BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G45770.1
Length=1354
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494406 jgi|Araly1|494406|fgenesh2_kg.8__222__AT5G45770.1 1838 0.0
> Ahg494406 jgi|Araly1|494406|fgenesh2_kg.8__222__AT5G45770.1
Length=1274
Score = 1838 bits (995), Expect = 0.0
Identities = 1199/1294 (93%), Gaps = 28/1294 (2%)
Strand=Plus/Plus
Query 1 ATGAAACCGCAGCAACCACAACCGCCATTGctcctcctcctcctcctccCACTTCTCTTA 60
||||||||||||||||| |||||| |||||||||||||||||||||| | |||||||||
Sbjct 1 ATGAAACCGCAGCAACCGCAACCGTCATTGCTCCTCCTCCTCCTCCT--C-CTTCTCTTA 57
Query 61 ACCACCGTCTCCTCCTATCCACTAAACCCAAAACAGCTCAAAGCTCTCCAATCACTCAAC 120
||||||||||| ||| ||||||| ||||||||||||||||| |||||||||| | |||
Sbjct 58 GCCACCGTCTCCGCCTCTCCACTACACCCAAAACAGCTCAAATCTCTCCAATCTTTAAAC 117
Query 121 ATCTCTACACCAACTAATGATCCCTGCAACAACAACAACAACCAATCCTCCTCCTCGTCC 180
|||||||||||||| ||||||||||| |||||||||||||||||||||| | |||
Sbjct 118 ATCTCTACACCAACCAATGATCCCTG------CAACAACAACCAATCCTCCTCCACCTCC 171
Query 181 ATAACTTGCGACGACGCTTCTCCTTACCGCCACATCACCTCAATCTCCTTCACAAACTGc 240
|||||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 172 ATAACTTGCGACAACGCTTCTCCTTACCGCCACATAACCTCTCTCTCCTTCACAAACTGC 231
Query 241 tcctccactctatctctcccctccaaaacactcaaaccactctcaaaatctctcatctcc 300
||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 232 TCCTCCACTCTATCTCTCCCCTCCAAAACCCTCAAACCACTCTCAAAATCTCTCCTCTCT 291
Query 301 ctctctttc-actaactgcccttcactctctcctccataccacctcccaatctccctcca 359
||||| ||| || |||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 292 CTCTCCTTCAAC-AACTGCCCTTCACTTTCTCCTCCATACCATCTCCCAATCTCCCTCCA 350
Query 360 ctccttctccgccgtctcctccttcctccaAAACAACCGTACCAAACTCTCCGGCCTCTT 419
|||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 351 CTCCTTCTCCGCCGTCTCCTCCTTCCTCCACAACAACCGTACCCGCCTCTCCGGCCTCTT 410
Query 420 CCTCGCTCGTCTCAAAAACCTCAAAACCCTCTACATTTCCTCAACCCCAATC-CAAACCT 478
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 411 CCTCGCTCGTCTCAAAAACCTCAAAACCCTCTACATTTCCTCAACCCCAATCTC-AACCT 469
Query 479 CTCGTCGTCTTTATGTCATCCTCGGAAACATGCATAAACTCACTTCCCTCACTATCTCAA 538
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 470 CTCGTCGTCTTTATGTAATCCTCGGAAACATGCATAAACTCACTTCCCTCACAATCTCAA 529
Query 539 ACTCAAATCTCACTGGCCTTATCCCTAAATCTTTCCACTCAAATCTCAGATACATAGATT 598
||||||||||| | ||| |||| ||||||||||||||||||||||| | |||||| ||||
Sbjct 530 ACTCAAATCTCTCCGGCTTTATTCCTAAATCTTTCCACTCAAATCTTACATACATCGATT 589
Query 599 TATCAAACAACTCACTCAAAGGCTCAATACGCATTTCCATTACTCGTCTCAAAAACCTCA 658
