BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G45775.2
Length=841
Score E
Sequences producing significant alignments: (Bits) Value
Ahg948390 jgi|Araly1|948390|scaffold_800277.1 1081 0.0
Ahg946318 jgi|Araly1|946318|scaffold_702547.1 784 0.0
> Ahg948390 jgi|Araly1|948390|scaffold_800277.1
Length=639
Score = 1081 bits (585), Expect = 0.0
Identities = 621/639 (97%), Gaps = 0/639 (0%)
Strand=Plus/Plus
Query 41 TTCGTCTCTTAGCTCGACATTGATCTCCTTAAAATGGCGTCGGAGAAGAAGCTCTCGAAC 100
||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 TTCCTCTCTTAGCTCGACTTTGATCTCCTTAAAATGGCGTCGGAGAAGAAGCTCTCAAAC 60
Query 101 CCCATGAGGGACATTAAGGTTCAGAAACTTGTTCTCAACATTTCCGTTGGTGAGAGTGGT 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CCCATGAGGGACATTAAGGTTCAGAAACTTGTTCTCAACATTTCCGTTGGTGAGAGTGGT 120
Query 161 GATCGTCTCACTCGTGCCTCCAAGGTGTTGGAGCAGCTCAGTGGACAAACCCCTGTCTTC 220
|||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||
Sbjct 121 GATCGTCTCACTCGTGCCTCAAAGGTGTTGGAACAGCTCAGTGGTCAAACCCCTGTCTTC 180
Query 221 TCTAAGGCGAGGTACACTGTGAGGTCTTTTGGTATCAGGCGTAATGAGAAGATTGCGTGT 280
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 181 TCCAAGGCGAGGTACACTGTGAGGTCTTTTGGTATTAGGCGTAATGAGAAGATTGCGTGT 240
Query 281 TATGTGACTGTGAGAGGTGAGAAGGCAATGCAGCTTCTTGAGAGTGGTTTGAAAGTTAAG 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TATGTGACTGTGAGAGGTGAGAAGGCAATGCAGCTTCTTGAGAGTGGTTTGAAAGTTAAG 300
Query 341 GAGTATGAGCTTCTTAGGAGGAACTTCAGTGACACTGGTTGCTTTGGATTTGGTATCCAA 400
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 301 GAGTATGAGCTTCTTAGGAGGAACTTTAGTGACACTGGTTGCTTTGGATTTGGTATCCAA 360
Query 401 GAGCACATTGATCTTGGAATCAAGTACGATCCTTCCACTGGTATCTACGGAATGGACTTT 460
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 361 GAGCACATTGATCTTGGAATCAAGTATGATCCTTCCACTGGTATCTACGGAATGGACTTT 420
Query 461 TACGTTGTCCTTGAACGCCCAGGATATCGTGTGGCTCGCCGCCGTAGATGCAAGACTCGT 520
|||||||||||||||||||||||||| ||||||||||| ||||| ||||||||| |||||
Sbjct 421 TACGTTGTCCTTGAACGCCCAGGATACCGTGTGGCTCGTCGCCGAAGATGCAAGGCTCGT 480
Query 521 GTTGGTATTCAACACAGAGTAACCAAGGATGATGCAATGAAATGGTTCCAGGTCAAGTAT 580
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 481 GTTGGTATTCAGCACAGAGTAACTAAGGATGATGCAATGAAATGGTTCCAGGTCAAGTAT 540
Query 581 GAAGGAGTTATCCTCAACAAGTCTCAGAACATCACTGGTTAAAAAGTGTTTTGATCTTTA 640
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 541 GAAGGAGTTATTCTCAACAAGTCTCAGAACATCACTGGTTAAAAAGTCTTTTGATCTTTA 600
