BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G45800.1
Length=2365
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494402 jgi|Araly1|494402|fgenesh2_kg.8__218__AT5G45800.1 3134 0.0
> Ahg494402 jgi|Araly1|494402|fgenesh2_kg.8__218__AT5G45800.1
Length=2175
Score = 3134 bits (1697), Expect = 0.0
Identities = 2044/2207 (93%), Gaps = 41/2207 (2%)
Strand=Plus/Plus
Query 1 CTTTTCTGATAAACCTCACCAGCTCCTCTCAAATTCTGCAACAACTAAA-CC-ctctctc 58
||| |||||||||||||||||||||||||||||| ||||||| |||||| || |||||||
Sbjct 1 CTTCTCTGATAAACCTCACCAGCTCCTCTCAAATACTGCAACTACTAAACCCTCTCTCTC 60
Query 59 tctctctctctatc-tt-tctctctTCACCATTTCTTTATCTTCCATGGAAGAACAGTCT 116
||||||||||| || || ||||||||||||||||||||||||||||||||| |||| ||
Sbjct 61 TCTCTCTCTCTCTCTTTCTCTCTCTTCACCATTTCTTTATCTTCCATGGAAAAACAATCA 120
Query 117 TCAACAACAAACTAAAAACATGTTTCTAAAGTTGTTTCTTCTCTTATCTTTGGTCTCCTT 176
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 121 TCAACAACAAACTAAAAACATGTTTCTAAAGTTGTTTCTTCTCTTGTCTTTGGTCTCCTT 180
Query 177 CTCACACTCAGACTCTTCTTCCACAGTTTCTTGTCCTAACGGCACAGACTTCCATCAACT 236
|||||||||||| | ||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 181 CTCACACTCAGA--C-TCTTCCACAGTTTCTTGTCCTAACGGCACAGACTTCCGTCAATT 237
Query 237 AACCACAGTTTTTCGTTACGTCTCCGGTTTCAACTCTTCCTGGTTCTCCTCAAACTGCTC 296
||||| |||||| |||||||||||||| ||||||||||| ||||||||||| ||||||||
Sbjct 238 AACCAGAGTTTTCCGTTACGTCTCCGGCTTCAACTCTTCTTGGTTCTCCTCTAACTGCTC 297
Query 297 CGCCGTTATCACTCACGTCGTTCTTCCGTCAAGAAAAC-TAAACGGCACCGTTTCTTGGA 355
|||||| ||||||||||||||||||||||| || |||| |||||||||||||||||||||
Sbjct 298 CGCCGTCATCACTCACGTCGTTCTTCCGTCGAG-AAACTTAAACGGCACCGTTTCTTGGA 356
Query 356 ACCCTATACGTAATCTCACGCGCTTACGTGTTCTTGATCTCTCCAACAACTCTCTCGATG 415
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 ACCCTTTACGTAATCTCACGCGCTTACGTGTTCTTGATCTCTCCAACAACTCTCTCGATG 416
Query 416 GTTCTCTTCCCACTTGGCTCTGGTCTATGCCAGGTCTTGTCTCCGTTAATCTCTCTCGGA 475
||||||||||||||||||||||||||| || ||||||||||| ||||||||||| ||||
Sbjct 417 GTTCTCTTCCCACTTGGCTCTGGTCTAAACCCGGTCTTGTCTCTGTTAATCTCTCCCGGA 476
Query 476 ACCGGTTTGGTGGCTCTATACGAGTGATTCCAG-TTAATGGTTCGGTTTTGTCTGCGGTT 534
| ||||||||||||||||||||||||||||| | |||| |||||||||||||| |||||
Sbjct 477 ATCGGTTTGGTGGCTCTATACGAGTGATTCC-GTTTAACAGTTCGGTTTTGTCTTCGGTT 535
Query 535 AAGGAGTTGAATCTCTCGTTCAATCGGTTTAAAC-ACGCGGTTAACTTTACCGGATTTAC 593
|||||||||||||||||||||||||||||| | | ||||||| ||| | ||||| |||||
Sbjct 536 AAGGAGTTGAATCTCTCGTTCAATCGGTTT-ACCAACGCGGTAAACCTAACCGGGTTTAC 594
Query 594 CAACCTCACAACTCTCGATCTTTCGCACAACAGTCTCGGTGTTTTGCCTCTTGGTTTGGG 653
||||||||| |||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 595 TAACCTCACATCTCTCGATCTTTCGCATAACAATCTCGGTGTTTTGCCTCTTGGTTTGGG 654
Query 654 TTCTCTATCGGGTTTACGCCACCTTGATATATCCAGATGTAAAATCAATGGTAGTGTTAA 713
