BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G45840.2
Length=2675
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494398 jgi|Araly1|494398|fgenesh2_kg.8__214__AT5G45840.1 2263 0.0
Ahg946328 jgi|Araly1|946328|scaffold_702557.1 804 0.0
> Ahg494398 jgi|Araly1|494398|fgenesh2_kg.8__214__AT5G45840.1
Length=2010
Score = 2263 bits (1225), Expect = 0.0
Identities = 1354/1415 (96%), Gaps = 13/1415 (1%)
Strand=Plus/Plus
Query 1106 TGGGTGCGAAGAGAATCTCATGG-GAAGAATTATGTAGTGAATTATCACCCAAG----T- 1159
||||| ||||| |||||||| || | |||||||||| ||||||||||||||||| |
Sbjct 601 TGGGTCCGAAGGGAATCTCACGGCG-AGAATTATGTCGTGAATTATCACCCAAGTTATTC 659
Query 1160 -GAGAACGAAACTAGTATCTTCAAAAGACGTGAGTTACTCGAGGAAACAAGCAATTTAGC 1218
| |||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 660 AGGGAACAAAACTAGTATCTTCAAAAGGCGTGAGTTACTCGAGGGAACAAGCAATTTAGC 719
Query 1219 GGCTATGCCTGCGCCTGATACGCCCAGTCCTTCTCCTGAGATTATAACTATAGTGTTTCC 1278
||||||||| ||||||||| |||| |||||||||||||||||| |||| | |||||||||
Sbjct 720 GGCTATGCCGGCGCCTGATGCGCCTAGTCCTTCTCCTGAGATTGTAACCAGAGTGTTTCC 779
Query 1279 TCGAAGCAGCGGGTCGTTTCCAGCATTAACTAATGCAAAGAAGAGAATACCTCCATTGAT 1338
||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 780 TCGAAGCAGCGGGTCTTTTCCCGCATTAACTAATGCAAAGAAGAGAATACCACCATTGAT 839
Query 1339 CCCTCCTTCTTCTCCTCCTCCTCTACCTACCAACAACACCATCGCTAGTGATCCACCGAG 1398
| |||||||||||||| | ||| |||||||||||||||||||||| ||||||||||||
Sbjct 840 CTCTCCTTCTTCTCCT--T-CTCCGCCTACCAACAACACCATCGCTAATGATCCACCGAG 896
Query 1399 GAAATTCGAAGAAAAATCGAAAGGGTTTAAGGACGTTTGGTTGTATGTTGTGATCGGTGT 1458
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 897 GAAATTCGAAGAAAAATCGAAAGGGTTTAAGGACGTTTGGTTGTATGTTGTTATTGGTGT 956
Query 1459 TGCTGCTTTCGTAGCGATGCTGATAATAGTAGCGGTTATATTCTTCTTCCGGAAAAGAGC 1518
|||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 957 TGCTGCTTTCATAGCGATGCTGATAATTGTAGCGGTTATATTCTTCTTCCGGAAAAGAGC 1016
Query 1519 TGTGAAGAGTATAGGTCCATGGAAGACTGGTTTGAGTGGACAATTGCAGAAAGCTTTTGT 1578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 TGTGAAGAGTATAGGTCCATGGAAGACTGGTTTGAGTGGACAATTGCAGAAAGCTTTTGT 1076
Query 1579 TACTGGTGTACCTAAGCTAAACCGGTCTGAACTAGAAACAGCCTGTGAAGATTTCAGTAA 1638
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1077 TACTGGTGTACCTAAGCTAAACCTGTCTGAACTAGAAACAGCCTGTGAAGATTTCAGTAA 1136
Query 1639 TATCATTGAAGCATTTGATGGTTACACTGTCTATAAAGGAACTTTGTCCAGTGGCGTTGA 1698
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1137 TATCATTGAAGCATTTGATGGTTACACTGTCTATAAAGGAACTTTGTCAAGTGGCGTTGA 1196
Query 1699 GATTGCGGTTGCTTCAACCGCCATTTTGGAAACTAGGGAATGGACAAGAGCTATGGAAAT 1758
