BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G45820.1
Length=1564
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494400 jgi|Araly1|494400|fgenesh2_kg.8__216__AT5G45820.1 2287 0.0
Ahg481948 jgi|Araly1|481948|fgenesh2_kg.4__1008__AT2G30360.1 122 6e-27
> Ahg494400 jgi|Araly1|494400|fgenesh2_kg.8__216__AT5G45820.1
Length=1421
Score = 2287 bits (1238), Expect = 0.0
Identities = 1364/1425 (96%), Gaps = 8/1425 (1%)
Strand=Plus/Plus
Query 143 AATGGATAAAAACGGCATAGTTTTGATGCGAAAATATGAATTAGGTCGTCTTCTAGGTCA 202
|||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1 AATGGATAAAAACGGCATCGTTTTGATGCGAAAATACGAATTAGGTCGACTTCTAGGTCA 60
Query 203 AGGCACATTCGCAAAAGTGTACCACGCACGCAACATAAAAACAGGAGAAAGCGTAGCGAT 262
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AGGCACTTTTGCAAAAGTGTACCACGCACGCAACATAAAAACAGGAGAAAGCGTAGCGAT 120
Query 263 CAAGGTGATCGACAAACAGAAAGTTGCGAAAGTCGGATTAATCGATCAAATCAAACGAGA 322
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 121 CAAGGTGATCGACAAACAGAAAGTCGCGAAAGTCGGATTAATCGATCAAATCAAACGAGA 180
Query 323 AATATCAGTGATGCGTCTCGTTCGTCACCCCCACGTCGTCTTCCTCCATGAAGTAATGGC 382
||| |||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 181 AATCTCAGTGATGCGTCTCGTTCGTCACCCAAACGTTGTCTTCCTCCATGAAGTAATGGC 240
Query 383 GAGCAAGACAAAGATCTATTTCGCTATGGAATACGTTAAAGGCGGTGAGCTTTTTGATAA 442
|||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 241 GAGCAAAACAAAGATCTATTTCGCTATGGAATACGTTACAGGCGGAGAGCTTTTTGATAA 300
Query 443 AGTCTCTAAAGGAAAGCTTAAAGAAAACATTGCTCGAAAATATTTCCAGCAATTGATCGG 502
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 301 AGTCTCTAAAGGAAAGCTTAAAGAAGACATTGCTCGAAAATATTTCCAGCAATTGATCGG 360
Query 503 AGCAATCGATTATTGCCATAGCCGCGGAGTTTACCACCGCGATCTCAAACCGGAGAATCT 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AGCAATCGATTATTGCCATAGCCGCGGAGTTTACCACCGCGATCTCAAACCGGAGAATCT 420
Query 563 TCTTCTAGACGAAAACGGCGATTTGAAAATATCGGATTTTGGCCTTAGCGCGTTGAGGGA 622
|||||||||||||||||||||| |||||||||| ||||| || |||||||| ||||||||
Sbjct 421 TCTTCTAGACGAAAACGGCGATCTGAAAATATCCGATTTCGGGCTTAGCGCTTTGAGGGA 480
Query 623 GTCGAAGCAGCAAGATGGCTTGCTTCACACGACATGTGGAACACCTGCTTACGTGGCACC 682
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 481 GTCGAAGCAACAAGATGGCTTGCTGCACACGACATGTGGAACACCTGCTTACGTGGCACC 540
Query 683 TGAAGTGATAGGCAAGAAAGGTTATGATGGAGCTAAAGCCGATGTTTGGTCTTGCGGGGT 742
||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 541 TGAAGTGATCGGCAAGAAAGGTTATGATGGAGCGAAAGCCGATGTTTGGTCTTGTGGGGT 600
Query 743 TGTGTTGTACGTGCTATTGGCTGGATTTCTTCCGTTTCACGAGCAAAATCTTGTGGAAAT 802
||||||||| ||| |||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 601 TGTGTTGTATGTGTTATTAGCTGGATTTCTTCCGTTTCACGAGCAAAATCTTGTTGAAAT 660
Query 803 GTATCGGAAAATCACGAAAGGCGAATTCAAATGTCCGAATTGGTTTCCTCCCGAGGTCAA 862
||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||
Sbjct 661 GTATCGGAAAATCACAAAAGGCGAATTCAAATGCCCAAATTGGTTTCCTCCCGAGGTCAA 720
Query 863 GAAGTTGTTGTCTCGGATTCTTGACCCTAACCCTAATTCAAGAATCAAGATTGAAAAAAT 922
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 721 GAAGTTGTTGTCTCGGATTCTTGACCCTAACCCTAATTCAAGAATCAAGATCGACAAAAT 780
Query 923 CATGGAGAATTCCTGGTTTCAAAAGGGTTTCAAGAAGATCGAAACGCCTAAATCTCCCGA 982
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 CATGGAGAATTCTTGGTTTCAAAAGGGTTTCAAGAAGATCGAAACGCCTAAATCTCCCGA 840
