BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G45830.1
Length=1063
Score E
Sequences producing significant alignments: (Bits) Value
Ahg330831 jgi|Araly1|330831|fgenesh1_pm.C_scaffold_8000174 1048 0.0
> Ahg330831 jgi|Araly1|330831|fgenesh1_pm.C_scaffold_8000174
Length=855
Score = 1048 bits (567), Expect = 0.0
Identities = 742/822 (90%), Gaps = 30/822 (4%)
Strand=Plus/Plus
Query 7 TCTTCATCAAAGAACATCGAACAAGCTCAAG--A-TTCTTATCTCGAGTGGATGAGTTTG 63
|||||| |||||||||||||||||||||||| | || ||||| ||||||||||||||||
Sbjct 7 TCTTCAACAAAGAACATCGAACAAGCTCAAGAAAGTTGTTATCACGAGTGGATGAGTTTG 66
Query 64 CAATCTCAACGCATCCCTGAGCTCAAACAACTCTTAGCTCAACGACGATCTCACGGTGAT 123
|| ||||||||||| |||| ||||||||||||||| |||||||||||||||| | |||
Sbjct 67 CAGTCTCAACGCATAAATGAGGTCAAACAACTCTTAGTTCAACGACGATCTCACCGCGAT 126
Query 124 GAAGATA-ATGATAACAAGCTTCGTAAGTTAACGGGAAAAATCATCGGTGATTTCAAAAA 182
||||| | | ||||| ||||| ||| ||||||||||||| ||| | || ||||||||| |
Sbjct 127 GAAGA-ACACGATAAGAAGCTCCGTGAGTTAACGGGAAAGATCCTTGGAGATTTCAAAGA 185
Query 183 TTACGCCGCAAAAAGAGCTGATCTTGCTCACCGATGTAGCTCGAACTATTATGCACCCAC 242
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 186 TTATGCCGGAAAAAGAGCTGATCTTGCTCACCGATGTAGCTCGAACTATTATGCACCGAC 245
Query 243 GTGGAACAGTCCTTTAGAGAACGCTCTAATTTGGATGGGTGGTTGTCGACCATCTTCTTT 302
|||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 246 GTGGAATACTCGTTTAGAGAACGCTCTAATTTGGATGGGTGGTTGTCGACCATCTTCTTT 305
Query 303 CTTTAGGCTCGTTTATGCTTTGTGTGGGTCACAAACTGAGATCCGTGTGACTCAGTTTCT 362
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 306 CTTTAGGCTCATTTATGCTTTGTGTGGGTCACAAACTGAGATACGTGTGACTCAGTTTCT 365
Query 363 CCGCAACATCGACGGCTACGAATCTTC----A--------G--G---T-GGTGGCGGCGG 404
||||||||||||||||||||||||||| | | | | |||||||||||
Sbjct 366 CCGCAACATCGACGGCTACGAATCTTCAGGTAGGGTTTTGGACGTTTTCGGTGGCGGCGG 425
Query 405 T---GCATCACTTAGCGACT-TAAGTGCGGAGCAGCTAGCTAAAATCAATGTGTTGCATG 460
| |||||||||||| | | ||||||||||||||||||| |||||||||||||| ||||
Sbjct 426 TGGCGCATCACTTAGC-AATCTAAGTGCGGAGCAGCTAGCAAAAATCAATGTGTTACATG 484
Query 461 TAAAAATTATAGACGAAGAAGAGAAGATGACCAAGAAAGTCTCAAGCCTACAAGAAGACG 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 485 TAAAAATTATAGACGAAGAAGAGAAGATGACCAAGAAAGTCTCAAGCCTACAAGAAGACG 544
Query 521 CAGCGGATATTCCCATCGCCACTGTGGCTTACGAGATGGAGAATGTCGGAGAGCCTAACG 580
| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 545 CGGCGGATATTCCCATCGCCACTGTGGCTTACGAGATGGAGAATATCGGAGAGCCTAACA 604
Query 581 TAGTGGTGGATCAAGCTCTCGACAAGCAAGAAGAAGCTATGGCTCG-TTTATTGGTCGAG 639
| ||| ||||||||||| ||||||||||||||||||||||||| || |||||||| | ||
Sbjct 605 TGGTGTTGGATCAAGCTTTCGACAAGCAAGAAGAAGCTATGGC-CGGTTTATTGGCCCAG 663
Query 640 GCCGATAATCTAAGGGTTGATACTTTAGCGAAGATCCTCGGGATTCTATCTCCGGTACAA 699
||||||||||||||||| ||||||||||| |||||| ||| ||||||||| |||||||||
Sbjct 664 GCCGATAATCTAAGGGTGGATACTTTAGCAAAGATCGTCGAGATTCTATCGCCGGTACAA 723
Query 700 GGAGCGGATTTCTTGCTCGCTGGGAAAAAGCTTCATCTTTCGATGCATGAGTGGGGAACT 759
| |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 724 GCAGCGGATTTCTTACTCGCCGGGAAAAAGCTTCATCTTTCGATGCATGAGTGGGGAACT 783
Query 760 ATGAGAGATCGTCGCCGTCGTGACTGTATGGTTGACACCGAA 801
| ||||||||||||||||||||| |||||||||||| |||||
Sbjct 784 ACGAGAGATCGTCGCCGTCGTGAATGTATGGTTGACGCCGAA 825
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39571587846
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5