BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G45860.1
Length=486
Score E
Sequences producing significant alignments: (Bits) Value
Ahg948379 jgi|Araly1|948379|scaffold_800266.1 734 0.0
Ahg948378 jgi|Araly1|948378|scaffold_800265.1 518 2e-146
> Ahg948379 jgi|Araly1|948379|scaffold_800266.1
Length=531
Score = 734 bits (397), Expect = 0.0
Identities = 462/492 (94%), Gaps = 9/492 (2%)
Strand=Plus/Plus
Query 1 ATGGAAACTTCTCAAAAATATCATACGTGCGGTTCCACACTAGTACAAACTATAGATGCT 60
||||| ||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 23 ATGGATACTTCTCAAGAATATCATAAGTGCGGTTCCACACTAGCACAAACTATAGATGCT 82
Query 61 CCACTATCTC-TAGTTTGGTCAATTCTACGTCGGTTTGATAACCCTCAAGCCTACAAACA 119
|||||||| | |||||||||| || || ||||| ||||||||||||||||||||||||||
Sbjct 83 CCACTATC-CATAGTTTGGTCGATACTCCGTCGTTTTGATAACCCTCAAGCCTACAAACA 141
Query 120 ATTCGTGAAAACGTGCAATCTAAGCTCCGGCGATGGAGGAGAAGGCTCCGTCCGTGAAGT 179
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 142 ATTCGTGAAAACGTGCAATCTAAGCTTCGGCGATGGAGGAGCAGGCTCCGTCCGTGAAGT 201
Query 180 GACGGTGGTTTCCGGTCTTCCAGCGGAGTTCAGCCGAGAGAGATTAGATGAACTTGACGA 239
||||||||||||||||||||| || |||||||||| |||||| |||||||||||||||||
Sbjct 202 GACGGTGGTTTCCGGTCTTCCGGCCGAGTTCAGCCAAGAGAGGTTAGATGAACTTGACGA 261
Query 240 TGAGTCTCATGTGATGATGATTAGCATTATAGGTGGTGATCATCGTTTGGTTAATTACCG 299
|||||||||| ||||| | ||||| ||||||||||||||||||||||||||||||||||
Sbjct 262 TGAGTCTCATATGATGGTAATTAGTATTATAGGTGGTGATCATCGTTTGGTTAATTACCA 321
Query 300 GTCGAAAACGATGGCGTTTGTGGCGGCGGAT-ACGGAGGAGAAGACGGTGGTGGTGGAGA 358
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 322 GTCGAAAACGATGGCGTTTGTGGCGGCGGATGA-GGAGGAGAAGACGGTGGTGGTGGAGA 380
Query 359 GTTATGTGGTGGATGTGCCGGAAGGAAATAGTGAGGAGGAAACGACGTCTTTTGCTGATA 418
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 381 GTTATGTGGTTGATGTGCCAGAAGGAAATAGTGAGGAGGAAACGACGTCTTTTGCTGATA 440
Query 419 CA-ATCGTTGGGTTTAATCTTAAGTCATTGGCTAAGCTCTCGGAGA-G--GGTGGCTCAT 474
| ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 441 -ATATCGTTGGGTTTAATCTTAAGTCATTGGCTAAGCTCTCGGAGAAGATGGTGGCTCAT 499
Query 475 CTAAAGTTGTAA 486
||||||||||||
Sbjct 500 CTAAAGTTGTAA 511
> Ahg948378 jgi|Araly1|948378|scaffold_800265.1
Length=528
Score = 518 bits (280), Expect = 2e-146
Identities = 427/496 (86%), Gaps = 18/496 (4%)
Strand=Plus/Plus
Query 1 ATGGAAACTTCTCAAAAATATCATACGTGCGGTTCCACACTAGTACAAACTAT-AGATGC 59
||| |||| ||||||||| | ||| |||||||| ||| ||||||||||||| | ||||
Sbjct 25 ATGAAAACATCTCAAAAACAGCATGTATGCGGTTCGACATTAGTACAAACTATCA-ATGC 83
Query 60 TCCACTATCTCTAGTTTGGTCAATTCTACGTCGGTTTGATAACCCTCAAGCCTACAAACA 119
|||| || ||||||| |||||||| |||||||| ||||||||||| || | || |||||
Sbjct 84 TCCATTACCTCTAGTATGGTCAATCCTACGTCGTTTTGATAACCCAAAAACATATAAACA 143
Query 120 ATTCGTGAAAACGTGCAATCTAAGCTCCGGCGATGGAGGAGAAGGCTCCGTCCGTGAAGT 179
|||||||||| |||| | ||| |||| || |||||||||||||| || |||||||||||
Sbjct 144 GTTCGTGAAAAAGTGCGAGCTACGCTCGGGAGATGGAGGAGAAGGTTCTGTCCGTGAAGT 203
Query 180 GACGGTGGTTTCCGGTCTTCCAGCGGAG-TTCAGCCGAGAGAGATTAGATGAACTTGACG 238
||||||||||| | | |||| || ||| ||||||| ||| |||||||||||||||||||
Sbjct 204 CACGGTGGTTTCAGATTTTCCGGC-GAGTTTCAGCCTAGAAAGATTAGATGAACTTGACG 262
Query 239 ATGAGTCTCATGTGATGATGATTAGCATTATAGGTGGTGATCATCGTTTGGTTAATTACC 298
||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||
Sbjct 263 ATGAGTCTCATGTGATGGTGATCAGCATTATTGGTGGTGATCATCGTTTGGTTAATTACC 322
Query 299 GGTCGAAA-ACGATGGCGTTTGTGGCGGCGGATACGGAGGAGAAGACGGTGGTGGTGGAG 357
|||| ||| ||||||| |||||||||| |||| |||||||||||||||||||| ||||
Sbjct 323 GGTC-AAAGACGATGGTGTTTGTGGCGACGGA---GGAGGAGAAGACGGTGGTGGAGGAG 378
Query 358 AGTTATGTGGTGGATGTGCCGGAAGGAAATAGTGAGGAGGAAACGACGTCT-TTTGCTGA 416
||||||||||||||||||||||||||||||| ||| ||||||||||||| | |||||| |
Sbjct 379 AGTTATGTGGTGGATGTGCCGGAAGGAAATACTGATGAGGAAACGACGT-TGTTTGCTAA 437
Query 417 TACAATCGTTGGGTTTAATCTTAAGTCATTGGCTAAGCTCTCGGAGA-G--GGTGG--CT 471
||| |||||| || |||||||| ||||||||||||| | ||||||| | ||||| ||
Sbjct 438 TACTATCGTTAAGTGTAATCTTAGGTCATTGGCTAAGTTATCGGAGAAGATGGTGGAGCT 497
Query 472 CATC-TAAAGTTGTAA 486
|| | |||||||||||
Sbjct 498 CA-CGTAAAGTTGTAA 512
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17627882118
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5