|| ||| || |||||||||||||||||| | |||||||||||||||||||| ||| ||||
Sbjct 655 TTTTCTCTCCGGTTTACGCCACCTTGATCTCTCCAGATGTAAAATCAATGGCAGTATTAA 714
Query 714 ACCGATTTCCGGTTTAAAGTCGTTGGATTACTTGGATTTATCGGAGAACTCAATGAACGG 773
||| ||||||||||||||||| ||| | ||||||||| | ||||||||||||||||||||
Sbjct 715 ACCAATTTCCGGTTTAAAGTCATTGAACTACTTGGATATGTCGGAGAACTCAATGAACGG 774
Query 774 TTCGTTCCCGGTTGACTTTCCGAATCTCAACCATCTCCAATTCTTGAATTTATCTGCAAA 833
||||||||||||||| ||||||||| | ||||||||||| ||||||||||||||||||||
Sbjct 775 TTCGTTCCCGGTTGATTTTCCGAATTTAAACCATCTCCAGTTCTTGAATTTATCTGCAAA 834
Query 834 CCGGTTTTCCGGTTCGGTTGGATTTGACAAATACCGAAAATTCGGTAAATCAGCATTCTT 893
|||||||||||||||||| |||||||||||||||||||||||||| ||||| || |||||
Sbjct 835 CCGGTTTTCCGGTTCGGTCGGATTTGACAAATACCGAAAATTCGGAAAATCGGCCTTCTT 894
Query 894 ACACGGCGGCGATTTCGTCTTCAACGATTCCAAAATCCCTTATCACCACCGTATCCACCG 953
|||||| |||||||||||||||||||||||||||||||| | | ||| | ||||||
Sbjct 895 ACACGGTGGCGATTTCGTCTTCAACGATTCCAAAATCCC---T-A--ACC--A-CCACCG 945
Query 954 TCTACCACACCGGCATCCGCCACCAGTGCGTCAACGAAACGTTAAAACGCACCGTACAAA 1013
||| | || | ||| | ||||||| |||| ||| |||||||| ||| |||
Sbjct 946 TCT--C-CA-C--CAT-------C--TGCGTCATCGAACCGTCAAAACGCATCGTTTAAA 990
Query 1014 TCACACTCCTTTGGTGATTGGCCTATCGTCTTCGTTAGGAGCTTTGATAATCGTAATCTT 1073
| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
Sbjct 991 ACGCACTCCTTTGGTGATTGGTTTATCGTCTTCGTTAGGAGCTTTGATAATCCTAATCCT 1050
Query 1074 CGCTGCGGCTATAATTTTAATCCGCCGGAGAATGAAATCGGCGAGAACGAAATCGAGATG 1133
||| | ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 1051 CGCGGTGGCTATAATTTTAATCCGCCGGAAAATGAAATCGGCGAGGACGAAATCGAGATG 1110
Query 1134 GGCGATTTCGAATCCTACACCGTTAGATTTCAAAATGGAGAAATCTGGACCGTTCGAATT 1193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 GGCGATTTCGAATCCTACACCGTTAGATTTCAAAATGGAGAAATCTGGACCGTTCGAATT 1170
Query 1194 CGGAACGGAGTCTGGTTCTTCATGGGTCGCCGATATAAAAGAGCCAACGGCGGCTCCGGT 1253
|||||||||||| ||||| || |||||||||||||||||||| |||||||||||||||||
Sbjct 1171 CGGAACGGAGTCAGGTTCGTCGTGGGTCGCCGATATAAAAGAACCAACGGCGGCTCCGGT 1230
Query 1254 TGTGATGGCATCTAAGCCGTTGATGAATCTGACTTTCAAGGATCTGATTGTTGCCACGTC 1313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1231 TGTGATGGCATCTAAGCCGTTGATGAATCTGACTTTCAAGGATCTGATTGTTGCCACGTC 1290
Query 1314 ACATTTCGGAACGGAGTCCGTTATTTCTGACGGCACTTGTGGTCCACTTTACCGTGCCGT 1373
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1291 ACATTTCGGAACGGAGTCTGTTATATCTGACGGCACTTGTGGTCCACTTTACCGTGCCGT 1350
Query 1374 TTTACCAGGAGATCTCCACGTGGCAATTAAAGTGCTTGAGAGAATCAGAGACGTTGATCA 1433
|||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1351 TTTACCCGGAGATCTCCACGTGGCAATCAAAGTTCTTGAGAGAATCAGAGACGTTGATCA 1410
Query 1434 AAACGACGCCGTTACTGCGTTCGAAGCTTTAACTCGGCTTAAACATCCAAATCTTTTGAC 1493
