BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G45780.1
Length=1979
Score E
Sequences producing significant alignments: (Bits) Value
Ahg330836 jgi|Araly1|330836|fgenesh1_pm.C_scaffold_8000179 2894 0.0
> Ahg330836 jgi|Araly1|330836|fgenesh1_pm.C_scaffold_8000179
Length=1842
Score = 2894 bits (1567), Expect = 0.0
Identities = 1754/1846 (95%), Gaps = 5/1846 (0%)
Strand=Plus/Plus
Query 1 ATGGAGATTTCTTTGATGAAGTTTCTGTTTTTAGGAATCTGGGTTTATTATTACTCTGTT 60
|||||||||| |||||| |||||||| |||||||||||||||| | |||||||||||||
Sbjct 1 ATGGAGATTTTTTTGATAAAGTTTCTTTTTTTAGGAATCTGGG--T-TTATTACTCTGTT 57
Query 61 CTTGACTCTGTTTCTGCCATGGATAGTCTTTTATCTCCCAAGGGTGTTAACTATGAAGTG 120
||||| ||||||| ||| ||||||||||| |||||||| |||||||||||||||||||||
Sbjct 58 CTTGATTCTGTTTTTGCAATGGATAGTCTCTTATCTCCAAAGGGTGTTAACTATGAAGTG 117
Query 121 GCTGCGTTAATGTCAGTGAAGAACAAGATGAAAGATGAGAAAGAGGTTTTGTCTGGTTGG 180
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 118 GCTGCTTTAATGTCAGTGAAGAATAAGATGAAAGATGAGAAAGAGGTTTTGTCTGGTTGG 177
Query 181 GATATTAACTCTGTTGATCCTTGTACTTGGAACATGGTTGGTTGTTCTTCTGAAGGTTTT 240
||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 178 GATATAAACTCTGTTGATCCTTGTACTTGGAACATGGTTGGTTGTTCCTCTCAAGGTTTT 237
Query 241 GTGGTTTCTCTAGAGATGGCTAGTAAAGGATTATCAGGGATACTATCTACTAGTATTGGG 300
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 238 GTGGTTTCTCTAGAGATGGCTAGTAAAGGATTATCAGGGATAATATCTACTAGTATTGGG 297
Query 301 GAATTAACTCATCTTCATACTTTGTTACTTCAGAATAATCAGTTAACTGGTCCGATTCCT 360
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 298 GAATTAACTCATCTTCATACTTTGTTACTTCAGAATAATCAGTTAACCGGTCCGATTCCT 357
Query 361 TCTGAGTTAGGCCAACTCTCTGAGCTTGAAACGCTTGATTTATCGGGGAATCGGTTTAGT 420
||||||||||||||||| |||||||||||||| |||||| |||| ||||| |||||||||
Sbjct 358 TCTGAGTTAGGCCAACTTTCTGAGCTTGAAACTCTTGATCTATCTGGGAACCGGTTTAGT 417
Query 421 GGTGAAATCCCAGCTTCTTTAGGGTTCTTAACTCACTTAAACTACTTGCGGCTTAGCAGG 480
|| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 418 GGAGAAATCCCAGCTTCTTTAGGGTTCTTGACTCACTTAAACTACTTGCGGCTAAGCAGG 477
Query 481 AATCTTTTATCTGGGCA-AGTCCCTCACCTCGTCGCTGGCCTCTCAGGTCTTTCTTTCTT 539
||||||||||| ||||| | |||| ||||| |||||||||||||||||||||||||||||
Sbjct 478 AATCTTTTATCCGGGCAGATTCCC-CACCTTGTCGCTGGCCTCTCAGGTCTTTCTTTCTT 536
Query 540 GGATCTATCTTTCAACAATCTAAGCGGACCAACTCCGAATATATCAGCAAAAGATTACAG 599
|||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||
Sbjct 537 GGATCTATCTTTCAACAATCTAAGCGGACCAACTCCAAATATATTAGCAAAAGACTACAG 596
Query 600 GATTGTAGGAAATGCATTTCTTTGTGGTCCAGCTTCCCAAGAGCTTTGCTCAGATGCTAC 659
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 597 GATTGTAGGAAATGCATTCCTTTGTGGTCCAGCTTCCCAAGAGCTTTGCTCAGATGCTGC 656
Query 660 ACCTGTGAGAAATGCGACGGGTTTGTCTGAAAAGGACAATAGCAAACATCACAGCTTAGT 719
|||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||
Sbjct 657 ACCTGTGAGAAATGCGACAGGCTTGTCTGAGAAGGACAATAGCAAACATCACAGCTTAGT 716
Query 720 GCTCTCTTTTGCATTTGGCATTGTTGTTGCCTTTATCATCTCCCTAATGTTTCTCTTCTT 779
||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||||
Sbjct 717 GCTCTCTTTTGCATTTGGCATTGTTGTTGCCTTTATCTTCTCTTTAATCTTTCTCTTCTT 776
Query 780 CTGGGTGCTTTGGCATCGATCACGTCTCTCAAGATCACACGTGCAGCAAGACTACGAATT 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 CTGGGTGCTTTGGCATCGATCACGTCTCTCAAGATCACACGTGCAGCAAGACTACGAATT 836
Query 840 TGAAATCGGCCATCTGAAAAGGTTCAGTTTTCGCGAAATACAAACCGCAACAAGCAATTT 899
||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 837 TGAAATCGGGCATCTGAAAAGGTTCAGTTTTCGCGAAATACAAACTGCAACGAGCAATTT 896