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1197 GATTGCGGTTGCTTCAACCGCGATTTTGGAAACTAGAGAATGGACAAGAGCTATGGAAAT 1256
Query 1759 GACTTACCGCAGAAGGATTGATACAATGTCAAGAGTCAACCATAAGAACTTTATTAATCT 1818
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1257 GACTTACCGCAGAAGGATTGATACAATGTCAAGAGTCAACCATAAGAACTTTGTGAATCT 1316
Query 1819 GATTGGTTATTGCGAAGAAGATGAACCGTTTAATAGGATGATGGTTTTCGAATATGCTCC 1878
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 AATTGGATATTGCGAAGAAGATGAACCGTTTAATAGGATGATGGTTTTCGAATATGCTCC 1376
Query 1879 AAATGGAACTCTTTTCGAACATTTGCATGATAAGGAAATGGAGCATCTTGATTGGAACGC 1938
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 1377 AAATGGAACTCTTTTCGAACATTTGCACGATAAGGAAATGGAACATCTTGATTGGAACGC 1436
Query 1939 GAGGACGAGGATAATAATGGGAACTGCTTATTGTCTGCAATATATGCACGAGCTCAATCC 1998
||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1437 GAGGATGAGGATAATAATGGGAACTGCTTATTGTCTGCAATATATGCACGAGCTTAATCC 1496
Query 1999 TCCAATCTCACACACTAAACTTGTCTCATCAGCAATATACTTAACCGATGATTACGCAGC 2058
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1497 GCCAATCTCACACACTAAACTTGTCTCATCAGCAATCTACTTAACAGATGATTACGCAGC 1556
Query 2059 AAAGGTCGGAGAGGTTCCTTTCAGCGGACAAACCGGGAGTAAACCGAGAAAACCGATGAG 2118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1557 AAAGGTCGGAGAGGTTCCTTTCAGCGGACAAACCGGGAGTAAACCGAGAAAACCGATGAG 1616
Query 2119 TGGTGATTTAGACCAATCTTTATTGCCATTACCTCCTGAACCAGAGACTAATGTCTATAG 2178
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1617 CGGTGATTTAGACCAATCTTTATTGCCATTACCACCTGAACCAGAGACTAATGTCTATAG 1676
Query 2179 CTTTGGAGTATTAATGCTTGAGATAATCTCTGGAAAGCTCTCAGATTCAGAAGAAGAAGG 2238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1677 CTTTGGAGTATTAATGCTTGAGATAATCTCTGGAAAGCTCTCAGATTCAGAAGAAGAAGG 1736
Query 2239 ATCAATTCTAAAATGGGCGTCAAAGTATCTGGAGAATGATAATTTGAGAGATATGATTGA 2298
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1737 ATCAATTCTAAAATGGGCATCAAAGTATCTGGAGAATGATAATTTGAGAGATATGATTGA 1796
Query 2299 TCCTACACTAACAACGTATAAAGAAGAAGAACTTGAAGCTATATGTGACGTGGCACGACA 2358
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1797 TCCTACACTAACAACGTTTAAAGAAGAAGAACTTGAAGCTATATGTGACGTGGCAAGACA 1856
Query 2359 TTGTCTGAAACTTGACGAAAGCCAAAGACCAAAAATGAAATATGTGGTTC-AACAATTGA 2417
||||||||||||||||||||||||||||||||||||||| ||||| | | |||||||||
Sbjct 1857 CTGTCTGAAACTTGACGAAAGCCAAAGACCAAAAATGAAAGATGTGAT-CGAACAATTGA 1915
Query 2418 AAGAAGTAATAAACATATCTCAAGAACAAGCAACACCAAGACTCTCTCCTCTTTGGTGGG 2477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1916 AAGAAGTAATAAACATATCTCAAGAACAAGCAACACCAAGACTCTCTCCTCTTTGGTGGG 1975
