BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G45830.1 Length=1063 Score E Sequences producing significant alignments: (Bits) Value Ahg330831 jgi|Araly1|330831|fgenesh1_pm.C_scaffold_8000174 1048 0.0 > Ahg330831 jgi|Araly1|330831|fgenesh1_pm.C_scaffold_8000174 Length=855 Score = 1048 bits (567), Expect = 0.0 Identities = 742/822 (90%), Gaps = 30/822 (4%) Strand=Plus/Plus Query 7 TCTTCATCAAAGAACATCGAACAAGCTCAAG--A-TTCTTATCTCGAGTGGATGAGTTTG 63 |||||| |||||||||||||||||||||||| | || ||||| |||||||||||||||| Sbjct 7 TCTTCAACAAAGAACATCGAACAAGCTCAAGAAAGTTGTTATCACGAGTGGATGAGTTTG 66 Query 64 CAATCTCAACGCATCCCTGAGCTCAAACAACTCTTAGCTCAACGACGATCTCACGGTGAT 123 || ||||||||||| |||| ||||||||||||||| |||||||||||||||| | ||| Sbjct 67 CAGTCTCAACGCATAAATGAGGTCAAACAACTCTTAGTTCAACGACGATCTCACCGCGAT 126 Query 124 GAAGATA-ATGATAACAAGCTTCGTAAGTTAACGGGAAAAATCATCGGTGATTTCAAAAA 182 ||||| | | ||||| ||||| ||| ||||||||||||| ||| | || ||||||||| | Sbjct 127 GAAGA-ACACGATAAGAAGCTCCGTGAGTTAACGGGAAAGATCCTTGGAGATTTCAAAGA 185 Query 183 TTACGCCGCAAAAAGAGCTGATCTTGCTCACCGATGTAGCTCGAACTATTATGCACCCAC 242 ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 186 TTATGCCGGAAAAAGAGCTGATCTTGCTCACCGATGTAGCTCGAACTATTATGCACCGAC 245 Query 243 GTGGAACAGTCCTTTAGAGAACGCTCTAATTTGGATGGGTGGTTGTCGACCATCTTCTTT 302 |||||| | || |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 246 GTGGAATACTCGTTTAGAGAACGCTCTAATTTGGATGGGTGGTTGTCGACCATCTTCTTT 305 Query 303 CTTTAGGCTCGTTTATGCTTTGTGTGGGTCACAAACTGAGATCCGTGTGACTCAGTTTCT 362 |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 306 CTTTAGGCTCATTTATGCTTTGTGTGGGTCACAAACTGAGATACGTGTGACTCAGTTTCT 365 Query 363 CCGCAACATCGACGGCTACGAATCTTC----A--------G--G---T-GGTGGCGGCGG 404 ||||||||||||||||||||||||||| | | | | ||||||||||| Sbjct 366 CCGCAACATCGACGGCTACGAATCTTCAGGTAGGGTTTTGGACGTTTTCGGTGGCGGCGG 425 Query 405 T---GCATCACTTAGCGACT-TAAGTGCGGAGCAGCTAGCTAAAATCAATGTGTTGCATG 460 | |||||||||||| | | ||||||||||||||||||| |||||||||||||| |||| Sbjct 426 TGGCGCATCACTTAGC-AATCTAAGTGCGGAGCAGCTAGCAAAAATCAATGTGTTACATG 484 Query 461 TAAAAATTATAGACGAAGAAGAGAAGATGACCAAGAAAGTCTCAAGCCTACAAGAAGACG 520 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 485 TAAAAATTATAGACGAAGAAGAGAAGATGACCAAGAAAGTCTCAAGCCTACAAGAAGACG 544 Query 521 CAGCGGATATTCCCATCGCCACTGTGGCTTACGAGATGGAGAATGTCGGAGAGCCTAACG 580 | |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 545 CGGCGGATATTCCCATCGCCACTGTGGCTTACGAGATGGAGAATATCGGAGAGCCTAACA 604 Query 581 TAGTGGTGGATCAAGCTCTCGACAAGCAAGAAGAAGCTATGGCTCG-TTTATTGGTCGAG 639 | ||| ||||||||||| ||||||||||||||||||||||||| || |||||||| | || Sbjct 605 TGGTGTTGGATCAAGCTTTCGACAAGCAAGAAGAAGCTATGGC-CGGTTTATTGGCCCAG 663 Query 640 GCCGATAATCTAAGGGTTGATACTTTAGCGAAGATCCTCGGGATTCTATCTCCGGTACAA 699 ||||||||||||||||| ||||||||||| |||||| ||| ||||||||| ||||||||| Sbjct 664 GCCGATAATCTAAGGGTGGATACTTTAGCAAAGATCGTCGAGATTCTATCGCCGGTACAA 723 Query 700 GGAGCGGATTTCTTGCTCGCTGGGAAAAAGCTTCATCTTTCGATGCATGAGTGGGGAACT 759 | |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 724 GCAGCGGATTTCTTACTCGCCGGGAAAAAGCTTCATCTTTCGATGCATGAGTGGGGAACT 783 Query 760 ATGAGAGATCGTCGCCGTCGTGACTGTATGGTTGACACCGAA 801 | ||||||||||||||||||||| |||||||||||| ||||| Sbjct 784 ACGAGAGATCGTCGCCGTCGTGAATGTATGGTTGACGCCGAA 825 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39571587846 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5