Query 900 TAGTCCAAAGAACATTTTGGGACAAGGAGGGTTTGGGATGGTTTATAAAGGGTATCTCCC 959
|||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 897 TAGTCCGAAGAACATTTTGGGACAAGGAGGATTCGGGATGGTTTATAAAGGGTATCTCCC 956
Query 960 AAATGGAACTGTGGTGGCAGTTAAAAGATTGAAAGATCCGATTTATACAGGAGAAGTTCA 1019
|||||||||||||||||| |||||||||||||||||||||| |||||| |||||||||||
Sbjct 957 AAATGGAACTGTGGTGGCGGTTAAAAGATTGAAAGATCCGAATTATACTGGAGAAGTTCA 1016
Query 1020 GTTTCAAACCGAAGTAGAGATGATTGGCTTAGCTGTTCACCGTAACCTTTTACGCCTCTT 1079
||||||||||||||| || |||||||||||||| ||||| ||||| |||||||| |||||
Sbjct 1017 GTTTCAAACCGAAGTCGAAATGATTGGCTTAGCAGTTCATCGTAATCTTTTACGTCTCTT 1076
Query 1080 TGGATTCTGTATGACCCCGGAAGAGAGAATGCTTGTGTATCCGTACATGCCAAATGGAAG 1139
||||||||||||||| || |||||||||||||| |||||||| || ||||||||||||||
Sbjct 1077 TGGATTCTGTATGACACCAGAAGAGAGAATGCTCGTGTATCCTTATATGCCAAATGGAAG 1136
Query 1140 CGTAGCTGATCGTCTGAGAGACAATTATGGAGAAAAGCCGTCTCTAGATTGGAATCGGAG 1199
||| |||||||| |||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 1137 CGTGGCTGATCGCCTGAGAGACAATTATGGAGAAAAGCCGTCTTTAGACTGGAATCGGAG 1196
Query 1200 GATAAGCATTGCACTCGGCGCAGCTCGAGGACTTGTTTACTTGCACGAGCAATGCAATCC 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 GATAAGCATTGCACTCGGCGCAGCTCGAGGACTTGTTTACTTGCACGAGCAATGCAATCC 1256
Query 1260 AAAGATTATTCACAGAGACGTCAAAGCTGCAAATATTCTACTTGATGAGAGCTTTGAAGC 1319
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1257 AAAGATTATTCACAGAGACGTCAAAGCTGCAAATATTCTACTTGATGAGAGTTTTGAAGC 1316
Query 1320 AATAGTTGGCGATTTTGGTCTAGCAAAGCTTTTAGACCAGAGAGATTCACATGTCACTAC 1379
||| ||||| ||||||||||| |||||||| |||||||||||||||||||||||||| ||
Sbjct 1317 AATTGTTGGAGATTTTGGTCTCGCAAAGCTATTAGACCAGAGAGATTCACATGTCACAAC 1376
Query 1380 CGCAGTCCGAGGAACCATTGGACACATCGCTCCCGAGTACCTTTCCACTGGACAGTCCTC 1439
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1377 CGCGGTCCGAGGAACCATTGGACACATCGCTCCTGAGTACCTTTCCACTGGACAGTCCTC 1436
Query 1440 AGAGAAAACCGATGTTTTCGGATTCGGAGTACTAATCCTTGAACTCATAACAGGTCATAA 1499
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1437 AGAGAAAACTGATGTTTTCGGATTCGGAGTACTAATTCTTGAACTCATAACAGGTCATAA 1496
Query 1500 GATGATTGATCAAGGCAATGGTCAAGTTCGAAAAGGAATGATATTGAGCTGGGTAAGGAC 1559
| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1497 GGTGATTGATCAAGGCAATGGTCAAGTTCGAAAAGGAATGATTTTGAGCTGGGTAAGGAC 1556
Query 1560 ATTGAAAGCAGAGAAGAGATTTGCAGAGATGGTGGACAGAGATTTGAAGGGAGAGTTTGA 1619
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1557 ATTGAAAGCAGAGAAGAGATTTGCAGAGATGGTGGACAGAGATTTGAAAGGAGAGTTTGA 1616
Query 1620 TGATTTGGTGTTGGAGGAAGTAGTGGAATTGGCTTTGCTTTGTACACAGCCACATCCGAA 1679
||||||||| ||||||||||| |||||||||||| ||||||||||||| |||||||||||
Sbjct 1617 TGATTTGGTTTTGGAGGAAGTTGTGGAATTGGCTCTGCTTTGTACACAACCACATCCGAA 1676
Query 1680 TCTAAGACCGAGGATGTCTCAAGTGTTGAAGGTACTAGAAGGTTTAGTGGAACAGTGTGA 1739
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1677 TCTAAGACCGAGGATGTCTCAGGTCTTGAAGGTACTAGAAGGTTTAGTGGAACAGTGTGA 1736
Query 1740 AGGAGGGTATGAAGCTAGAGCTCCAAGTGTCTCTAGGAACTACAGTAATGGTCATGAAGA 1799
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1737 AGGAGGGTATGAAGCTAGAGCTCCAAGTGTCTCTAGGAATTATAGTAATGGTCATGAAGA 1796
Query 1800 GCAGTCCTTTATTATTGAAGCCATTGAGCTCTCTGGACCACGATGA 1845
||| || |||||| ||||||| ||||||||||||||||||||||||
Sbjct 1797 GCATTCGTTTATTGTTGAAGCTATTGAGCTCTCTGGACCACGATGA 1842
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74390248485
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5