BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G45870.1
Length=480
Score E
Sequences producing significant alignments: (Bits) Value
Ahg948378 jgi|Araly1|948378|scaffold_800265.1 688 0.0
Ahg948379 jgi|Araly1|948379|scaffold_800266.1 475 1e-133
> Ahg948378 jgi|Araly1|948378|scaffold_800265.1
Length=528
Score = 688 bits (372), Expect = 0.0
Identities = 446/482 (93%), Gaps = 4/482 (1%)
Strand=Plus/Plus
Query 1 ATGAAAACATCTCAAGAACAGCATGTATGCGGTTCGACAGTAGTACAAACTATCAATGCT 60
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 25 ATGAAAACATCTCAAAAACAGCATGTATGCGGTTCGACATTAGTACAAACTATCAATGCT 84
Query 61 CCGTTACCTCTAGTATGGTCGATCCTACGTCGATTTGATAACCCAAAAACATTTAAACAT 120
|| ||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||
Sbjct 85 CCATTACCTCTAGTATGGTCAATCCTACGTCGTTTTGATAACCCAAAAACATATAAACAG 144
Query 121 TTCGT-AAAAACTTGTAAACTACGCTCCGGCGATGGAGGAGAAGGCTCTGTCCGTGAAGT 179
||||| ||||| || | |||||||| || |||||||||||||| ||||||||||||||
Sbjct 145 TTCGTGAAAAA-GTGCGAGCTACGCTCGGGAGATGGAGGAGAAGGTTCTGTCCGTGAAGT 203
Query 180 CACGGTGGTTTCCGATCTTCCGGCGAGTTTTAGCCTAGAAAGATTAGATGAACTTGACGA 239
|||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 204 CACGGTGGTTTCAGATTTTCCGGCGAGTTTCAGCCTAGAAAGATTAGATGAACTTGACGA 263
Query 240 TGAGTCTCATGTGATGGTGATCAGCATTATTGGTGGTGATCATCGTTTGGTTAATTACCA 299
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 264 TGAGTCTCATGTGATGGTGATCAGCATTATTGGTGGTGATCATCGTTTGGTTAATTACCG 323
Query 300 GTCGAAA-ACTACGGTGTTTGTGGCGGCGGAGGAGGAGAAGACAGTGGTTGTGGAGAGTT 358
||| ||| || | ||||||||||||| |||||||||||||||| ||||| | ||||||||
Sbjct 324 GTC-AAAGACGATGGTGTTTGTGGCGACGGAGGAGGAGAAGACGGTGGTGGAGGAGAGTT 382
Query 359 ATGTGGTGGATGTGCCGGAAGGAAATACTGAGGAAGAAACTACGTTGTTTGCTGATACTA 418
||||||||||||||||||||||||||||||| || ||||| |||||||||||| ||||||
Sbjct 383 ATGTGGTGGATGTGCCGGAAGGAAATACTGATGAGGAAACGACGTTGTTTGCTAATACTA 442
Query 419 TCGTTGGGTGTAATCTTAGGTCATTGGCTAAGTTATCGGAGAAGATGATGGAGCTCACTT 478
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 443 TCGTTAAGTGTAATCTTAGGTCATTGGCTAAGTTATCGGAGAAGATGGTGGAGCTCACGT 502
Query 479 AA 480
||
Sbjct 503 AA 504
> Ahg948379 jgi|Araly1|948379|scaffold_800266.1
Length=531
Score = 475 bits (257), Expect = 1e-133
Identities = 400/468 (85%), Gaps = 13/468 (3%)
Strand=Plus/Plus
Query 10 TCTCAAGAACAGCATGTA-TGCGGTTCGACAGTAGTACAAACTATCA-ATGCTCCGTTA- 66
||||||||| | ||| | |||||||| ||| ||| ||||||||| | ||||||| ||
Sbjct 32 TCTCAAGAATATCAT-AAGTGCGGTTCCACACTAGCACAAACTAT-AGATGCTCCACTAT 89
Query 67 CCTCTAGTATGGTCGATCCTACGTCGATTTGATAACCCAAAAACATTTAAACATTTCGTA 126
|| |||| |||||||| || ||||| ||||||||||| || | | ||||| |||||
Sbjct 90 CC-ATAGTTTGGTCGATACTCCGTCGTTTTGATAACCCTCAAGCCTACAAACAATTCGTG 148
Query 127 AAAACTTGTAAACTACGCTCCGGCGATGGAGGAGAAGGCTCTGTCCGTGAAGTCACGGTG 186
||||| || || ||| ||| |||||||||||||| |||||| ||||||||||| ||||||
Sbjct 149 AAAACGTGCAATCTAAGCTTCGGCGATGGAGGAGCAGGCTCCGTCCGTGAAGTGACGGTG 208
Query 187 GTTTCCGATCTTCCGG-CGAGTTTTAGCCTAGAAAGATTAGATGAACTTGACGATGAGTC 245
||||||| |||||||| |||| || |||| ||| || |||||||||||||||||||||||
Sbjct 209 GTTTCCGGTCTTCCGGCCGAG-TTCAGCCAAGAGAGGTTAGATGAACTTGACGATGAGTC 267
Query 246 TCATGTGATGGTGATCAGCATTATTGGTGGTGATCATCGTTTGGTTAATTACCAGTCGAA 305
|||| ||||||| || || ||||| |||||||||||||||||||||||||||||||||||
Sbjct 268 TCATATGATGGTAATTAGTATTATAGGTGGTGATCATCGTTTGGTTAATTACCAGTCGAA 327
Query 306 AACTACGGTGTTTGTGGCGGCGGA-G-G-AGGAGAAGACAGTGGTTGTGGAGAGTTATGT 362
||| | || ||||||||||||||| | | |||||||||| ||||| ||||||||||||||
Sbjct 328 AACGATGGCGTTTGTGGCGGCGGATGAGGAGGAGAAGACGGTGGTGGTGGAGAGTTATGT 387
Query 363 GGTGGATGTGCCGGAAGGAAATACTGAGGAAGAAACTACGT-TGTTTGCTGATACTATCG 421
||| |||||||| |||||||||| |||||| ||||| |||| | |||||||||| |||||
Sbjct 388 GGTTGATGTGCCAGAAGGAAATAGTGAGGAGGAAACGACGTCT-TTTGCTGATAATATCG 446
Query 422 TTGGGTGTAATCTTAGGTCATTGGCTAAGTTATCGGAGAAGATGATGG 469
|||||| |||||||| ||||||||||||| | |||||||||||| |||
Sbjct 447 TTGGGTTTAATCTTAAGTCATTGGCTAAGCTCTCGGAGAAGATGGTGG 494
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17398948584
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5