BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G45720.1
Length=3546
Score E
Sequences producing significant alignments: (Bits) Value
Ahg330841 jgi|Araly1|330841|fgenesh1_pm.C_scaffold_8000184 4250 0.0
Ahg492977 jgi|Araly1|492977|fgenesh2_kg.7__2410__AT4G18820.1 191 3e-47
> Ahg330841 jgi|Araly1|330841|fgenesh1_pm.C_scaffold_8000184
Length=2913
Score = 4250 bits (2301), Expect = 0.0
Identities = 2732/2934 (93%), Gaps = 54/2934 (2%)
Strand=Plus/Plus
Query 501 ATGAGTAGGGTTGCTTCTTCTC-GAGTTCTCAAAGATTCAAATGGAGACATCGGTGAGCA 559
|||||||||||||||||||||| || |||| |||||||||||||||||||||||||||||
Sbjct 1 ATGAGTAGGGTTGCTTCTTCTCGGA-TTCTGAAAGATTCAAATGGAGACATCGGTGAGCA 59
Query 560 TCTTCGTAACCATATTCACTTAACCAACTGTATTCATTTGAAGAATCATATGCACAACAA 619
|||||||||||||||||| ||||||||||||||||| ||||||||||||||| | ||||
Sbjct 60 TCTTCGTAACCATATTCATTTAACCAACTGTATTCACTTGAAGAATCATATG--C-ACAA 116
Query 620 CAACAAACAGAGTCCGGTTTT-AACTGACCGGTCTCTTCTTATGAGAGATCTTGTCGTTC 678
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 117 CAACAAACAGAGTCCGGTTTTAAAC-GACCGGTCTCTTCTTATGAGAGATCTTGTCGTTC 175
Query 679 TTCAGAGATCAAGATCACTTCGTGACCCATCAGCGAGCCCGAATTTGAAAGAAGATCATC 738
| |||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 176 TCCAGAGATCAACATCACTTCGTGACCCATCAGCGAGCCCGAAGTTGAGAGAAGATCATA 235
Query 739 AGGACTCACGTGAGGGAAGAAGAAGATCTGGTCTTAGGTTGTCTGGTTCTTCTCCAATTG 798
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 236 AGGATTCACGTGAGGGAAGAAGAAGATCTGGTCTTAGGTTGTCTGGTTCTTCTCCAATTG 295
Query 799 TGAGTTTTGGAACATCTAAAGTTACTCCTTCTGATGAAAAGTTTGATAGGTCGAGTAGGA 858
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 296 TGAGTTTTGGGACATCTAAAGTAACTCCTTCTGATGAAAAGTTTGATAGGTCGAGTAGGA 355
Query 859 AGAGTTATAGAGTAGAAGAAGTTAATGAGGTTTATAGTGTTCCTTCCGTGAAGTCGGTAT 918
|||||||| |||||||||| || |||||| ||||||||||| |||| ||||| |||||||
Sbjct 356 AGAGTTATGGAGTAGAAGATGTGAATGAGTTTTATAGTGTTGCTTCGGTGAAATCGGTAT 415
Query 919 CGAAAGATAGGATTAATAAGAAGGTTAATGAGGCTATTGTCAAGACTCTT-TCTGATCAG 977
||||||||||| ||||| ||||||||||||| |||| |||||||| || |||||||||
Sbjct 416 CGAAAGATAGGGTTAAT---AAGGTTAATGAGGGTATTTTCAAGACT-TTGTCTGATCAG 471
Query 978 TTAAATGAGGTTGGTGGTGATAGTGATGATTTAGTTTCTTGTAATGTTAGACCGCGCGGT 1037
|||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 472 TTAAATGAGGTTGGAGGTGATAGTGATGATTTAGTTTCTTGTAATGTTGGACCGCGCTGT 531
Query 1038 GATGGGTGTAGAAGACGGAAGTTTAGAGGGACGAGGAGAGCGGGACGGGCCGTTAATGTT 1097