Query 983 AAGTCATCAGATCGACTCACTGATCAGCGATGTCCACGCAGCTTTTTCCGTAAAACCGAT 1042
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 841 TAGTCATCAGATCGACTCACTGATCAGCGATGTCCACGCAGCGTTTTCCGTAAAACCGAT 900
Query 1043 GTCTTACAACGCGTTTGACTTGATCTCTTCGCTGTCTCAAGGATTCGATCTCTCGGGTTT 1102
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 901 GTCTTACAACGCGTTTGACTTAATCTCTTCGCTGTCTCAAGGATTCGATCTCTCGGGTTT 960
Query 1103 GTTTGAGAAAGAAGAGAGATCAGAATCGAAGTTTACAACGAAGAAAGATGCAAAAGAGAT 1162
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 961 GTTTGAGAAAGAAGAGAGATCAGAATCGAAGTTTACAACGAAGAAAGAAGCGAAAGAGAT 1020
Query 1163 AGTGTCGAAA-TTCGAGGAGATAGCAACAAGTAGTGAGAGATTCAATTTGACGAAGAGCG 1221
|||||| ||| ||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 1021 AGTGTC-AAAGTTCGAGGAGATAGCATTAAGTAGTGAAAGATTCAATTTGACGAAGAGCA 1079
Query 1222 ATGTAGGAGTGAAGATGGAAGATAAGAGAGAAGGAAGAAAAGGACATCTTGCGATTGATG 1281
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 1080 ATGTAGGAGTGAAGATGGAAGATAAAAGAGAAGGAAGAAAAGGACAGCTTGCGATTGATG 1139
Query 1282 TTGAGATATTTGAAGTGACAAATAGTTTTCATATGGTTGAGTTTAAGAAAAGTGGAGGTG 1341
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 1140 TTGAGATATTTGAAGTGACAAAGAGTTTTCATATGGTAGAGTTTAAGAAAAGTGGAGGTG 1199
Query 1342 ATACAATGGAGTATAAGCAATTTTGTGATCGTGAGCTTAGGCCTTCTTTGAAAGATATTG 1401
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1200 ATACAATGGAGTATAAGCAATTTTGTGATCGTGAGCTTAAGCCTTCTTTGAAAGATATTG 1259
Query 1402 TTTGGAAATGGCAAGGAAACAACAACAATAGCAACAATGAGAAGATTGAAGTGATACATT 1461
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1260 TTTGGAAATGGCAAGGAAACAACAACAATAGCAACAATGAGAAGATTGAAGTGATAAATT 1319
Query 1462 AAATGTGTTTTTCATCTTAT-ATTTTTCTGGATTTGGTTGTTTTTCTTT-AGATCTCCGT 1519
|||| |||||||||||||| ||||| || ||||||||||||||||||| | ||||| ||
Sbjct 1320 AAATCTGTTTTTCATCTTAAGATTTT-CTTGATTTGGTTGTTTTTCTTTTA-ATCTCTGT 1377
Query 1520 GTAAAA-GATGAGATTTATGATAATGGCTGCAATCATCATCACAT 1563
|||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 1378 GTAAAATG-TGAGATTTATGATAATGGCTGCAATCATCATCACAT 1421
> Ahg481948 jgi|Araly1|481948|fgenesh2_kg.4__1008__AT2G30360.1
Length=1758
Score = 122 bits (66), Expect = 6e-27
Identities = 201/263 (76%), Gaps = 21/263 (8%)
Strand=Plus/Plus
Query 366 CTCCATGAAGTAATGGCGAGC-AAGACAAAGATCTAT-TTCGCTATGGAATACGTTAAAG 423
||||| ||||||||||||| | ||| | ||||||| | ||||| ||||| | |||||||
Sbjct 507 CTCCACGAAGTAATGGCGA-CAAAGGCGAAGATCT-TCTTCGCGATGGAGTTTGTTAAAG 564
Query 424 GCGGTGAGCTT-TTTGATAAAGTCTC-TAA-A-GGAAAG-CTTAAAGAA-AACAT-TGCT 476
| |||||| || || | ||| |||| || | || | | |||| ||| ||| | ||
Sbjct 565 GAGGTGAG-TTATTCAACAAAATCTCAAAACATGG-ACGTCTTAGCGAAGAAC-TCAGC- 620
Query 477 CGAAAATATTTCCAGCAATTGATCGGAGCAATCGATTATTGCCATAGC-CGCGGAGTTTA 535
|| | ||| ||||| ||||| ||| || | | |||||| || || ||||| |||||
Sbjct 621 CGTAGATACTTCCAACAATTAATCTCCGCTGTTGGTTATTGTCA-CGCTCGCGGTGTTTA 679
Query 536 CCACCGCGATCTCAAACCGGAGAATCTTCTTC-TAGACGAAAACGGCGATTTGAAAA-TA 593
||||||||||||||||||||||||||| || ||||||||||||| | || |||| |
Sbjct 680 CCACCGCGATCTCAAACCGGAGAATCTG-TTAATAGACGAAAACGGAAACTT-AAAAGTT 737
Query 594 TCGGATTTTGGCCTTAGCGCGTT 616
|| ||||| || |||||||||||
Sbjct 738 TCCGATTTCGGTCTTAGCGCGTT 760
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58582796810
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5