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 590 TATCAAACAATTCACTCAAAGGCTCAATACGCATTTCCATTACTCGTCTCACAAACCTCA 649
Query 659 AGTCCTTAAACTTATCTCATAACTCTCTCTCTGGCCAAATACCAAACAAAATCAAAAGCT 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 650 AGTCCTTAAACTTATCTCATAACTCTCTCTCTGGCCAAATACCAAACAAAATCAAAAGCT 709
Query 719 TAA-CTTTTCTAAAAAACTTATCTTTAGCTTCAAACAAACTATCAGGAACAATCCCAAAT 777
||| |||| |||||||||||||||||||||||||||| | || |||||||||||||||||
Sbjct 710 TAATCTTT-CTAAAAAACTTATCTTTAGCTTCAAACAGATTAACAGGAACAATCCCAAAT 768
Query 778 TCACTCTCATCTATCTCTGAACTTACACATTTGGATCTAAGTATGAATCAACTAAACGGA 837
|||||||| || || |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 769 TCACTCTCGTCAATTTCTGAACTTACACATTTGGATCTAAGCATGAATCAACTAAACGGC 828
Query 838 ACCGTTCCAAGTTTCTTCTCCGAGATGAAGAACCTCAAACACTTGAATCTCGCTGATAAC 897
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 829 ACGGTTCCAAGTTTCTTCTCCGAGATGAAGAATCTCAAACACTTGAATCTCGCTGATAAC 888
Query 898 TCCTTCCATGGAGTTTTACCATTCAACGAAAGCTTCATCAAAAATCTCAACTTTTTCGAA 957
| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 889 TTCTTCCATGGAGTTTTACCATTCAACGAAAGCTTCATTAAAAATCTCAACTTTTTCGAA 948
Query 958 ATTGGAAGGAACAGTGAGCTCTGTTATAACAAAACTGTTCTCTCCTCGAACTTGAAATTG 1017
|||||| ||||||||||||||||||| |||||||||||| | ||||||||||||||||||
Sbjct 949 ATTGGAGGGAACAGTGAGCTCTGTTACAACAAAACTGTTGTATCCTCGAACTTGAAATTG 1008
Query 1018 GAGGGTCTTGCTCCGTGTGATAAATACGGTTTTCCTTTATGGTCTCCGTCGCAAAAGGAG 1077
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1009 GAGGGTCTTGCTCCGTGTGATAAATATGGTTTTCCTTTATGGTCTCCGTCGCAAAAGGAG 1068
Query 1078 GAATCTTTGTCAGGAGAAAACGATTACGACG-TTg-aa-ggaggcaatgaggagaa-gac 1133
|||||||||||||||||||||||||||| || || || || | || ||||| || ||
Sbjct 1069 GAATCTTTGTCAGGAGAAAACGATTACGGCGATTACAACGGTG--AAGGAGGA-AATGA- 1124
Query 1134 ggagaatctgaagacgaaggaag-aagaagaagaagaaCACAAAGGTTCCAACAAGACTC 1192
| ||| | || || |||| ||| ||||||||||||||||||| ||||||||||||||||
Sbjct 1125 GAAGA-T--GACGAAGAAG-AAGGAAGAAGAAGAAGAACACAATGGTTCCAACAAGACTC 1180
Query 1193 TGTTTGGTCTCGGCATTGGTCTTTTCTCGCTTGTGTTCTTAATCCTCTTCCTCTTTTATC 1252
||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 1181 TGTTTGGTCTCGGCATTGGTCTTTTTTCGATTGTGTTCTTAATCCTCTTCCTCTTTTATC 1240
Query 1253 TCGCTAAAAGGTGTCGTTTGATTTGAGAAGTCTG 1286
| |||||||||||||||| |||||||||||||||
Sbjct 1241 TTGCTAAAAGGTGTCGTTGGATTTGAGAAGTCTG 1274
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50665356693
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5