BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G45750.1
Length=1056
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494409 jgi|Araly1|494409|fgenesh2_kg.8__225__AT5G45750.1 1496 0.0
Ahg492979 jgi|Araly1|492979|fgenesh2_kg.7__2412__AT4G18800.1 673 0.0
Ahg933714 jgi|Araly1|933714|scaffold_401702.1 76.8 3e-13
> Ahg494409 jgi|Araly1|494409|fgenesh2_kg.8__225__AT5G45750.1
Length=1032
Score = 1496 bits (810), Expect = 0.0
Identities = 925/980 (94%), Gaps = 10/980 (1%)
Strand=Plus/Plus
Query 82 CAAGTTTCAAAtctcatttgggtttttcatttt--g-aaaagaaggacccatttttatct 138
|||||||||||||||||| |||||||||||||| | |||| ||||| ||||||||| |
Sbjct 58 CAAGTTTCAAATCTCATTAGGGTTTTTCATTTTGAGAAAAAAAAGGAACCATTTTTA--T 115
Query 139 ctctctttgttttgttttctcGAATCTGAAGGAGTAAAGTTAAAAGCTTTGAAGGAGAGA 198
||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 116 CTCTC--TGTTTTGTTTTCTCGAATCTGAAGGAGTAAAGTTAAAAGCTTTGAAGGTGAGA 173
Query 199 ATCAATGGCGGGTTACAGAGCAGATGATGAATACGATTACCTATTCAAGGTTGTTCTGAT 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 174 ATCAATGGCGGGTTACAGAGCAGATGATGAATACGATTACCTATTCAAGGTTGTTCTGAT 233
Query 259 AGGTGATTCAGGTGTGGGCAAATCCAATTTGCTTTCACGATTCACGAAGAACGAGTTTAG 318
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 234 AGGTGATTCAGGTGTGGGCAAATCCAATTTGCTTTCACGATTCACCAAGAATGAGTTTAG 293
Query 319 TCTCGAGTCAAAATCCACGATCGGGGTCGAGTTCGCGACTCGGAGTTTGAATGTTGATGA 378
|||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 294 CCTCGAGTCTAAATCCACGATCGGCGTTGAGTTCGCGACTCGGAGTTTGAATGTTGATGA 353
Query 379 TAAAGTCATCAAAGCTCAGATTTGGGATACTGCTGGTCAAGAAAGGTACCGAGCCATCAC 438
|||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 354 GAAAGTCATCAAAGCCCAGATTTGGGATACTGCTGGTCAAGAAAGGTATCGAGCCATCAC 413
Query 439 TAGTGCGTATTACCGAGGAGCTGTTGGAGCGCTTCTTGTCTACGATGTAACCCGACACTC 498
||| ||||| || ||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 414 TAGCGCGTACTATCGAGGAGCTGTTGGAGCACTTCTTGTCTACGATGTGACCCGACACTC 473
Query 499 AACATTTGAAAACGTTGAGACTTGGCTGAAAGAACTCAGAAACCACACTGATCCAAACAT 558
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 474 AACATTTGAAAACGTTGAGACATGGCTGAAAGAGCTCAGAAACCACACTGATCCAAACAT 533
Query 559 TGTAGTCATGCTCGTGGGCAACAAATCTGACCTTCGCCATCTCGTGGCTGTTCAGACTGA 618
|||||||||||||||||| ||||||||||| || || |||||||||||||| ||||| ||
Sbjct 534 TGTAGTCATGCTCGTGGGAAACAAATCTGATCTCCGTCATCTCGTGGCTGTGCAGACAGA 593
Query 619 AGATGCTAAGTCATTCGCCGAGAAAGAATCTCTCTACTTCATGGAAACCTCGGCTCTCGA 678
|||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 594 AGATGCGAAATCATTCGCCGAGAAAGAATCTCTCTACTTCATGGAAACCTCAGCTCTCGA 653
