BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G45880.1 Length=895 Score E Sequences producing significant alignments: (Bits) Value Ahg494394 jgi|Araly1|494394|fgenesh2_kg.8__210__AT5G45880.1 1245 0.0 Ahg492999 jgi|Araly1|492999|fgenesh2_kg.7__2432__AT4G18596.1 566 1e-160 > Ahg494394 jgi|Araly1|494394|fgenesh2_kg.8__210__AT5G45880.1 Length=771 Score = 1245 bits (674), Expect = 0.0 Identities = 743/775 (96%), Gaps = 10/775 (1%) Strand=Plus/Plus Query 1 TTGTCCTCTTCTCAAACATATCTCAACTTATTGTTTGAATATaaaaagagatatcaaaaa 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 TTGTCCTCTTCTCAAACATATCTCAACTTATTGTTTGAATATAAAAAGAGATATCAAAAA 60 Query 61 gaagagaagaccaaaaacaaaac-aaaaatctctaataaaaaTGGCTTCCAAAGCTATCT 119 ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| Sbjct 61 GAAGAGAAGACCAAAAACAAAACCAAAAATCTCTAACAAAAATGGCTTCCAAAGCTATCT 120 Query 120 TCTTCTCTTTCTTTGTCGTCTCCGCCGTGTGTTTGTCTTCTCTGGCAGGTTTCGCCGCCG 179 |||||||||||||||| || ||||||||||||||||||||||| || ||||||||||||| Sbjct 121 TCTTCTCTTTCTTTGTTGTTTCCGCCGTGTGTTTGTCTTCTCTCGCCGGTTTCGCCGCCG 180 Query 180 CTGATGCTGACGACTTCGATCGTTTCCAGATTCAAGGATCAGTTTACTGTGACACTTGCC 239 |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 181 CTGATGCTGATGACTTCGATCGTTTCCAGATTCAGGGATCAGTTTACTGTGACACTTGCC 240 Query 240 GTGTCCAATTCGTTACCCGTCTCAGCAAATTCCTCGAAGGCGCGAAAGTGAAGTTGGAGT 299 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 241 GTGTCCAATTCGTTACCCGTCTCAGCAAATTCCTCGAAGGTGCGAAAGTGAAGTTGGAGT 300 Query 300 GCAGGAGCAGAACAAACGGAACCATAACATTGACCAAAGAAGCTGTTACCGACAAAACAG 359 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 301 GCAGGAGCAGAACAAACGGAACCGTAACATTGACCAAAGAAGCTGTTACCGACAAAACAG 360 Query 360 GAAGCTACAAAATGGAAGTAACCGGTGACCACGAGGAAGAAGTTTGCGAGCTTGTTTTGG 419 |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 361 GAAGCTACAAGATGGAAGTAACTGGTGACCACGAGGAAGAAGTTTGCGAGCTTGTTTTGG 420 Query 420 TCCAATCACCAGACAGTGGTTGCAGTGATGTCAGCACAGAGGCTTACTTACGTAACGCCG 479 |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| Sbjct 421 TCCAATCACCAGACAGTGGTTGCAGTGACGTCAGCAAAGAGGCTTACTTACGTAACGCCG 480 Query 480 CTAAGATCAGTTTAACGGCGAATGACGGAATCGTCTCCCACGAGACACGTATTGTTAACC 539 ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| Sbjct 481 CTAAGATCAGTTTAACGGCGAATGACGGAATCGTCTCTCACGAGACACGTATCGTTAACC 540 Query 540 CTCTCGGTTTCATGGTTCAGACTCCATTGGCTGATTGTCCTGCTGCTTTCAAGGAGCTTG 599 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 CTCTCGGTTTCATGGTTCAGACTCCATTGGCTGATTGTCCTGCTGCTTTCAAGGAGCTTG 600 Query 600 GTATTGTCCCTGACGTAACATTCTAAGCGaaaagaaaaa-aaagaaaaaaaCATATA--A 656 |||||||||||||||| ||||||||||||||| |||| | ||| ||||||||||||| | Sbjct 601 