||||| | | ||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 532 AATGGGCGAAAAAGACGGAAGTTTAGAGGGACGAGGAGAGCGGGACGGGCGGTTATTGTT 591
Query 1098 AGAGACAATGCTGCTGGTAATGAGAGTGAGATGTCTATTGCTTCTAACTCAGTGCCTCGT 1157
||||| |||| | |||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 592 AGAGATAATG-T--TGGTAATGAGAGTGAGATGTCTATTGCTTCAAACTCGGTGCCTCGT 648
Query 1158 GGTgagaagtatgagggagaagaaggaggagg-ag-ga-agagatagagaaca-ga---- 1209
|||||||||||||||||||||||||||||||| || || ||||| | |||||| ||
Sbjct 649 GGTGAGAAGTATGAGGGAGAAGAAGGAGGAGGAAGAGATAGAGA-ACAGAACATGAGTGG 707
Query 1210 a-C--AT----G--A--GTTGTGGAATACCGTTTAATTGGTCAAGAATTCATCATAGAGG 1258
| | | | | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 708 AGCTGTTCCGAGAAACGGTTGTGGAATACCGTTTAATTGGTCAAGAATTCATCATAGAGG 767
Query 1259 CAAAACTTTTCTTGATATAGCTGGTAGGAGTTTATCTTGTGGAATATCTGATTCAAAGGG 1318
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 768 TAAAACTTTTCTTGATATAGCTGGTAGGAGTTTATCTTGTGGAATGTCTGATTCAAAGGG 827
Query 1319 AAGGAAAGGCGAAGC-TGGTACGCCGATGTTTTCTGATTCAAGCTCTTCTGATCGCGAGG 1377
||||||||||||| | ||||| ||| ||||| |||||||||||||| |||||||||||||
Sbjct 828 AAGGAAAGGCGAA-CTTGGTATGCCAATGTTGTCTGATTCAAGCTCCTCTGATCGCGAGG 886
Query 1378 CGTTACCTCTTTTAGTCGATAGCGCAGACAATGAAGAATGGGTGCATGATTACTCAGGCG 1437
||| |||||||||||||||||||||||| |||||||||||||||||||||||||| || |
Sbjct 887 CGTCACCTCTTTTAGTCGATAGCGCAGAGAATGAAGAATGGGTGCATGATTACTCGGGTG 946
Query 1438 AGTTGGGTATATTCGCTGACAATTTGCTCAAGAATGGAAAAGATTCAGTCATTGGTAAGA 1497
| |||||||| ||||| ||||||||||||||||||||||||||||||| | ||||||||
Sbjct 947 AATTGGGTATCTTCGCCGACAATTTGCTCAAGAATGGAAAAGATTCAGGCTTTGGTAAGG 1006
Query 1498 AGAGTAGCCGTAAAAATACTCGGTGGCATCAAAGTTTTACGCAGAAGTACGCTCCAAGAA 1557
|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1007 AGAGCAGCCGTAAAAATGCTCGGTGGCATCAAAGTTTTACGCAGAAGTACGCTCCAAGAA 1066
Query 1558 CATTCCGGGATCTTTTGGGACAGAATCTTGTGGTGCAGGCTCTGTCTAACGCTATAGCTA 1617
||||||||||||||||||||||||| || || || || ||||| ||||||||| | ||||
Sbjct 1067 CATTCCGGGATCTTTTGGGACAGAACCTGGTTGTACAAGCTCTATCTAACGCTGTTGCTA 1126
Query 1618 AACGAAGAGTTGGACTTCTTTACGTATTCCACGGTCCAAATGGAACCGGAAAAACATCTT 1677
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1127 AACGAAGAGTTGGACTTCTTTACGTATTCCATGGTCCAAATGGAACCGGAAAAACATCTT 1186
Query 1678 GTGCTCGGGTATTTGCTAGAGCTTTGAACTGCCATTCTACGGAACAATCAAAGCCTTGCG 1737
|||||||| |||||||||||||||||||||||||||| || ||||||||||||||||| |
