BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G45850.1
Length=1712
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494397 jgi|Araly1|494397|fgenesh2_kg.8__213__AT5G45850.1 2056 0.0
> Ahg494397 jgi|Araly1|494397|fgenesh2_kg.8__213__AT5G45850.1
Length=1609
Score = 2056 bits (1113), Expect = 0.0
Identities = 1405/1541 (91%), Gaps = 39/1541 (3%)
Strand=Plus/Plus
Query 1 AGAAAACATCACTAACTCTTTAGATTCCTTTT--C-A-TTTA--TA--CATTTTACACTT 52
|||||||||||||||||||||||||||||||| | | |||| || |||||||||| |
Sbjct 1 AGAAAACATCACTAACTCTTTAGATTCCTTTTCACTATTTTATTTATTCATTTTACACAT 60
Query 53 TCTTAATTCTTGACACCTTCTTTAAAGTTTAttt-tttttGGGGTGAAAGAGAGTTCTTG 111
|||| |||||||| || ||||||||||||| ||| ||||| || ||||||||||||||
Sbjct 61 TCTTGATTCTTGA-ACTTTCTTTAAAGTTT-TTTCTTTTTTTTGTTAAAGAGAGTTCTTG 118
Query 112 AAAGGATTTTTATCAGAAGCAAAAATGGAGGAGAAGAAACTAAATTTAGATGCTCCATTC 171
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 119 AAAGGATTTTTATCAGAAGCAACAATGGAGGAGAAGAAACTAAATTTAGATGCTCCATTC 178
Query 172 CTATCCGTGAGGCGAGTTCCGACTAAACCTGATGATCCAAACGAATCAGAGAACACCAAG 231
||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||
Sbjct 179 TTATCCGTGAGGCGAGTTCCTACTAAACCAGAGGATCCAAACGAATCAGAGAACACCAAG 238
Query 232 AAGAAGACGATGACGACGAGAAGGAGAGAAA-TCAAAGATTCATGTCAAGAAACAGAGA- 289
|||||||||| ||| |||||||||||| ||| |||||||||| |||||||||||||| |
Sbjct 239 AAGAAGACGACGACAACGAGAAGGAGA-AAACTCAAAGATTCGTGTCAAGAAACAGA-AC 296
Query 290 ATGAAATTCTGATTCGATTATTACAAGACCAGAGTTTCGAGCATGTAATGGAACCATCGT 349
|||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||| |
Sbjct 297 ATGAAACTCTGATTCGACTATTACAAGACCAGAGTTTCGATCATGTAATGGAACCATCTT 356
Query 350 CAGTTCCTTTCAAATGGGAACAAACACCTGGAAAGCCAAAGGATaaaaaaaaC-CTAGTC 408
|||||||||||||||||||||||||||||||||||||||||||| || | || ||| ||
Sbjct 357 CAGTTCCTTTCAAATGGGAACAAACACCTGGAAAGCCAAAGGAT-CAAGATACACTAATC 415
Query 409 GAAG-AGTCAGACCTAATCAAAGCTATGGAAATGGTTTCTTCAACCGCAAGTTTCTCTGT 467
|||| | | |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 416 GAAGAACT-AGACCTAATCAAAGCTTTGGAAATGGTTTCTTCAACCGCAAGTTTCTCTGT 474
Query 468 TAATTGCAGCTCAAGTGGAGTAAGTGAGTTCGAGAATAATG-GAGATGGAGACAGATCGA 526
||||||||| |||||||||||||||||||||||||| || | ||||||||||||||||||
Sbjct 475 TAATTGCAGTTCAAGTGGAGTAAGTGAGTTCGAGAAGAA-GAGAGATGGAGACAGATCGA 533
Query 527 GTAATG-T-T-TCAAGAGATGACGTCATTCT-TGAATATCGTGATCTCATCATGTCGAGA 582
|||||| | | ||||||||||||||| || | ||||||||||||||||||||||||||||
Sbjct 534 GTAATGATGTATCAAGAGATGACGTCGTT-TATGAATATCGTGATCTCATCATGTCGAGA 592
Query 583 TTTTTACCAGCCGCGGAAGCAATCT-CCTTG-AAAATGAAGAAAGAAGCTTCTCGAGTTA 640
||||||||||||||||||||||| | || || ||||| |||||||||||||||||| |||
Sbjct 593 TTTTTACCAGCCGCGGAAGCAAT-TGCCATGAAAAAT-AAGAAAGAAGCTTCTCGATTTA 650
Query 641 AAGCGGAGAAGAAGAAGAAACAGAGCATTGCTCTACAGAGAGTCTCCATGGCAATTAATC 700
||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 651 AAGAGGAGAAGAAGAAGAAACAGAGCATTGCTCTACAGAGAGTCTCTATGGCAATTAATC 710
Query 701 AAGATTTGAACAACGACGTTGATGATGAGGA-GCAT--TG-TGATCATAATCATGTGGAT 756