Query 679 AGCCACCAATGTTGAGAACGCTTTCGCCGAAGTCCTCACTCAGATTCACCACATTGTGAG 738
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 654 AGCCACCAATGTTGAGAACGCATTCGCAGAAGTCCTCACTCAGATTCACCACATTGTGAG 713
Query 739 CAAGAAGGCGATGGAAGCTGCGAGCGAATCCGCTAATGTTCCATCGAAAGGAGACAAGAT 798
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 714 CAAGAAGGCGATGGAAGCTGCTAGCGAATCCGCTAATGTTCCATCGAAAGGAGACAAGAT 773
Query 799 CGATATCGGTAAAGATGTTTCAGCTGTGAAGAAAGGTGGATGCTGCTCGAACTAATCAGA 858
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 774 TGATATCGGTAAAGATGTTTCCGCTGTGAAGAAAGGTGGATGCTGCTCGAACTAATAAGA 833
Query 859 GAGTAGAATTATTGTTAACAACCTAAGGATCGGTTTTTGTTAACGGTTC-TATCGAATAT 917
||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||
Sbjct 834 GAGTAGAATTATTGTTAACGACCTGAGGATCGGTTTTTGTTAACGGTTCCTATCGAATAT 893
Query 918 GAAGATTGCTTTTAGGTTGAGTAATGCCCATTTGGTGTATTTCTGTTATTTATCTGA-TC 976
||||||||||||||| |||||||||||||||||||||||||||||||| |||| | | |
Sbjct 894 GAAGATTGCTTTTAGATTGAGTAATGCCCATTTGGTGTATTTCTGTTACTTATATAAATT 953
Query 977 TATCAATGTTATTGTTTGAAAATGCTATGTCAAATTTTCAGAACCCTAAATTATATTTAT 1036
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 954 TATCAATGTTATTGTTTGAAAATGCTTTGTCAAATTTTCAGAACCCTAAATTATATC-AT 1012
Query 1037 CTCAAACAATAGAATTGTTG 1056
|||||||||||| |||||||
Sbjct 1013 CTCAAACAATAGGATTGTTG 1032
Score = 67.6 bits (36), Expect = 2e-10
Identities = 53/60 (88%), Gaps = 5/60 (8%)
Strand=Plus/Plus
Query 1 GTTTGATATTTTCCAATTCCGCGTCTTTCT--CT--GTTGaaatcgaaaaaatttt-caa 55
|||||||||||||||||||||||||||||| || |||||||||||||| || || |||
Sbjct 1 GTTTGATATTTTCCAATTCCGCGTCTTTCTTTCTCTGTTGAAATCGAAAAGATCTTGCAA 60
> Ahg492979 jgi|Araly1|492979|fgenesh2_kg.7__2412__AT4G18800.1
Length=1097
Score = 673 bits (364), Expect = 0.0
Identities = 562/657 (86%), Gaps = 16/657 (2%)
Strand=Plus/Plus
Query 202 AATGGCGGGTTACAGAGCAGATGATGAATACGATTACCTATTCAAGGTTGTTCTGATAGG 261
|||||||||||||||||| |||||||| ||||||||||| |||||||| |||||||| ||
Sbjct 195 AATGGCGGGTTACAGAGCTGATGATGATTACGATTACCTTTTCAAGGTGGTTCTGATCGG 254
Query 262 TGATTCAGGTG-TGGGCAAATCCAATTTGCTTTCACGATTCACGAAGAACGAGTTTAGTC 320
||||||||||| |||| || |||||||||||||| |||||||| | ||||||||||||||
Sbjct 255 TGATTCAGGTGTTGGG-AAGTCCAATTTGCTTTCTCGATTCACCAGGAACGAGTTTAGTC 313
Query 321 TCGAGTCAAAATCCACGATCGGGGTCGAGTTCGCGACTCGGAGTTTGAATGTTGATGATA 380
||||||| ||||| ||||||||||| |||||||||||||| || ||||||||| |||| |
Sbjct 314 TCGAGTCTAAATCAACGATCGGGGTTGAGTTCGCGACTCGTAGCTTGAATGTTAATGAAA 373