Sbjct 1187 GTGCTCGGATATTTGCTAGAGCTTTGAACTGCCATTCGACAGAACAATCAAAGCCTTGTG 1246
Query 1738 GTGTATGCAGTTCTTGTGTTTCTTATGATGATGGTAAGAACCGGTACATTCGAGAAATGG 1797
| |||||| |||| |||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 1247 GCGTATGCGGTTCGTGTGTTTCTTATGATGGTGGTAAGAACCGGTACATTCGGGAAATGG 1306
Query 1798 GTCCTGTAAAAAGTTTCGACTTTGAGAATTTGCTCGATAAAACGAACATTCGTCAGCAGC 1857
| |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 1307 GACCTGTAAAAAGTTTCGACTTCGAGAATTTGCTCGATAAAATGAACATTCGTCAGCAGC 1366
Query 1858 AAAAGCAGCAGCTTGTGTTAATATTCGATGATTGCGATACTATGTCAACAGATTGTTGGA 1917
||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1367 AAAGGCAGCAGCTTGTGTTCATATTCGATGATTGCGATACTATGTCAACAGATTGTTGGA 1426
Query 1918 ATACGCTATCGAAAATAGTGGACCGAGCACCTCGTCGTGTGGTTTTCGTTCTTGTATGTT 1977
|| |||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 1427 ATGCGCTTTCGAAAATAGTGGATCGAGCACCTCGTCGTGTGGTTTTCATTCTTGTATGTT 1486
Query 1978 CGAGTCTTGATGTTTTGCCTCACATTATCGTTTCGAGGTGCCAGAAATTCTTTTTCCCTA 2037
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1487 CGAGTCTTGATGTTTTGCCTCACATTATTGTTTCGAGGTGCCAGAAATTCTTTTTCCCTA 1546
Query 2038 AGCTCAAAGACGTAGATATCATCGATTCTTTGCAACTTATTGCATCAAAAGAAGAGATTG 2097
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1547 AGCTCAAAGACGCAGATATCATCGATTCTTTGCAACTTATTGCATCAAAAGAAGAGATTG 1606
Query 2098 ATATCGATAAAGATGCGTTGAAGCTTGTTGCTTCGAGATCAGATGGTTCCTTGAGAGACG 2157
||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 1607 ATATCGAAAAAGATGCGTTAAAGCTTGTTGCTTCGAGATCTGATGGTTCCTTGAGAGACG 1666
Query 2158 CGGAAATGACTCTAGAACAGCTGAGTTTGCTTGGAACAAGAATCTCTGTTCCTTTAGTTC 2217
|||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||
Sbjct 1667 CGGAAATGACTCTAGAACAGCTGAGTTTGCTTGGCACAAGAGTATCTGTTCCTTTAGTTC 1726
Query 2218 AAGAAATGGTTGGGTTAATATCTGATGAGAAATTAGTTGATCTTCTTGATCTAGCCTTAT 2277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1727 AAGAAATGGTTGGGTTAATATCTGATGAGAAATTAGTTGATCTTCTTGATCTAGCCTTAT 1786
Query 2278 CCGCGGATACTGTAAACACCGTAAAGAACCTAAGAATAATAATGGAAACCGGCCTAGAAC 2337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1787 CCGCGGATACTGTAAACACCGTAAAGAACCTAAGAATAATAATGGAAACCGGCCTAGAAC 1846
Query 2338 CATTAGCTTTGATGTCACAGCTCGCAACCGTCATAACCGATATCCTCGCGGGAAGCTATG 2397
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 1847 CATTAGCTTTGATGTCACAGCTGGCAACCGTCATAACTGATATCCTCGCGGGAAGCTATG 1906
Query 2398 ACTTCACTAAAGATCAATGTAAAAGAAAGTTTTTCCGGCGACAACCACTGTCTAAAGAAG 2457
