BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G45740.1

Length=357
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg356432 jgi|Araly1|356432|fgenesh1_pg.C_scaffold_8000219           508    8e-144
  Ahg948398 jgi|Araly1|948398|scaffold_800285.1                        470    4e-132


> Ahg356432 jgi|Araly1|356432|fgenesh1_pg.C_scaffold_8000219
Length=369

 Score =  508 bits (275),  Expect = 8e-144
 Identities = 305/320 (95%), Gaps = 0/320 (0%)
 Strand=Plus/Plus

Query  1    ATGGGTTGTATCGGATCTTCTCAGGCCAGAAATGAAGGCGGAGCAAAAAGGAAGAAAATC  60
            ||||||||||| ||||||||||| ||||||||||||||||||| ||||| ||||||||||
Sbjct  1    ATGGGTTGTATTGGATCTTCTCATGCCAGAAATGAAGGCGGAGTAAAAAAGAAGAAAATC  60

Query  61   ATGAAACCTAAACCGTGGGCACATACTGAGCCAATCACAAGGGCACAACTTACGAACATG  120
            | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  61   AGGAAACCTAAACCGTGGGCACATACTGAGCCAATCACAAGGGCACAACTTACGAATATG  120

Query  121  CGTGAGGAATTTTGGGACACCTCTCCACACTATGGTGGTCAAAGAGAGATATGGGAAGCA  180
            |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||
Sbjct  121  CGTGAGGAATTTTGGGACACTTCTCCACACTATGGTGGTCAAAGAGAGATTTGGGAGGCA  180

Query  181  CTTCGAGCTGCTGCTGAAGCTGACTTGAAACTAGCACAAACTATTGTTGACAGTGCAGGC  240
            ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || 
Sbjct  181  CTTCGAGCTGCTGCTGAAGCTGACTTGAAACTAGCGCAAACTATTGTTGACAGTGCTGGT  240

Query  241  GTGATTGTTCAGAACCGTGACCTAACATTGTGCTGGGATGAAAGAGGTGCTAGATATGAG  300
            |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  241  GTGATTGTCCAGAACCGTGACCTAACATTGTGTTGGGATGAAAGAGGTGCTAGATATGAG  300

Query  301  CTTCCTAGGTACGTTCTAAG  320
            ||||||||||| ||||||||
Sbjct  301  CTTCCTAGGTATGTTCTAAG  320


> Ahg948398 jgi|Araly1|948398|scaffold_800285.1
Length=355

 Score =  470 bits (254),  Expect = 4e-132
 Identities = 288/305 (94%), Gaps = 0/305 (0%)
 Strand=Plus/Plus

Query  53   AGAAAATCATGAAACCTAAACCGTGGGCACATACTGAGCCAATCACAAGGGCACAACTTA  112
            ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  31   AGAAAATCAGGAAACCTAAACCGTGGGCACATACTGAGCCAATCACAAGGGCACAACTTA  90

Query  113  CGAACATGCGTGAGGAATTTTGGGACACCTCTCCACACTATGGTGGTCAAAGAGAGATAT  172
            | || ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct  91   CTAATATGCGTGAGGAATTTTGGGACACTTCTCCACACTATGGTGGTCAAAGAGAGATTT  150

Query  173  GGGAAGCACTTCGAGCTGCTGCTGAAGCTGACTTGAAACTAGCACAAACTATTGTTGACA  232
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  151  GGGAAGCACTTCGAGCTGCTGCTGAAGCTGACTTGAAACTAGCGCAAACTATTGTTGACA  210

Query  233  GTGCAGGCGTGATTGTTCAGAACCGTGACCTAACATTGTGCTGGGATGAAAGAGGTGCTA  292
            |||| || |||||||| ||||| ||||| ||||||||||| |||||||||||||||||||
Sbjct  211  GTGCTGGTGTGATTGTCCAGAATCGTGATCTAACATTGTGTTGGGATGAAAGAGGTGCTA  270

Query  293  GATATGAGCTTCCTAGGTACGTTCTAAGTGAGCCCACGAATCTGATTCGAGAGGAAGGAC  352
            ||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||| ||||
Sbjct  271  GATATGAGCTTCCTAGGTATGTTCTAAGTGATCCCACGAATTTGATTCGAGAGGAGGGAC  330

Query  353  AGTAA  357
             ||||
Sbjct  331  TGTAA  335



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12705811137


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5