BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G45710.1
Length=1515
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494414 jgi|Araly1|494414|fgenesh2_kg.8__230__AT5G45710.1 1871 0.0
> Ahg494414 jgi|Araly1|494414|fgenesh2_kg.8__230__AT5G45710.1
Length=1379
Score = 1871 bits (1013), Expect = 0.0
Identities = 1311/1441 (91%), Gaps = 76/1441 (5%)
Strand=Plus/Plus
Query 7 GTTGTTGTTGCCATTCATACGCGCTTCCATCAACCCTTTGGTCTTGGAAGCCAAATCAAA 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GTTGTTGTTGCCATTCATACGCGCTTCCATCAACCCTTTGGTCTTGGAAGCCAAATCAAA 60
Query 67 CCTTTCCTTCAATCCTCAAATTTTCGAAAATTTTCTCTTTTGCTTTACGTTCTCTCAATT 126
|| | |||||| | | || ||| ||||||||||||||||||||||
Sbjct 61 CC--T--TTCAAT-C-C------TC--AAA--------TTTGCTTTACGTTCTCTCAATT 98
Query 127 CTTATTTGTAAGAAAGTTTGTTCCTTTAATCAATCAAATCAAAGAGACTTTTGAAGATTG 186
| ||||| ||||||||| ||||||||||||||||||||| | || ||||
Sbjct 99 CATATTTTTAAGAAAGTCTGTTCCTTTAATCAATCAAAT--------C-----AA-ATTG 144
Query 187 TTTCCCAATTTGCGTCAATCGGGATCGAGTCAAATCTGAAATCTTCTCCACTCATCATCT 246
||||||||||||||||||||||||||||||||||||| || | ||||||||||||||
Sbjct 145 TTTCCCAATTTGCGTCAATCGGGATCGAGTCAAATCT----TC-T-TCCACTCATCATCT 198
Query 247 -GACTATAAGACTT-AATCAAGGGACTTTTTGTTCGGGTTTGGTTTTAAACGTCTTGGAT 304
||| || ||| || |||||||||| ||||||||| | || | ||||||||
Sbjct 199 GGACAAT-AGA-TTGAATCAAGGGAATTTTTGTTC--G---GG---T-----TCTTGGAT 243
Query 305 TCGAAGTGGTTAAGGTATGGATGAAAATAATGGAGGTTCAAGCTCACTTCCACCTTTCCT 364
| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 244 TTGAAGTGGTTAAGGGATGGATGAAAATAATGGAGGTTCAAGCTCACTTCCACCTTTCCT 303
Query 365 TACTAAAACATATGAAATGGTTGATGATTCTTCTTCTGACTCGGTCGTTGCTTGGAGCGA 424
||||||||||||||||||||| |||||||| |||||||| ||| | ||| ||||||||||
Sbjct 304 TACTAAAACATATGAAATGGTAGATGATTCGTCTTCTGATTCGATTGTTTCTTGGAGCGA 363
Query 425 AAACAACAAAAGCTTCATCGTCAAGAATCCAGCAGAGTTTTCAAGAGACCTTCTTCCG-A 483
|||||||||||| || ||||||||||| ||||| |||||||||||||||||||||||| |
Sbjct 364 AAACAACAAAAGTTTTATCGTCAAGAACCCAGCGGAGTTTTCAAGAGACCTTCTTCCGAA 423
Query 484 GATTCTTCAAGCATAAGAATTTCTCAAGTTTCATCCGTCAGCTTAATACATATGGTTTTC 543
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 424 G-TTCTTCAAGCATAAGAATTTCTCAAGTTTCATCCGTCAGCTTAATACATATGGTTTTC 482
Query 544 GAAAAGTAGATCCTGAGAAATGGGAATTCTTGAATGATGATTTTGTTAGAGGTCGACCTT 603
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 483 GAAAAGTTGATCCTGAGAAATGGGAATTCTTGAATGATGATTTTGTTAGAGGTCGACCTT 542
Query 604 ACCTTATGAAGAACATTCATAGACGAAAACCGGTTCATAGCCACTCGTTAGTGAATCTAC 663
|||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 543 ACCTGATGAAGAACATTCATAGACGAAAACCGGTTCATAGCCACTCGTTACAGAATCTAC 602
Query 664 AAGCGCAAAATCCTTTGACGGAATCAGAAAGACGGAGCATGGAGGATCAGATAGAAAGAC 723