GTATTGTCCCTGACGTCACATTCTAAGCGAAA-GAAAGAGAAA-AAAAAAACATATATGA 658 Query 657 CATGAGAGATTTTCTATTTGCTTAACTTTATCAAGTTTATAACCAT-ATAATGAATTAAT 715 ||||||||||||||||||||||||| |||||||||||||| | ||| ||||||||||||| Sbjct 659 CATGAGAGATTTTCTATTTGCTTAATTTTATCAAGTTTATTATCATTATAATGAATTAAT 718 Query 716 ATCATCATTAATTACCTTTTCACGTTTTGGTTTTGTTTGATTT-GATGTGTGAGT 769 |||||||||||||| ||||| |||||||||||||||| |||| ||||||||||| Sbjct 719 ATCATCATTAATTAA-TTTTCGCGTTTTGGTTTTGTTT-ATTTTGATGTGTGAGT 771 > Ahg492999 jgi|Araly1|492999|fgenesh2_kg.7__2432__AT4G18596.1 Length=667 Score = 566 bits (306), Expect = 1e-160 Identities = 456/529 (86%), Gaps = 7/529 (1%) Strand=Plus/Plus Query 99 aaaTGGCTTCCAAAGCTATCTTCTTC-TCTTTCTTTGTCGTCTCCGCCGTGTGTTTGTCT 157 ||||||| |||||||| ||||||||| || ||| || | |||||||||||||| |||| Sbjct 93 AAATGGCGTCCAAAGCCATCTTCTTCTTC-TTC-TT-T-GTCTCCGCCGTGTGCCTGTCC 148 Query 158 TCTCTGGCAGGTTTCGCCGCCGCTGATGCTGACGACTTCGATCGTTTCCAGATTCAAGGA 217 ||||| || || | ||| |||||| || || ||||| || |||||||| ||||||||| Sbjct 149 TCTCTCGCCGGCGTGGCCATCGCTGACGCCGATGACTTTGACCGTTTCCAAATTCAAGGA 208 Query 218 TCAGTTTACTGTGACACTTGCCGTGTCCAATTCGTTACCCGTCTCAGCAAATTCCTCGAA 277 || ||||| |||||||| ||||||||||||||||||||||| |||||||| ||||| ||| Sbjct 209 TCGGTTTATTGTGACACATGCCGTGTCCAATTCGTTACCCGCCTCAGCAAGTTCCTTGAA 268 Query 278 GGCGCGAAAGTGAAGTTGGAGTGCAGGAGCAGAACAAACGGAACCATAACATTGACCAAA 337 || |||||||||||| | ||||||||||||||||||||||||||| |||||||||| ||| Sbjct 269 GGAGCGAAAGTGAAGCTAGAGTGCAGGAGCAGAACAAACGGAACCGTAACATTGACAAAA 328 Query 338 GAAGCTGTTACCGACAAAACAGGAAGCTACAAAATGGAAGTAACCGGTGACCACGAGGAA 397 ||||| || || ||||||||||| ||||||| ||||||||| ||||||||||||||||| Sbjct 329 GAAGCCGTCACGGACAAAACAGGGAGCTACAGAATGGAAGTGACCGGTGACCACGAGGAG 388 Query 398 GAAGTTTGCGAGCTTGTTTTGGTCCAATCACCAGACAGTGGTTGCAGTGATGTCAGCACA 457 ||||||||||||||||| | ||| ||||||||||||||||||||||||| || |||| | Sbjct 389 GAAGTTTGCGAGCTTGTGCTCGTCGAATCACCAGACAGTGGTTGCAGTGACGTTAGCAAA 448 Query 458 GAGGCTTACTTACGTAACGCCGCTAAGATCAGTTTAACGGCGAATGACGGAATCGTCTCC 517 ||||||||| |||||||||| ||||||||||| || || |||||||| ||||||||||| Sbjct 449 GAGGCTTACCTACGTAACGCTGCTAAGATCAGCTTGACCGCGAATGATGGAATCGTCTCT 508 Query 518 CACGAGACACGTATTGTTAACCCTCTCGGTTTCATGGTTCAGACTCCATTGGCTGATTGT 577 ||||||||||||||||||||||||||||| ||||||||| |||| || | |||| ||| Sbjct 509 CACGAGACACGTATTGTTAACCCTCTCGGCTTCATGGTTAAGACGCCGTCACCTGAATGT 568 Query 578 CCTGCTGC-TTTCAAGGAGCTTGGTATTGTCCCTGACGTAACATTCTAA 625 || ||||| ||| |||||||| || || || ||||| || || |||||| Sbjct 569 CCCGCTGCCTTT-AAGGAGCTCGGAATCGTTCCTGATGTCACCTTCTAA 616 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 33166937790 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5