BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G45875.1 Length=282 Score E Sequences producing significant alignments: (Bits) Value Ahg318576 jgi|Araly1|318576|fgenesh1_pm.C_scaffold_3001592 388 8e-108 > Ahg318576 jgi|Araly1|318576|fgenesh1_pm.C_scaffold_3001592 Length=276 Score = 388 bits (210), Expect = 8e-108 Identities = 260/283 (92%), Gaps = 8/283 (3%) Strand=Plus/Plus Query 1 ATGAAGTCTACTACCTTGTTCATGGTTTCTTGTGTTCTCATATTTTGTGTTCTTAGTCAC 60 |||||||||||||| ||||| |||||||||||||||||||| |||| ||||||||||||| Sbjct 1 ATGAAGTCTACTACTTTGTTTATGGTTTCTTGTGTTCTCATGTTTTATGTTCTTAGTCAC 60 Query 61 GTGAGAGAGGTGAAATCGGTGGAGACTAAGGCC-AAGAGAGTGAAGAAGGTGTGCGAAAA 119 |||||||||||||||||||| | | | ||| ||||| |||||||||||||||||||| Sbjct 61 GTGAGAGAGGTGAAATCGGT-G-G-C----GCCGAAGAGGGTGAAGAAGGTGTGCGAAAA 113 Query 120 GGCACAAGTATTCGAACAAAATTGTGGGTGGGACGGAAACAAAACTTGCATAAGAGGCTT 179 | | ||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||| Sbjct 114 GTCGCAAGTATTCAAACAAAATTGTGGGTGGAACGGAAACAAGACTTGCATAAGAGGCTT 173 Query 180 TAATAAAATCAAAGAATACCCTTTTCATTGCGAGTGTGGCATTTATGATGCACCCAATAG 239 ||||||||| || ||||||||||||||||||||||||||||||||||||| || |||||| Sbjct 174 TAATAAAATTAAGGAATACCCTTTTCATTGCGAGTGTGGCATTTATGATGAACTCAATAG 233 Query 240 CAGACGTATTTGCAAATGTAAATTTCCATATTCTCCTTGCTAA 282 ||||||| ||||||||||||||||||||||||||||||||||| Sbjct 234 CAGACGTCTTTGCAAATGTAAATTTCCATATTCTCCTTGCTAA 276 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 9844141962 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5