BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G45875.1
Length=282
Score E
Sequences producing significant alignments: (Bits) Value
Ahg318576 jgi|Araly1|318576|fgenesh1_pm.C_scaffold_3001592 388 8e-108
> Ahg318576 jgi|Araly1|318576|fgenesh1_pm.C_scaffold_3001592
Length=276
Score = 388 bits (210), Expect = 8e-108
Identities = 260/283 (92%), Gaps = 8/283 (3%)
Strand=Plus/Plus
Query 1 ATGAAGTCTACTACCTTGTTCATGGTTTCTTGTGTTCTCATATTTTGTGTTCTTAGTCAC 60
|||||||||||||| ||||| |||||||||||||||||||| |||| |||||||||||||
Sbjct 1 ATGAAGTCTACTACTTTGTTTATGGTTTCTTGTGTTCTCATGTTTTATGTTCTTAGTCAC 60
Query 61 GTGAGAGAGGTGAAATCGGTGGAGACTAAGGCC-AAGAGAGTGAAGAAGGTGTGCGAAAA 119
|||||||||||||||||||| | | | ||| ||||| ||||||||||||||||||||
Sbjct 61 GTGAGAGAGGTGAAATCGGT-G-G-C----GCCGAAGAGGGTGAAGAAGGTGTGCGAAAA 113
Query 120 GGCACAAGTATTCGAACAAAATTGTGGGTGGGACGGAAACAAAACTTGCATAAGAGGCTT 179
| | ||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 114 GTCGCAAGTATTCAAACAAAATTGTGGGTGGAACGGAAACAAGACTTGCATAAGAGGCTT 173
Query 180 TAATAAAATCAAAGAATACCCTTTTCATTGCGAGTGTGGCATTTATGATGCACCCAATAG 239
||||||||| || ||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 174 TAATAAAATTAAGGAATACCCTTTTCATTGCGAGTGTGGCATTTATGATGAACTCAATAG 233
Query 240 CAGACGTATTTGCAAATGTAAATTTCCATATTCTCCTTGCTAA 282
||||||| |||||||||||||||||||||||||||||||||||
Sbjct 234 CAGACGTCTTTGCAAATGTAAATTTCCATATTCTCCTTGCTAA 276
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9844141962
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5