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1907 ATTTCACTAAAGACCAATGTAAAAGAAAGTTTTTCCGGCGACAACCACTGTCTAAAGAAG 1966
Query 2458 ATATGGAGAAGCTGAAACAAGCTTTGAAAACACTATCTGAATCAGAAAAACAGTTGAGAG 2517
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1967 ATATGGAGAAGCTGAAGCAAGCTTTAAAAACACTATCTGAATCAGAAAAACAGTTGAGAG 2026
Query 2518 TATCGAACGATAAACTAACTTGGCTCACTGCTGCATTGCTACAGCTAGCTCCTGATAAAC 2577
|||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2027 TATCGAGCGATAAACTAACTTGGCTCACTGCTGCATTGCTCCAGCTAGCTCCTGATAAAC 2086
Query 2578 AGTACTTGCTTCCGCATAGTTCTTCTGCTGATGCTAGCTTTAACCATACTCCATTGACGG 2637
||||||||||||| ||||||||||| |||||||||||||||| |||||||||| | | ||
Sbjct 2087 AGTACTTGCTTCCACATAGTTCTTCCGCTGATGCTAGCTTTAGCCATACTCCAATAATGG 2146
Query 2638 ATTCGGATCCTTCGAACCATGTTGTAGCCGGAACAAGAAGAGATGATAGTAAGCAAGGTT 2697
||||||||||||| || | | ||||||||||||||||||||||| ||||| ||||||||
Sbjct 2147 ATTCGGATCCTTCAAATGACGCTGTAGCCGGAACAAGAAGAGATGGTAGTATGCAAGGTT 2206
Query 2698 TCAGCTGCAAAAACCGACCTTCCGTTGAAGATATTTGGTTAGCGGTTATCGAGAATGTTC 2757
|||| ||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||
Sbjct 2207 TCAGTTGCAAAAACCGACCTTCGGTTGAAGATATTTGGTTAGCGGTTATTGAGAAAGTTC 2266
Query 2758 GAGTTAACGGCTTACGAGAGTTTCTTTATAAAGAAGGGAAGATCTTTTCGATTAGTATCG 2817
|||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2267 GAGTTAACGGTTTAAAAGAGTTTCTTTATAAAGAAGGGAGGATCTTTTCGATTAGTATCG 2326
Query 2818 GCTCAGCTCCTATGGTGCAGTTAATGTTTAATTCGCCAATAGCGAAATCAACGGCTGAGA 2877
|||||||||||| ||||||| || |||| |||||||||||||||||||||||||||||||
Sbjct 2327 GCTCAGCTCCTACGGTGCAGCTATTGTTCAATTCGCCAATAGCGAAATCAACGGCTGAGA 2386
Query 2878 ATTTCGAAGAACACATTTTGAAAGCGTTTGAGGCTGTTCTTGGATCTCCAGTCACGTTAG 2937
||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 2387 ATTTCAAAGACCACATTTTGAAAGCGTTTGAGGCGGTTCTTGGATCTCCAGTCACGTTGG 2446
Query 2938 AGATGAGAACCGAGTCGAAGAAAGA-CCT-----CG--G-TTTCTCGTCATTACAAGGTT 2988
|| | |||| |||||| |||||| | || || | ||| ||| ||||||||||||
Sbjct 2447 AGTTCAGAATCGAGTCAAAGAAACAACCGAAAAACGTCGATTTATCGCCATTACAAGGTT 2506
Query 2989 TAAGCAACGGTGAGAGATTCCGTGAAAGCGGAAGAAGCGAAATCGTTGAAGTGGCTGACT 3048
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2507 TAAGCAACGGTGAGAGATTCCGTGAAAGCGGAAGAAGCGAAATCGTTGAAGTGGCTGAAT 2566
Query 3049 CTGAATCTCCAATGACTCGAGTTAGAAGGAAACACTTGGAAGCAAGTCAAAACCAAAACC 3108
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 2567 CTGAATCTCCAATGACTCGAACTAGAAGGAAACACTTGGAAGCAAGTCAAAACCAGAA-- 2624