Query 2478 CAGAGCTTGAGATCTTATCCTCTGAAGCTACATAA 2512
|||||||||||||||||||||||||||||||||||
Sbjct 1976 CAGAGCTTGAGATCTTATCCTCTGAAGCTACATAA 2010
Score = 929 bits (503), Expect = 0.0
Identities = 570/603 (95%), Gaps = 2/603 (0%)
Strand=Plus/Plus
Query 392 ATGGGTTGTCGATGGAATCCAATTGGGTTCCAATTCTCTTGCTTCATGTTCTTGATCATT 451
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 ATGGGTTGTCGATGGAATCCAATTGGGTTCCAATTCTCTTGCTTTATGTTCTTGATCATT 60
Query 452 ACTCTTCAATCTCGTTCTTCGTTGTCCCTCGAATCCGAAGGATTTGTATTGTTGAAATTC 511
|| ||||||||||| || ||||| ||||||||||||||||||| ||||||||||||||
Sbjct 61 ACCCTTCAATCTCGGTCCTCGTTATCCCTCGAATCCGAAGGATACATATTGTTGAAATTC 120
Query 512 CGGGCAAGAGTTGATTCTGATCCTCATGGAACTCTTGCAAATTGGAATGTTTCTGATCAT 571
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CGGGAAAGAGTTGATTCTGATCCTCATGGAACTCTTGCAAATTGGAATGTTTCTGATCAT 180
Query 572 GATCATTTCTGTTCTTGGTTTGGTGTTACGTGTGTCGACAATAAAGTGCAGATGCTGAAT 631
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 181 GATCATTTGTGTTCTTGGTTTGGTGTTACGTGTGTCGACAATAAAGTGAAGATGCTGAAT 240
Query 632 CTTAGTGGTTGTTCTTTGGGAGGAACTTTAGCTCCGGAGCTTAGTCAATTGAGTGAATTA 691
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 241 CTTAGTGGTTGTTCTTTGGGAGGAACTTTAGCTCCTGAGCTTAGTCAATTGAGTGAATTA 300
Query 692 AGATCTCTAATACTATCCAAGAACAAACTCTCTGGTGACATTCCAAACGAATTTGCGAGT 751
||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 301 AGATCGCTAATACTATCCAAGAACAAACTCTCTGGTGACATTCCAAAGGAATTTGCGAAT 360
Query 752 TTCGCGAAAT-TAGAGTTCTTGGATTTGCGAGATAATAACTTAAACGGAGTAGTTCCACC 810
||||| ||| |||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 361 TTCGC-AAAGCTAGAGTTCTTGGATTTGCGAGATAATAAGTTAAGCGGAGTAGTTCCACC 419
Query 811 CGAGCTAAATAAAGTGTTGACACCAGAAAACTTGTTGCTTTCTGGTAACAAATTTGCGGG 870
||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 420 CGAGCTAAACAAAGTGTTGACACCGGAAAACTTGATGCTTTCTGGTAACAAATTTGCGGG 479
Query 871 TTTTATGACCGTAAAGTTCCTGAGACTTCAATCGCTGTATAAAGTCCAGATGAACAAGAA 930
||||||| || |||||||||||| |||||||||||| |||||||||||| ||||||||||
Sbjct 480 TTTTATGGCCATAAAGTTCCTGAAACTTCAATCGCTATATAAAGTCCAGTTGAACAAGAA 539
Query 931 TCGAGAGCTATCTTCGGTTTCCGCTGATGTCCTCGACTGTGTCAATAGAAAACTTGGATA 990
|| ||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 540 CCGGGAGCTGTCTTCGGTTTCCGCTGATGTCCTTGACTGTGTAAATAGAAAACTTGGATA 599
Query 991 CTG 993
|||
Sbjct 600 CTG 602
> Ahg946328 jgi|Araly1|946328|scaffold_702557.1
Length=2076
Score = 804 bits (435), Expect = 0.0
Identities = 1086/1390 (78%), Gaps = 85/1390 (6%)
Strand=Plus/Plus