Query 641 AAGATTTTTGTTGATTCTAGCTTATTTTAAGTTGTTATC 679
|||||||||||||||||||||||||||||||||||||||
Sbjct 601 AAGATTTTTGTTGATTCTAGCTTATTTTAAGTTGTTATC 639
> Ahg946318 jgi|Araly1|946318|scaffold_702547.1
Length=608
Score = 784 bits (424), Expect = 0.0
Identities = 516/561 (92%), Gaps = 4/561 (1%)
Strand=Plus/Plus
Query 74 ATGGCGTCGGAGAAGAAGCTCTCGAACCCCATGAGGGACATTAAGGTTCAGAAACTTGTT 133
||||||||||||||||||||||||||||| |||||||| |||||||||||||| || |||
Sbjct 40 ATGGCGTCGGAGAAGAAGCTCTCGAACCCTATGAGGGATATTAAGGTTCAGAAGCTAGTT 99
Query 134 CTCAACATTTCCGTTGGTGAGAGTGGTGATCGTCTCACTCGTGCCTCCAAGGTGTTGGAG 193
|| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 100 CTTAACATCTCTGTTGGTGAGAGTGGTGATCGTCTCACTCGTGCCTCCAAGGTGTTGGAA 159
Query 194 CAGCTCAGTGGACAAACCCCTGTCTTCTCTAAGGCGAGGTACACTGTGAGGTCTTTTGGT 253
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 160 CAGCTCAGTGGTCAAACCCCTGTCTTCTCTAAGGCGAGGTACACTGTGAGGTCTTTTGGT 219
Query 254 ATCAGGCGTAATGAGAAGATTGCGTGTTATGTGACTGTGAGAGGTGAGAAGGCAATGCAG 313
|||||||||||||| ||||||||||| ||||| || ||||||||||||||||||||||||
Sbjct 220 ATCAGGCGTAATGAAAAGATTGCGTGCTATGTCACCGTGAGAGGTGAGAAGGCAATGCAG 279
Query 314 CTTCTTGAGAGTGGTTTGAAAGTTAAGGAGTATGAGCTTCTT-AGGAGGAACTTCAGTGA 372
|||||||||||||| |||||||| ||||| || ||||| || |||||||||||||||||
Sbjct 280 CTTCTTGAGAGTGGCTTGAAAGTGAAGGAATACGAGCTG-TTGAGGAGGAACTTCAGTGA 338
Query 373 CACTGGTTGCTTTGGATTTGGTATCCAAGAGCACATTGATCTTGGAATCAAGTACGATCC 432
|||||| ||||||||||| |||||||| |||||||||||||||||||||||||| |||||
Sbjct 339 CACTGGCTGCTTTGGATTCGGTATCCAGGAGCACATTGATCTTGGAATCAAGTATGATCC 398
Query 433 TTCCACTGGTATCTACGGAATGGACTTT-TACGTTGTCCTTGAACGCCCAGGATATCGTG 491
||| || ||||||||||| ||||| ||| |||||||| ||||||||||| ||||| ||||
Sbjct 399 TTCTACCGGTATCTACGGTATGGA-TTTCTACGTTGTTCTTGAACGCCCGGGATACCGTG 457
Query 492 TGGCTCGCCGCCGTAGATGCAAGACTCGTGTTGGTATTCAACACAGAGTAACCAAGGATG 551
| || || ||||||||||||||| ||||||||||||||||||| ||||| ||||||||||
Sbjct 458 TTGCCCGTCGCCGTAGATGCAAGGCTCGTGTTGGTATTCAACATAGAGTTACCAAGGATG 517
Query 552 ATGCAATGAAATGGTTCCAGGTCAAGTATGAAGGAGTTATCCTCAACAAGTCTCAGAACA 611
|||| ||||| |||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 518 ATGCCATGAAGTGGTTCCAAGTTAAGTATGAAGGAGTTATCCTCAACAAGTCTCAGAACA 577
Query 612 TCACTGGTTAAAAAGTGTTTT 632
||||||||| || ||| ||||
Sbjct 578 TCACTGGTTGAAGAGTTTTTT 598
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31108300272
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5