BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G45760.1
Length=1283
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494408 jgi|Araly1|494408|fgenesh2_kg.8__224__AT5G45760.1 1661 0.0
> Ahg494408 jgi|Araly1|494408|fgenesh2_kg.8__224__AT5G45760.1
Length=1194
Score = 1661 bits (899), Expect = 0.0
Identities = 1040/1108 (94%), Gaps = 10/1108 (1%)
Strand=Plus/Plus
Query 11 ATGGCTACGGCAATGGAAGAGCCAAGGAAGCTGAGAGGCCACAAATCAACTGCCACTTGT 70
||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCAATGGCAATGGAGGAGCCAAGGAAGCTGAGAGGCCACAAATCAACTGCCACTTGT 60
Query 71 TGTATAGCTTCTCGTGACCGGCCTGGAATTGTTCTCACTTCCGGCGAGGATGGTTGCATT 130
||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||
Sbjct 61 TGTATAGCTTCTCGTGACCGGCCTGGACTTGTTCTCACTTCTGGCGAGGATGGTTGCGTT 120
Query 131 TGCTGGTTTGATTTGCGATGTAAAGATGTTCAATTCATCATCGATGTTGGAACAGAACCA 190
|||||||||||||| || ||||||||||||||||||||||| || ||||||||||||||
Sbjct 121 TGCTGGTTTGATTTACGGTGTAAAGATGTTCAATTCATCATTGACGTTGGAACAGAACCG 180
Query 191 GTTTCATCTCTTTGTTTCAAGACAGGTAATGAGAACATTCTCTATGCTTCTTGTGGAAAC 250
||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 181 GTTTCATCTCTTTGTTTCAAGACAGGTTATGAGAACATTCTCTATGCTTCTCATGGAAAC 240
Query 251 GAAATCAAGTCTTTCGATGTTCATACGCTAAGTGCTACTTCTTGGAAGCCATTAGAGAGT 310
||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||
Sbjct 241 GAAATCAAGTCTTTCGATGTTCATACGCTGAGTGCTAATTCATGGAAGCCATTAGAGAGT 300
Query 311 TACAATTACAACAAAGATGAAGTTAACCAGGTAGTATGTAACGGAAGGTCGTCTTTTCTT 370
| | |||||||||||||||||| |||||||||||||| || |||| || |||||||||
Sbjct 301 TTTAGTTACAACAAAGATGAAGTAAACCAGGTAGTATGCAATGGAAAATCATCTTTTCTT 360
Query 371 GCTTCTGCAGATGATTCCGGCGATGTTAAGATCATCGACCTTGGTCAGAAATGCCTTTAT 430
||||||||||||||||| || |||||||||||||||||| ||||||||| ||||||||||
Sbjct 361 GCTTCTGCAGATGATTCTGGTGATGTTAAGATCATCGACATTGGTCAGAGATGCCTTTAT 420
Query 431 AAAACCCTTAGAGCTGGTCACACAAGTATATGTAGTTCTGTACAATTCATTCCATGGAGA 490
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 421 AAAACCCTTAGAGCTGGTCACACAAGTATATGTAGTTCTGTGCAATTCATTCCATGGAGA 480
Query 491 CCTTGGGAAGTTATAACTGGTGGACTTGATTCAAAGCTTGTTTTATGGGATTTCTCAAAA 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CCTTGGGAAGTTATAACTGGTGGACTTGATTCAAAGCTTGTTTTATGGGATTTCTCAAAA 540
Query 551 GGTCGCTCGCAAAAGATTATAGACTTTGGATCTGATACAAATAAT-AACTCGGGACAATG 609
||||||| ||||||||||||||||||||| ||||||||| | || ||||| ||||||||
Sbjct 541 GGTCGCTTGCAAAAGATTATAGACTTTGGGTCTGATACACA-AAGCAACTCAGGACAATG 599
Query 610 CCTAAACCCTGCGTTTGTTCACTCAATAGCAATACCGGAAATGGACATGGTTGATAAGTT 669
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 600 CCTAAACCCTGCGTTTGTTCACTCGATAGCAATCCCGGAAATGGACATGGTTGATAAGTT 659
Query 670 AGACAAGATATGTGCGGTTGCTAGAGGTGATGGAATTGTCAATTTGATCAATATCGAATC 729
|| ||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 660 AGGCAAGATATGCGTGGTTGCTAGAGGTGATGGAATTGTCGATTTGATCAATATCGAATC 719
Query 730 AGAACTTTCCCGAAAAGGAACATCATCAAAAGGAAGTAGCAGCAGCAGCAGCAACAATGT 789
||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||
Sbjct 720 AGAACTTTCCCGAAAAGGAACATCATCAAAAGGAAGTAGCAGCAGCA--A-CAA---TGT 773
Query 790 GGTCAAAAGGGTTTGTTTAGACTACTCTGTTGGTGGACACAATTCTGCTGTTTCTTGTGT 849
| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 774 GATCAAAAGGGTTTGTTTAGACTACTCCGTTGGTGGACACAATGCTGCTGTTTCTTGTGT 833
Query 850 AGCCTTTTCTCTGTTTCAGGAGAAAGGTAGATTCTTAATCTCTGGTGGTAATGATAAAAC 909
||| |||||||||||| ||||||||||||||||||| ||||| |||||||||||||| ||
Sbjct 834 AGCGTTTTCTCTGTTTAAGGAGAAAGGTAGATTCTTGATCTCAGGTGGTAATGATAAGAC 893
Query 910 AGTCAAAATCTGGGATTGCTTTAAATGTCTTGATCCAAACAACAACAACAATAACAGTGA 969
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 894 TGTTAAAATCTGGGATTGCTTTAAATGTCTTGATCCAAACAACAACAACAATAACAGAGA 953
Query 970 TCTCCTCCATTTGAATATTAACCTAAGCAAGAAGGTGAATTGGCTTTGCACGAATCAATC 1029
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 954 TTTCCTCCATTTGAATATTAACTTAAGCAAGAAGGTGAATTGGCTTTGCACGAATCAATC 1013
Query 1030 TGATTCTGAGAATCTTGTAGTGTGTGACACAACAAGAGTAGTTAAGGTTTACTCAATCTC 1089
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1014 TGATTCTGAGAATCTTGTTGTCTGTGACACAACAAGAGTAGTTAAGGTTTACTCAATCTC 1073
Query 1090 TTAAATAGGCC-TGATGGGTCCATAAAA 1116
||||||||||| | ||||| ||||||||
Sbjct 1074 TTAAATAGGCCGT-ATGGGACCATAAAA 1100
Score = 128 bits (69), Expect = 1e-28
Identities = 89/98 (91%), Gaps = 4/98 (4%)
Strand=Plus/Plus
Query 1188 AATGGTTGCTTGATCTACAAGTTAGTTTAtttttttGTTTGATAACCAAATTATAAAGAA 1247
||||||||||||||||||||||||||||| ||| || |||| |||||||||||||||||
Sbjct 1099 AATGGTTGCTTGATCTACAAGTTAGTTTA-TTTGTT-CTTGACAACCAAATTATAAAGAA 1156
Query 1248 TGATT--ACATTTAATTATTGAATTGTTAAATTCTTTT 1283
||||| | |||||||| ||||||||||||||||||||
Sbjct 1157 TGATTTTATATTTAATTTTTGAATTGTTAAATTCTTTT 1194
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47958629586
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5