Query 3109 AAAATCAGAACCAGAGCATTGTGAGAGGAAAAGTTTCGTTGGCTCAAGTGATTAAACAAG 3168
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2625 ----TCAGAACCAAAGCATTGTGAGAGGAAAAGTTTCTTTGGCTCAAGTGATTAAACAAG 2680
Query 3169 CTGAAGGAAACAGTTGGTCGAAACACAAAGCTGTGGAGATTGCAAATAAGCTTGAACAAG 3228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2681 CTGAAGGAAACAGTTGGTCGAAACACAAAGCTGTGGAGATTGCAAATAAGCTTGAACAAG 2740
Query 3229 AGAATTTGAAACTTGAACCAAGATCAAGAAGCTTGATATGTTGGAAAGCATCAAGAAGCA 3288
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 2741 AGAATTTGAAACTTGAACCAAGATCAAGAAGCTTGATATGTTGGAAACCATCAAGAACCA 2800
Query 3289 CTCGTCGCAAGCTATCGAGATTGAAGGTGAGAACAAGGAAGT-TACGATTACATTCGTTG 3347
||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||
Sbjct 2801 CTCGTCGCAAGCTATCGAGATTGAAGGTGAGAACAAG-AAGGATACGATTACACTCGTTG 2859
Query 3348 TTGAAGCTTGTCTCTTGTGGGAAATGTCTATCAACGAGATCTCCTCCTAGATAG 3401
|||||| || ||||||||||||||||||||||||| |||||| ||||||| |||
Sbjct 2860 TTGAAGTTTCTCTCTTGTGGGAAATGTCTATCAACTAGATCTTCTCCTAGCTAG 2913
> Ahg492977 jgi|Araly1|492977|fgenesh2_kg.7__2410__AT4G18820.1
Length=3514
Score = 191 bits (103), Expect = 3e-47
Identities = 231/289 (80%), Gaps = 24/289 (8%)
Strand=Plus/Plus
Query 1049 AAGACGGAAGTTTAGAGGGACGAGGAGAGCGGGACGGGCCGTTA-ATGTTAGAGACAATG 1107
||||||||||||||||||||||||||||| |||| || | | || ||||| | ||
Sbjct 738 AAGACGGAAGTTTAGAGGGACGAGGAGAGTT---CGGG--GTAAGA-GT-AGAGATACTG 790
Query 1108 CTGCTGGTAATGAGAGTGAGATGTCTATTGCTTCTAACTCAGTGCCTCGTGGTgagaagt 1167
|| |||||| ||| |||||||||| ||||||| ||| || |||||| |||||||||
Sbjct 791 GTGGTGGTAA-GAG--TGAGATGTCTGTTGCTTCAAACACATTGCCTCAAGGTGAGAAGC 847
Query 1168 atgagggagaagaaggagg-aggaggaagagatagagaaca-gaaCATGA-G-TTGTGGA 1223
||||||||||| ||||||| | || | || | |||||| || | | | | ||||||
Sbjct 848 ATGAGGGAGAA-AAGGAGGGATTTGG--G-GA-ACAGAACATGA-C-TAAAGCTTGTGGG 900
Query 1224 ATACCGTTTAATTGGTCAAGAATTCATCATAGAGGCAAAACTTTTCTTGATATAG-CTGG 1282
|| |||||||||||||| ||||||||||| |||| ||||||||||| |||| || | ||
Sbjct 901 ATTCCGTTTAATTGGTCGAGAATTCATCACCGAGGGAAAACTTTTCTCGATA-AGGCGGG 959
Query 1283 TAGGAGTTTATCTTGTGGAATATCTGATTCAAAGGGAAGGAAAGGCGAA 1331
|||||| || |||||||| || ||||||||||| || |||||||| |||
Sbjct 960 TAGGAGCTTGTCTTGTGGTATGTCTGATTCAAAAGGTAGGAAAGGTGAA 1008
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 133924599387
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5