BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G45790.2
Length=1364
Score E
Sequences producing significant alignments: (Bits) Value
Ahg948388 jgi|Araly1|948388|scaffold_800275.1 1450 0.0
> Ahg948388 jgi|Araly1|948388|scaffold_800275.1
Length=1180
Score = 1450 bits (785), Expect = 0.0
Identities = 934/1005 (93%), Gaps = 14/1005 (1%)
Strand=Plus/Plus
Query 370 CTAGATGGAAGAATCTCGTTGGTTTGAATGTAAATG-TTGGAGCTTTTATCGGTAAGTAT 428
|||||||||||||||||||||||||||||||||| | ||||||||||| | ||||||||
Sbjct 160 CTAGATGGAAGAATCTCGTTGGTTTGAATGTAAA-GTTTGGAGCTTTTGTAAGTAAGTAT 218
Query 429 CCTCATGCTTTTGAGATCTTTACACATCCTTTTAGTAAGAATCTTTGTTGTAAGATTACT 488
||||||||||||||||||||||||||||||| ||| |||||| | |||||||||||||||
Sbjct 219 CCTCATGCTTTTGAGATCTTTACACATCCTTGTAGGAAGAATATGTGTTGTAAGATTACT 278
Query 489 GAGAAGTTTAAGGTATTGATTGATGAGGAAGAGAATGTTGTTAGAGAGTGTGAGGTTGAT 548
|||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 279 GAGAAGTTTAAGGTTTTGATTGATGAGGAAGAGAGTGTTGTTAGAGAGTGTGAGGTTGAT 338
Query 549 GCTGTGAAGAGGGTAAAGAAGTTGTTGTTGTTGTCG-AAACACGGTGTTCTTCGTGTACA 607
|||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||| ||
Sbjct 339 GCTGTGAAGAGGGTAAAGAAGTTGTTGTTGATGTCGAAAAC-CGGTGTTCTTCGTGTTCA 397
Query 608 TGCTTTGAGGTTGATTAGAAAGGAATTGGGTTTGCCTGAGGATTTTCGAGATTCTATTTT 667
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 398 TGCTTTGAGGTTGATTAGAAAGGAATTGGGTTTGCCTGAGGATTTTCGAGATTCGATTTT 457
Query 668 AGCTAAGTATAGTTCAGAGTTCAGGTTAGTTGATTTGGAGACTTTAGAGTTAGTTGAT-- 725
||||||||||||||||| |||||||| |||||||| |||||||| || |||||||||
Sbjct 458 GGCTAAGTATAGTTCAGATTTCAGGTTGGTTGATTTAGAGACTTTGGAATTAGTTGATGG 517
Query 726 A-GAGAT--G-ATGAGAGTTTGTGTGTGGCAAAAGTTGAGGAGTGGAGAGAAGTTGAATA 781
| | | | | ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 518 AGGTGGTGAGAATGAGAGATTGTGTGTGGCAAAAGTTGAGGAGTGGAGAGAAGTTGAATA 577
Query 782 TAGAGAGAAATGGTTAAGTAAGTTTGAGACGAATTACGCGTTTCCTATTCATCTTCCTAC 841
||||||||||||||| ||| ||||||||||||||||||| ||||| ||||||||||||||
Sbjct 578 TAGAGAGAAATGGTTGAGTGAGTTTGAGACGAATTACGCTTTTCCGATTCATCTTCCTAC 637
Query 842 AGGGTTCAAGATTGAGAAAGGGTTTAGAGAAGAGTTAAAGAATTGGCAAAGGGTTCCTTA 901
||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 638 AGGATTCAAGATTGAGAAAGGATTCAGAGAAGAGTTAAAGAATTGGCAAAGGGTTCCTTA 697
Query 902 TGTGAAGCCTTATGATAGAAAGGAGATTTCTCGAGGGTTAGAGCGATTCGAGAAGCGTGT 961
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 698 TGTGAAGCCTTATGATAGAAAGGAGATTTCTCGAGGGTTAGAGAGATTCGAGAAGCGAGT 757
Query 962 TGTTGCAGTTATCCATGAGCTTCTGAGCTTAACGGTAGAGAAAATGGTTGAAGTTGAGAG 1021
||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 758 GGTTGCAGTTATTCATGAGCTTCTGAGCTTAACGGTAGAGAAAATGGTTGAAGTCGAGAG 817
Query 1022 ATTAGCTCATTTTCGAAAGGATCTTGGTATTGAAGTAAACGTGAGGGAAGTTATATTGAA 1081
|||||||||||| |||||||||||||| ||||||||||| || |||||||| ||||||||
Sbjct 818 ATTAGCTCATTTCCGAAAGGATCTTGGCATTGAAGTAAATGTCAGGGAAGTAATATTGAA 877
Query 1082 ACATCCCGGGATTTTCTATGTGTCGACGAAAGGAAGTA-GTCAGACTTTGTTTCTAAGAG 1140
||||||||||||||||||||| |||||||||||||||| | ||||| |||||||| ||||
Sbjct 878 ACATCCCGGGATTTTCTATGTATCGACGAAAGGAAGTACG-CAGACATTGTTTCTTAGAG 936
Query 1141 AAGCTTATAGCAAAGGGTGTTTGATTGAGCCGAACCCGATATACAATGTGAGGAGGAAAA 1200
|||||||||||||||| |||||||||||||| || ||||||||||||||| |||||||||
Sbjct 937 AAGCTTATAGCAAAGGCTGTTTGATTGAGCCAAATCCGATATACAATGTGCGGAGGAAAA 996
Query 1201 TGCTTGATCTTGTGTTGTTGAAAACGCGTTATTCGAGAATGTTGTTACAAAGGGAAGATG 1260
|||| ||||||||||||||||||||||| || |||||| ||| ||||||| ||||||||
Sbjct 997 TGCTGGATCTTGTGTTGTTGAAAACGCGACATACGAGAAAGTTATTACAAACGGAAGATG 1056
Query 1261 AAACTCATAGA-GAAGAGAAGAGTAGAGATGTTTTGATTAGCTCTAATGAAGATTGGGAA 1319
|||||||| || ||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 1057 AAACTCAT-GAAGAAGAGAAGAGTAGAGATGTTTTGACTAGCTCTCATGAAGATTGGGAA 1115
Query 1320 GGAGGGAGAGATGGAGATTGGGTCTTACCAATTTTGGGGAAATGA 1364
|||| |||||||||||||||||||||||| ||| |||||||||||
Sbjct 1116 GGAGAGAGAGATGGAGATTGGGTCTTACCTATTCTGGGGAAATGA 1160
Score = 255 bits (138), Expect = 5e-67
Identities = 153/160 (96%), Gaps = 1/160 (1%)
Strand=Plus/Plus
Query 73 AAATTCACAGTAAAAAAGATATGAATTCTCTAAAATCTTTGAGATACAGTAGCATTAGAG 132
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2 AAATTCACAGT-AAAAAGATATGAATTCTCTAAAATCTTTGAGATACAGTAGCATTAGAG 60
Query 133 AAGCTTTGACACATCAAAACCCAACAAAGTCTTCATTTTTATGCCCACTTTACTTCTACA 192
||| ||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 61 AAGTTTTAACACATCAAAACCCAACAAAGTCTCCATTTTTATGTCCACTTTACTTCTACA 120
Query 193 ATCAACGAAGATGGTTAAAGCCTGTAGATTCAGCACAAAC 232
||||| |||||||||||||||||||||||||||||||||
Sbjct 121 ATCAAAAAAGATGGTTAAAGCCTGTAGATTCAGCACAAAC 160
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51046585863
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5