Query 381 AAGTCATCAAAGCTCAGATTTGGGATACTGCTGGTCAAGAAAGGTACCGAGCCATCACTA 440
|||| |||||||| ||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 374 AAGTTATCAAAGCCCAGATTTGGGATACTGCTGGTCAAGAAAGATACCGAGCAATCACTA 433
Query 441 GTGCGTATTACCGAGGAGCTGTTGGAGCGCTTCTTGTCTACGATGTAACCCGACACTCAA 500
|||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 434 GTGCTTACTACCGAGGAGCTGTTGGGGCGCTTCTTGTCTACGATGTAACCCGACACTCAA 493
Query 501 CATTTGAAAACGTTGAGACTTGGCTGAAAG-AACTCAGAAACCACACTGATCCAAACATT 559
|||| ||||||||||||| ||||| || | ||||| | |||| ||||| ||||||||
Sbjct 494 CATTCGAAAACGTTGAGAGATGGCT-AAGGGAACTCCGTGACCATACTGACCCAAACATA 552
Query 560 GTAGTCATGCTCGTGGGCAACAAATCTGACCTTCGCCATCTCGTGGCTGTTCAGACTGAA 619
|| || ||||| ||||| |||||||| || ||||||||||| ||||| || || || |||
Sbjct 553 GTTGTGATGCTTGTGGGAAACAAATCCGATCTTCGCCATCTTGTGGCAGTCCAAACCGAA 612
Query 620 GATGCTAAGTCATTCGCCGAGAAAGAATCTCTCTACTTCATGGAAACCTCGGCTCTCGAA 679
||||| || || || || ||||| ||||| |||||||||||||||||||| ||||| |||
Sbjct 613 GATGCAAAATCTTTTGCGGAGAATGAATCACTCTACTTCATGGAAACCTCAGCTCTTGAA 672
Query 680 GCCACCAATGTTGAGAACGC-TTTCGCCGAAGTCCTCACTCAGATTCACCACATTGTGAG 738
| || |||||||||||||| ||| | ||||| |||||||||||| |||| |||||||
Sbjct 673 TCTACTAATGTTGAGAACGCGTTTT-CTGAAGTACTCACTCAGATTTACCATGTTGTGAG 731
Query 739 CAAGAAGGCGATGGAAGCTGCGAGCGA-ATCCGC-TAATGTTCCATCGAAAGGAGACAAG 796
|||||| || ||||| |||| | | | || || ||||||||| ||||||||||| |||
Sbjct 732 CAAGAAAGCAATGGAGGCTG-GT-CAAGATTCGGGTAATGTTCCTTCGAAAGGAGAAAAG 789
Query 797 ATCGATATCGGTAAAGATGTTTCAGCTGTGAAGAAAGGTGGATGCTGCTCGAACTAA 853
|||||| | | ||||| || |||||||||||| || |||||||| ||||||
Sbjct 790 ATCGATGT---T---GATGTCTCCGCTGTGAAGAAAACCGGTTGCTGCTCCAACTAA 840
> Ahg933714 jgi|Araly1|933714|scaffold_401702.1
Length=705
Score = 76.8 bits (41), Expect = 3e-13
Identities = 108/140 (77%), Gaps = 6/140 (4%)
Strand=Plus/Plus
Query 389 AAAGCTCAGATTTGGGATACTGCTGGTCAAGAAAGGTACCGAGCCATCACTAGTGCGTAT 448
||||||||||||||||||||||||||||| ||| ||| ||| ||| ||||| || |||
Sbjct 209 AAAGCTCAGATTTGGGATACTGCTGGTCAGGAACGGTTCCGTGCCGTCACTTCCGCTTAT 268
Query 449 TACCGAGGAGCTGTTGGAGCGCTTCTT-GTCTACGATGTAACCCGAC-ACTCAACATTTG 506
|| || || || || ||||| || | | || |||||| | | ||| | | || || ||||
Sbjct 269 TATCGCGGCGCCGTCGGAGCTCT-CGTCGTTTACGATATTAGCCGTCGA-TCCACGTTTG 326
Query 507 AAAACGTTGAGAC-TTGGCT 525
| | ||||| | | ||||||
Sbjct 327 AGAGCGTTG-GTCGTTGGCT 345
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39304727427
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5