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 603 AAGCGCAAAATCCTTTGACGGAATCAGAAAGACGGAGCATGGAGGATCAGATCGAAAGAC 662
Query 724 TGAAAAATGAGAAAGAAGGCCTTCTTGCGGAGTTACAGAACCAAGAGCAAGAACGGAAAG 783
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 663 TGAAAAGGGAGAAAGAAGGCCTTCTTGCGGAGTTACAGAACCAAGAGCAAGAACGGAAAG 722
Query 784 AGTTT-GAGCTGCAAGTAACGACATTGAAAGATCGGTTACAACATATGGAACAACATCAG 842
| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 723 A-TTTCGAGCTGCAAGTAACGACATTGAAAGATCGGTTACAACATATGGAGCAACATCAG 781
Query 843 AAATCAATAGTGGCATATGTTTCACAGGTTTTGGGAAAACCAGGACTTTCACTAAACCTC 902
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 782 AAATCAATAGTGGCATATGTTTCACAGGTTTTGGAAAAACCAGGACTTTCTCTAAACCTC 841
Query 903 GAAAACCATGAGAGAAGAAAAAGAAGATTTCAAGAGAACTCTCTTCCTCCAAGCAGTTCA 962
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 842 GAAAACCATGAGAGAAGAAAAAGAAGATTTCAAGAGAATTCTCTTCCTCCAAGCAGTTCA 901
Query 963 CACATAGAACAGGTCGAAAAGTTAGAATCTTCGCTAACGTTTTGGGAGAATCTTGTATCG 1022
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 902 CACATAGAACAGGTCGAAAAGTTAGAATCTTCTCTAACTTTTTGGGAGAATCTTGTATCG 961
Query 1023 GAATCATGCGAGAAGAGCGGTTTGCAGTCATCAAGCATGGATCATGATGCAGCTGAGTCA 1082
||||||||||| ||||||||| |||||||| |||||||||||| ||||||||||||||||
Sbjct 962 GAATCATGCGAAAAGAGCGGTCTGCAGTCACCAAGCATGGATCTTGATGCAGCTGAGTCA 1021
Query 1083 AGTCTAAGTATTGGCGATACACGACCCAAATCATCGAAGATTGATATGAACTCAGAGCCG 1142
|||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||
Sbjct 1022 AGTCTAAGTATTGGCGATACCCGACCCAAATCATCAAAGATAGATATGAACTCAGAGCCA 1081
Query 1143 CCCGTTACCGTTACTGCGCCTGCTCCAAAAACAGGCGTTAACGATGACTTTTGGGAACAA 1202
|||||||||||||| || ||||||||||||||||| |||||||| |||||||||||||||
Sbjct 1082 CCCGTTACCGTTACCGCACCTGCTCCAAAAACAGGGGTTAACGACGACTTTTGGGAACAA 1141
Query 1203 TGTTTGACAGAGAACCCTGGATCAACCGAGCAACAAGAAGTTCAGTCAGAGAGAAGAGAT 1262
||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1142 TGTTTGACAGAAAACCCGGGATCAACAGAGCAACAAGAAGTTCAGTCAGAGAGAAGAGAT 1201
Query 1263 GTCGGTAATGATAATAATGGTAATAAGATTGGAAATCAAAGGACGTATTGGTGGAATTCA 1322
|||| ||| ||||| || |||| |||||||||||||||||||| |||||||||||||
Sbjct 1202 GTCGATAACGATAAG---GGAAATACGATTGGAAATCAAAGGACGTTTTGGTGGAATTCA 1258
Query 1323 GGGAATGTAAATAACA---TTACAGAGAAAGCTTCTTGACATGAATGAGGTTTTTGTAAA 1379
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1259 GGGAATGTAAATAACAACATTACAGAGAAAGCTTCTTGATATGAATGAGGTTTTTGTAAA 1318
Query 1380 ATAG-TTTT-CTTTTGGT--T-CCACTGAGATTATTGTAT--GTGTTCATTATTTATTAC 1432
|||| |||| |||||| | | || ||||||||||||||| ||||||||||||||||||
Sbjct 1319 ATAGATTTTTCTTTTGTTACTTCCTCTGAGATTATTGTATTCGTGTTCATTATTTATTAC 1378
Query 1433 T 1433
|
Sbjct 1379 T 1379
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56716374805
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5