||||||| |||||||| | ||||||||||| | || || ||||||||||||||| |||
Sbjct 711 AAGATTTAAACAACGATGAAGATGATGAGGATG-ATGATGATGATCATAATCATGTCGAT 769
Query 757 GGTATTGATGCATTAGTTTACTCAAATGACTCCAAGAAAGGTCAGTTAGGGTTCTTGCCA 816
|||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 770 GGTATTGATGCAACGGTTTACTCAAATGATTCCAAGAAAGCTCAGTTAGGGTTCTTGCCA 829
Query 817 TGGTTCTGTTCCAAGAACTCAGTGGATGTTCTTACCCCGGTT-CTCTCTCGGATCAAGAC 875
|||||||||||||||||||||||||||||||||| || ||| || ||||||||||||||
Sbjct 830 TGGTTCTGTTCCAAGAACTCAGTGGATGTTCTTAATCC-GTTACTTTCTCGGATCAAGAC 888
Query 876 ATGTCAGGATGTTGGAGTAAAATCGGAAAATATCATAAACCCTAAATCGATAGATTCTGT 935
|||||||||| ||||||||||||||| ||||| |||||||| |||||| ||||||||||
Sbjct 889 ATGTCAGGATATTGGAGTAAAATCGGGGAATATAATAAACCCGAAATCGCTAGATTCTGT 948
Query 936 TTACAAAACGAAATCAACATCACCGAGAATCTTCAAATCAAGCAAGGTTATGAGTAAGTC 995
||||||||| |||||| |||||||||||||||| ||| ||| ||||||||||||||||||
Sbjct 949 TTACAAAACAAAATCAGCATCACCGAGAATCTTGAAAACAAACAAGGTTATGAGTAAGTC 1008
Query 996 TCAAGAAATCGATGCAACGCCAAGATTTTCAA-ACGATATTTCCAGGATTTCTCTACCTA 1054
|||||||||| ||| ||| |||||| |||||| | || |||||||| |||||| |||| |
Sbjct 1009 TCAAGAAATCTATGAAACACCAAGACTTTCAAGA-GAGATTTCCAGAATTTCTTTACCGA 1067
Query 1055 AATCCAGAGAAACACTCCAGATCCCGAGAAATCATTCGAGGTTGCAACAAACAACCGATC 1114
||||| | ||||||||| |||||| | |||||| |||||||||||||| |||||||||||
Sbjct 1068 AATCCGGCGAAACACTCAAGATCCAGCGAAATCCTTCGAGGTTGCAACGAACAACCGATC 1127
Query 1115 AGAATCAGAGACAAGAGATTAGGTTTCTTGTGGAAGAAGTAAAGAGAAGGAGCAACAGAA 1174
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1128 AGAATCAGAGACAAGAAATTAGGTTTCTTGTGGAAGAAGTAAAGAGAAGGAGCAACAGAA 1187
Query 1175 ACAAAAACAGGTCAGAGAATCTCTCTGTTTCTCAACCTCCATTGCCTAAAACTCCTTCAG 1234
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1188 ACAAAAACAGGTCAGAAAATCTCTCTGTTTCTCAACCTCCATTGCCTAAAACTCCTTCAG 1247
Query 1235 AGTCTTGGCTTTGCCGGACACTTCCGAGAAGCTCGACCACCTCCTCCGTCGTCTCTGGTC 1294
|||| ||||||||||||||||||||||||||||| |||||||||||||| |||| || |
Sbjct 1248 AGTCGTGGCTTTGCCGGACACTTCCGAGAAGCTCTACCACCTCCTCCGTATTCTCCGGCC 1307
Query 1295 AATTCGCCGTAGTCGTCTCCGGTCAAGCAGCCCGTTTTAAGAAGAATATGGAGAAAAAGA 1354
|||| ||||| ||||||||||||||||| |||||||| |||||||| |||||| ||||||
Sbjct 1308 AATTTGCCGTCGTCGTCTCCGGTCAAGCCGCCCGTTTCAAGAAGAAGATGGAGCAAAAGA 1367
Query 1355 CTGACTCTCAGTCTAAAAAATGGGAGACGATTGTGAAAACATCGTATTCACACCATGATC 1414
|||| |||||||||| | | |||||||||||||||||||||||| || ||||||||||||
Sbjct 1368 CTGAATCTCAGTCTATACATTGGGAGACGATTGTGAAAACATCGAATACACACCATGATC 1427
Query 1415 ATGTTCGCTATTCAGAGGGGCTTATTGTTGTTCATCCTACTCGTCAACACAAATTCTGAA 1474
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1428 ATGTTCGCTACTCAGAGGGGCTTATTGTTGTTCATCCTACTCGTCAACATAAATTCTGAA 1487
Query 1475 AACCGGAATCGTTTTTACTCCATACAGAGTTTCCTTTTTTC 1515
||||||||| |||| |||| ||||| |||||||||||||||
Sbjct 1488 AACCGGAATAGTTTGTACTTCATACCGAGTTTCCTTTTTTC 1528
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64220153070
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5