGA 778
Query 788 TTGTGTCAAGTTTGAAGATATGAGAGTTGCTTTGAAGGAGTTTGTTGGAAGAGATGAATG 847
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 779 TTGTGTCAAGTTTGAAGATATGAGAGTTGCTTTGAAGGAGTTTGTTGGAAGAGATTAATG 838
Query 848 A 848
|
Sbjct 839 A 839
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31375160691
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5