Query 1167 AAACTAG-TATCTTCAAAAGACGTGAGTTACTCGAGGAAACAAGCAATTTAGCGGCT-AT 1224
||||| | |||||||||| ||||||||||||||||||| |||| ||||| | |||| |
Sbjct 712 AAACT-GATATCTTCAAACGACGTGAGTTACTCGAGGAGTCAAGTAATTTGGAGGCTGA- 769
Query 1225 GCCTGCGCCTGATACGC-CC-AGTCCTTCTCCTGAGATTATAACT-ATAGTGTT-TCCTC 1280
|||||| ||| | ||| || ||||||||||| |||||||||||| | || || ||||
Sbjct 770 GCCTGCTCCT--TCCGCTCCTAGTCCTTCTCCCGAGATTATAACTGA-AG-CTTCCCCTC 825
Query 1281 GAAGCAGCGGGTCGTTT-CCAGCATTAA-CTAATGCAAAGAAGAGAATACCTCCATTGAT 1338
||||||||||||| ||| || ||| ||| | |||||||||||||||| ||| || || |
Sbjct 826 GAAGCAGCGGGTC-TTTCCCTGCAGTAAGC-AATGCAAAGAAGAGAAGACCGCC-TTTA- 881
Query 1339 CCCTCCTTCTTCT-CCTCCTCCT-CTACCTAC-C-A-ACAACACCATCGCT-AGTGATCC 1392
| | ||| ||| | ||| ||||| || || | | | | ||| || || || |
Sbjct 882 CAC-CCTCCTT-TACCTTCTCCTGATAAGAACACTAGTCTTGA-TATCTCTAAG-AAT-C 936
Query 1393 A-CCGAGGAA-ATTCGAAGAAA-AATCGAAAGGGTTTAAGGACGTTTGGTTGTATGTTG- 1448
| || | || | | || ||| | || ||||| | || | || ||| |||||| ||
Sbjct 937 AGCC-A-CAAGA-T--AATAAACAGTCAAAAGGATCAAAACATGTATGGCTGTATG-TGA 990
Query 1449 TGATCGGTGTTGCTGCTTTCGTAGCG-ATGCTGATAATAGTAGCGGTTATATTCTTCTTC 1507
| |||| ||| || ||||||| | | | ||||| |||||||||||||| ||||||| |
Sbjct 991 TTATCGCCGTTTCTTCTTTCGTCG-GTTTACTGATTATAGTAGCGGTTATCTTCTTCTGC 1049
Query 1508 CGGAAAAGAGCTGTGAAGAGTATAGGTCCATGGAAGACTGGT-TTGAGTGGACAATTGCA 1566
|| |||||||| || ||||| |||||||| ||||| |||||| || ||||||||||||||
Sbjct 1050 CGAAAAAGAGCCGTAAAGAGCATAGGTCCTTGGAAAACTGGTCTT-AGTGGACAATTGCA 1108
Query 1567 GAAAGCTTTTGTTACTGGTGTACCTAAGCTAAACCGGTCTGAACTAGAAACAGCCTGTGA 1626
||||||||||||||| || ||||| ||||| || |||||||| || |||||||| |||||
Sbjct 1109 GAAAGCTTTTGTTACCGGGGTACCAAAGCTCAATCGGTCTGAGCTTGAAACAGCGTGTGA 1168
Query 1627 AGATTTCAGTAATATCATTGAAG-CATTTGATGGTTACACTGTCTATAAAGGAACTTTGT 1685
|||||||| || || | | ||| ||||||| ||||||||||| ||||||||||| ||||
Sbjct 1169 GGATTTCAGCAACATTA-TAAAGACATTTGACGGTTACACTGTGTATAAAGGAACATTGT 1227
Query 1686 CCAGTGGCGTTGAGATTGCGGTTGCTTCAACCGCCATT-TTGGAAACTAGGGAATGGACA 1744
| ||||| |||||||| ||||| ||||||||||| ||| | ||| ||| |||||||||
Sbjct 1228 CGAGTGGTGTTGAGATAGCGGTAGCTTCAACCGCGATTGCT-GAATCTAAAGAATGGACA 1286
Query 1745 AGAGCTATGGAAATGACTTACCGCAGAAGGATTGATACAATGTCA-AGAGTCAACCATAA 1803
|| || ||||||||| | ||||| |||| ||||||| || | ||| || ||||||||||
Sbjct 1287 AGGGCCATGGAAATGGCATACCGTAGAAAGATTGATGCATTATCACGGA-TCAACCATAA 1345
Query 1804 GAACTTTATTAATCTGATTGGTTATTGCGAAGAAGATGAACCGTTTAATAGGATGATGGT 1863
|||||| | ||||||||||| || |||||||||||||| || |||||||||||||||||
Sbjct 1346 AAACTTTGTGAATCTGATTGGATACTGCGAAGAAGATGATCCTTTTAATAGGATGATGGT 1405