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1411 AAACGACGCCGTTACTGCGTTTGAAGCTTTAACTCGGCTTAAACATCCAAATCTTTTGAG 1470
Query 1494 TCTCTCCGGTTATTGCATCGCAGGAAAAGAGAAGCTTATATTATATGAATTTATGGCTAA 1553
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1471 TCTCTCCGGTTATTGCATCGCAGGAAAAGAGAAGCTTATATTATATGAGTTTATGGCTAA 1530
Query 1554 CGGAGATCTTCACCGATGGCTACACGAGCTCCCGGCGGGAGAAACCAACGTGGAAGATTG 1613
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1531 TGGAGATCTTCACCGATGGCTTCACGAGCTCCCGGCAGGAGAAACCAACGTGGAAGATTG 1590
Query 1614 GAGTGCCGATACATGGGAGAGTCACGTCGGAGACTCATCACCGGAGAAAACAAATTGGCT 1673
|||||||||||||||||| |||||||||||||||||||| || ||||||||||| |||||
Sbjct 1591 GAGTGCCGATACATGGGAAAGTCACGTCGGAGACTCATCGCCTGAGAAAACAAACTGGCT 1650
Query 1674 AATACGTCACCGTATCGCCATAGGAGTTGCACGTGGTTTAGCCTATCTACACCACGTTGG 1733
||||||||||||||| ||||| |||||||||||||||||||||||||| || ||||||||
Sbjct 1651 AATACGTCACCGTATAGCCATTGGAGTTGCACGTGGTTTAGCCTATCTTCATCACGTTGG 1710
Query 1734 TACTACTCATGGACACTTAGTCGCTACCAACATCCTCCTAACCGAAACCCTAGAGCCGCG 1793
||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1711 TACTACTCACGGACATTTGGTCGCTACCAACATCCTCCTAACCGAAACCCTAGAGCCGCG 1770
Query 1794 TATCTCTGATTTCGGTATCAACAACATTGCGAGAACCGGAGATGATACTAATAAAAACAA 1853
||||||||||| ||||| |||||||| |||| ||||||||||||||||||||| |||||
Sbjct 1771 AATCTCTGATTTTGGTATAAACAACATCGCGAAAACCGGAGATGATACTAATAACAACAA 1830
Query 1854 TGTAGAATTCGATGTGTATAGTTTCGGGGTGATTTTGTTTGAGTTATTAACCGGGAAGCA 1913
|||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||
Sbjct 1831 TGTAGAATTCGATGTGTATAGTTTCGGGGTGATTTTATTTGAGCTATTAACGGGGAAGCA 1890
Query 1914 AGGGAGTGATGAGAATGTTAAATCCGTTCGCCGGTTGGTTAAGGAGAGAAGAGGAGAGGA 1973
|||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1891 AGGGAGGGATGAGAATGTTAAATCGGTTCGACGGTTGGTTAAGGAGAGAAGAGGAGAGGA 1950
Query 1974 AGCTCTTGACTCGAGATTGCGGTTAGCTGCTGGAGAATCGGTTAATGAGATGGTAGAGAG 2033
||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||
Sbjct 1951 AGCTCTTGACTCGAGATTGCGGTTAGCGGTTGGAGAATCGGTTAATGAGATGGTCGAGAG 2010
Query 2034 TCTTCGAATTGGTTACTTTTGCACGGCGGAGACGCCAGTGAAG-CGACCAACAATGCAAC 2092
|||||| |||||||| |||||||| ||||||||||| | ||| ||||||||||||||||
Sbjct 2011 TCTTCGGATTGGTTATTTTTGCACCGCGGAGACGCCGG-GAAAACGACCAACAATGCAAC 2069
Query 2093 AGGTCTTGGGTCTTCTTAAAGACATACGTACGGTTTCACGTTGAGTTAGGAA-AAAGAAA 2151
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2070 AAGTCTTGGGTCTTCTTAAAGACATACGTACGGTTTCACGTTGAGTTAGGAAGAAAGAAA 2129
Query 2152 GTTGGGTTTAAGATAAATCATGTGAGTATTAGATTCGGGTGTTGTTG 2198
|||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 2130 GTTGGGTTTA-GATAAATCATGTGAGTATTAGATTCCGGTGTTGTTG 2175
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89093083055
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5