BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G45860.1 Length=486 Score E Sequences producing significant alignments: (Bits) Value Ahg948379 jgi|Araly1|948379|scaffold_800266.1 734 0.0 Ahg948378 jgi|Araly1|948378|scaffold_800265.1 518 2e-146 > Ahg948379 jgi|Araly1|948379|scaffold_800266.1 Length=531 Score = 734 bits (397), Expect = 0.0 Identities = 462/492 (94%), Gaps = 9/492 (2%) Strand=Plus/Plus Query 1 ATGGAAACTTCTCAAAAATATCATACGTGCGGTTCCACACTAGTACAAACTATAGATGCT 60 ||||| ||||||||| ||||||||| ||||||||||||||||| |||||||||||||||| Sbjct 23 ATGGATACTTCTCAAGAATATCATAAGTGCGGTTCCACACTAGCACAAACTATAGATGCT 82 Query 61 CCACTATCTC-TAGTTTGGTCAATTCTACGTCGGTTTGATAACCCTCAAGCCTACAAACA 119 |||||||| | |||||||||| || || ||||| |||||||||||||||||||||||||| Sbjct 83 CCACTATC-CATAGTTTGGTCGATACTCCGTCGTTTTGATAACCCTCAAGCCTACAAACA 141 Query 120 ATTCGTGAAAACGTGCAATCTAAGCTCCGGCGATGGAGGAGAAGGCTCCGTCCGTGAAGT 179 |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| Sbjct 142 ATTCGTGAAAACGTGCAATCTAAGCTTCGGCGATGGAGGAGCAGGCTCCGTCCGTGAAGT 201 Query 180 GACGGTGGTTTCCGGTCTTCCAGCGGAGTTCAGCCGAGAGAGATTAGATGAACTTGACGA 239 ||||||||||||||||||||| || |||||||||| |||||| ||||||||||||||||| Sbjct 202 GACGGTGGTTTCCGGTCTTCCGGCCGAGTTCAGCCAAGAGAGGTTAGATGAACTTGACGA 261 Query 240 TGAGTCTCATGTGATGATGATTAGCATTATAGGTGGTGATCATCGTTTGGTTAATTACCG 299 |||||||||| ||||| | ||||| |||||||||||||||||||||||||||||||||| Sbjct 262 TGAGTCTCATATGATGGTAATTAGTATTATAGGTGGTGATCATCGTTTGGTTAATTACCA 321 Query 300 GTCGAAAACGATGGCGTTTGTGGCGGCGGAT-ACGGAGGAGAAGACGGTGGTGGTGGAGA 358 ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| Sbjct 322 GTCGAAAACGATGGCGTTTGTGGCGGCGGATGA-GGAGGAGAAGACGGTGGTGGTGGAGA 380 Query 359 GTTATGTGGTGGATGTGCCGGAAGGAAATAGTGAGGAGGAAACGACGTCTTTTGCTGATA 418 |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 381 GTTATGTGGTTGATGTGCCAGAAGGAAATAGTGAGGAGGAAACGACGTCTTTTGCTGATA 440 Query 419 CA-ATCGTTGGGTTTAATCTTAAGTCATTGGCTAAGCTCTCGGAGA-G--GGTGGCTCAT 474 | ||||||||||||||||||||||||||||||||||||||||||| | |||||||||| Sbjct 441 -ATATCGTTGGGTTTAATCTTAAGTCATTGGCTAAGCTCTCGGAGAAGATGGTGGCTCAT 499 Query 475 CTAAAGTTGTAA 486 |||||||||||| Sbjct 500 CTAAAGTTGTAA 511 > Ahg948378 jgi|Araly1|948378|scaffold_800265.1 Length=528 Score = 518 bits (280), Expect = 2e-146 Identities = 427/496 (86%), Gaps = 18/496 (4%) Strand=Plus/Plus Query 1 ATGGAAACTTCTCAAAAATATCATACGTGCGGTTCCACACTAGTACAAACTAT-AGATGC 59 ||| |||| ||||||||| | ||| |||||||| ||| ||||||||||||| | |||| Sbjct 25 ATGAAAACATCTCAAAAACAGCATGTATGCGGTTCGACATTAGTACAAACTATCA-ATGC 83 Query 60 TCCACTATCTCTAGTTTGGTCAATTCTACGTCGGTTTGATAACCCTCAAGCCTACAAACA 119 |||| || ||||||| |||||||| |||||||| ||||||||||| || | || ||||| Sbjct 84 TCCATTACCTCTAGTATGGTCAATCCTACGTCGTTTTGATAACCCAAAAACATATAAACA 143 Query 120 ATTCGTGAAAACGTGCAATCTAAGCTCCGGCGATGGAGGAGAAGGCTCCGTCCGTGAAGT 179 |||||||||| |||| | ||| |||| || |||||||||||||| || ||||||||||| Sbjct 144 GTTCGTGAAAAAGTGCGAGCTACGCTCGGGAGATGGAGGAGAAGGTTCTGTCCGTGAAGT 203 Query 180 GACGGTGGTTTCCGGTCTTCCAGCGGAG-TTCAGCCGAGAGAGATTAGATGAACTTGACG 238 ||||||||||| | | |||| || ||| ||||||| ||| ||||||||||||||||||| Sbjct 204 CACGGTGGTTTCAGATTTTCCGGC-GAGTTTCAGCCTAGAAAGATTAGATGAACTTGACG 262 Query 239 ATGAGTCTCATGTGATGATGATTAGCATTATAGGTGGTGATCATCGTTTGGTTAATTACC 298 ||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||| Sbjct 263 ATGAGTCTCATGTGATGGTGATCAGCATTATTGGTGGTGATCATCGTTTGGTTAATTACC 322 Query 299 GGTCGAAA-ACGATGGCGTTTGTGGCGGCGGATACGGAGGAGAAGACGGTGGTGGTGGAG 357 |||| ||| ||||||| |||||||||| |||| |||||||||||||||||||| |||| Sbjct 323 GGTC-AAAGACGATGGTGTTTGTGGCGACGGA---GGAGGAGAAGACGGTGGTGGAGGAG 378 Query 358 AGTTATGTGGTGGATGTGCCGGAAGGAAATAGTGAGGAGGAAACGACGTCT-TTTGCTGA 416 ||||||||||||||||||||||||||||||| ||| ||||||||||||| | |||||| | Sbjct 379 AGTTATGTGGTGGATGTGCCGGAAGGAAATACTGATGAGGAAACGACGT-TGTTTGCTAA 437 Query 417 TACAATCGTTGGGTTTAATCTTAAGTCATTGGCTAAGCTCTCGGAGA-G--GGTGG--CT 471 ||| |||||| || |||||||| ||||||||||||| | ||||||| | ||||| || Sbjct 438 TACTATCGTTAAGTGTAATCTTAGGTCATTGGCTAAGTTATCGGAGAAGATGGTGGAGCT 497 Query 472 CATC-TAAAGTTGTAA 486 || | ||||||||||| Sbjct 498 CA-CGTAAAGTTGTAA 512 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 17627882118 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5