Query 1864 -TTTCGAATATGCTCCAAATGGAACTCTTTTCGAACATTTGCATGATAAGGAAATGGAGC 1922
||| |||||||||||||||||||||||||||||||||||||| |||||||| | ||||
Sbjct 1406 CTTT-GAATATGCTCCAAATGGAACTCTTTTCGAACATTTGCACGATAAGGAGACAGAGC 1464
Query 1923 ATCTTGATTGGAACGCGA-GGACGAGGATAATAATGGGAACTGCTTATTGTCTGCAATAT 1981
|||||||||||| ||| | ||| ||| |||||||||||||| ||||| ||||| ||| ||
Sbjct 1465 ATCTTGATTGGAGCGC-ACGGATGAGAATAATAATGGGAACGGCTTACTGTCTACAACAT 1523
Query 1982 ATGCACGAGCTCAATCCTCCAATCTCACACACTAAACTTGT-CTCATCAGCAATATACTT 2040
||||||| | | || || || || | || || | ||| |||||| | ||| ||| |
Sbjct 1524 ATGCACGCGATGAACCCGCCTATGGCTCATACGGA-CTTCAACTCATCGGAAATCTACCT 1582
Query 2041 AACCGATGATTACGCAGCAAAGGTC--GGAGAGGTTCCTTTCAGCGGACAAACCGGGAGT 2098
||||||||| |||||||| |||||| ||||| |||| |||| | | | | | | |
Sbjct 1583 AACCGATGACTACGCAGCCAAGGTCTCGGAGA--TTCCATTCAACTTAGAGGCAAG-ATT 1639
Query 2099 AAA-CCGA-GAAA-ACCGATGAGTGGTGATTTAGACCAATCTTTATTGCCATTACCTCCT 2155
||| |||| |||| | | |||||||||| ||||| ||| | | ||||| | |||||||
Sbjct 1640 AAATCCGAAGAAACAT-G-TGAGTGGTGACTTAGAGCAAACGTCATTGCTACTACCTCCA 1697
Query 2156 GAACCAGAGACTAATGTCTATAGCTTTGGAGTATTAATGCTTGAGATAATCTCTGGAAAG 2215
||||||||| |||| ||| ||||||| ||||| |||||||| || |||||||| ||||||
Sbjct 1698 GAACCAGAGGCTAACGTCCATAGCTTCGGAGTCTTAATGCTCGAAATAATCTCCGGAAAG 1757
Query 2216 CTCTCAGAT-TCAGAAGAAGAAGGATCAATTCTAA-AATGGGCGTCAAAGTATCTGGAGA 2273
||||| | ||||| || | ||||| || | ||||||| |||||||| || || |
Sbjct 1758 CTCTCTT-TCTCAGACGATTACGGATCTATAG-AGCAATGGGCTTCAAAGTACCTTGAAA 1815
Query 2274 ATGAT-AATTTGAGAGATATGATTGATCC-TACACTAACA-ACGTAT-AAAGAAGAAGAA 2329
| || |||| | |||| ||||| ||||| | | ||| | || | | |||||||||||
Sbjct 1816 ACGACGAATTAG-GAGAGATGATAGATCCAT-CGTTAA-AGACAT-TCAAAGAAGAAGAG 1871
Query 2330 CTTGAAGCT-ATATGTGACGTGGCACGACATTGTCTGAAA-CTTGA-CGAAAGCCAAAGA 2386
||||||| | || || || ||| |||| | ||||||||| | || | | || || ||
Sbjct 1872 CTTGAAG-TGATCTGCGATGTGATACGAGAATGTCTGAAAACA-GAAC-AGAGACATCGA 1928
Query 2387 CCAAAAATGAAATATGTGGTTCAACAATTGAAAGAAGTAATAAACATATCTCAAGAACAA 2446
|| |||||| |||| | ||||| | ||| |||| || |||||| ||| ||| ||
Sbjct 1929 CCTTCGATGAAAGATGTAGCGGAACAACTAAAACAAGTTATCAACATAACTCCTGAAAAA 1988
Query 2447 GCAACACCAAGACTC-TCTCCTCTTTGGTGGGCAGAGCTTGAGATCTTATCCTCTGAAGC 2505
|| || |||||| || ||||||||||||||||||||||| || ||||| |||||||||||
Sbjct 1989 GCTACTCCAAGA-TCCTCTCCTCTTTGGTGGGCAGAGCTCGAAATCTTGTCCTCTGAAGC 2047
Query 2506 TACATAACCA 2515
||| | ||||
Sbjct 2048 TACTTGACCA 2057
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100901059005
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5