BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G45880.1
Length=895
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494394 jgi|Araly1|494394|fgenesh2_kg.8__210__AT5G45880.1 1245 0.0
Ahg492999 jgi|Araly1|492999|fgenesh2_kg.7__2432__AT4G18596.1 566 1e-160
> Ahg494394 jgi|Araly1|494394|fgenesh2_kg.8__210__AT5G45880.1
Length=771
Score = 1245 bits (674), Expect = 0.0
Identities = 743/775 (96%), Gaps = 10/775 (1%)
Strand=Plus/Plus
Query 1 TTGTCCTCTTCTCAAACATATCTCAACTTATTGTTTGAATATaaaaagagatatcaaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTGTCCTCTTCTCAAACATATCTCAACTTATTGTTTGAATATAAAAAGAGATATCAAAAA 60
Query 61 gaagagaagaccaaaaacaaaac-aaaaatctctaataaaaaTGGCTTCCAAAGCTATCT 119
||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 61 GAAGAGAAGACCAAAAACAAAACCAAAAATCTCTAACAAAAATGGCTTCCAAAGCTATCT 120
Query 120 TCTTCTCTTTCTTTGTCGTCTCCGCCGTGTGTTTGTCTTCTCTGGCAGGTTTCGCCGCCG 179
|||||||||||||||| || ||||||||||||||||||||||| || |||||||||||||
Sbjct 121 TCTTCTCTTTCTTTGTTGTTTCCGCCGTGTGTTTGTCTTCTCTCGCCGGTTTCGCCGCCG 180
Query 180 CTGATGCTGACGACTTCGATCGTTTCCAGATTCAAGGATCAGTTTACTGTGACACTTGCC 239
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 181 CTGATGCTGATGACTTCGATCGTTTCCAGATTCAGGGATCAGTTTACTGTGACACTTGCC 240
Query 240 GTGTCCAATTCGTTACCCGTCTCAGCAAATTCCTCGAAGGCGCGAAAGTGAAGTTGGAGT 299
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 241 GTGTCCAATTCGTTACCCGTCTCAGCAAATTCCTCGAAGGTGCGAAAGTGAAGTTGGAGT 300
Query 300 GCAGGAGCAGAACAAACGGAACCATAACATTGACCAAAGAAGCTGTTACCGACAAAACAG 359
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 301 GCAGGAGCAGAACAAACGGAACCGTAACATTGACCAAAGAAGCTGTTACCGACAAAACAG 360
Query 360 GAAGCTACAAAATGGAAGTAACCGGTGACCACGAGGAAGAAGTTTGCGAGCTTGTTTTGG 419
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 361 GAAGCTACAAGATGGAAGTAACTGGTGACCACGAGGAAGAAGTTTGCGAGCTTGTTTTGG 420
Query 420 TCCAATCACCAGACAGTGGTTGCAGTGATGTCAGCACAGAGGCTTACTTACGTAACGCCG 479
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 421 TCCAATCACCAGACAGTGGTTGCAGTGACGTCAGCAAAGAGGCTTACTTACGTAACGCCG 480
Query 480 CTAAGATCAGTTTAACGGCGAATGACGGAATCGTCTCCCACGAGACACGTATTGTTAACC 539
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 481 CTAAGATCAGTTTAACGGCGAATGACGGAATCGTCTCTCACGAGACACGTATCGTTAACC 540
Query 540 CTCTCGGTTTCATGGTTCAGACTCCATTGGCTGATTGTCCTGCTGCTTTCAAGGAGCTTG 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CTCTCGGTTTCATGGTTCAGACTCCATTGGCTGATTGTCCTGCTGCTTTCAAGGAGCTTG 600
Query 600 GTATTGTCCCTGACGTAACATTCTAAGCGaaaagaaaaa-aaagaaaaaaaCATATA--A 656
|||||||||||||||| ||||||||||||||| |||| | ||| ||||||||||||| |
Sbjct 601 GTATTGTCCCTGACGTCACATTCTAAGCGAAA-GAAAGAGAAA-AAAAAAACATATATGA 658
Query 657 CATGAGAGATTTTCTATTTGCTTAACTTTATCAAGTTTATAACCAT-ATAATGAATTAAT 715
||||||||||||||||||||||||| |||||||||||||| | ||| |||||||||||||
Sbjct 659 CATGAGAGATTTTCTATTTGCTTAATTTTATCAAGTTTATTATCATTATAATGAATTAAT 718
Query 716 ATCATCATTAATTACCTTTTCACGTTTTGGTTTTGTTTGATTT-GATGTGTGAGT 769
|||||||||||||| ||||| |||||||||||||||| |||| |||||||||||
Sbjct 719 ATCATCATTAATTAA-TTTTCGCGTTTTGGTTTTGTTT-ATTTTGATGTGTGAGT 771
> Ahg492999 jgi|Araly1|492999|fgenesh2_kg.7__2432__AT4G18596.1
Length=667
Score = 566 bits (306), Expect = 1e-160
Identities = 456/529 (86%), Gaps = 7/529 (1%)
Strand=Plus/Plus
Query 99 aaaTGGCTTCCAAAGCTATCTTCTTC-TCTTTCTTTGTCGTCTCCGCCGTGTGTTTGTCT 157
||||||| |||||||| ||||||||| || ||| || | |||||||||||||| ||||
Sbjct 93 AAATGGCGTCCAAAGCCATCTTCTTCTTC-TTC-TT-T-GTCTCCGCCGTGTGCCTGTCC 148
Query 158 TCTCTGGCAGGTTTCGCCGCCGCTGATGCTGACGACTTCGATCGTTTCCAGATTCAAGGA 217
||||| || || | ||| |||||| || || ||||| || |||||||| |||||||||
Sbjct 149 TCTCTCGCCGGCGTGGCCATCGCTGACGCCGATGACTTTGACCGTTTCCAAATTCAAGGA 208
Query 218 TCAGTTTACTGTGACACTTGCCGTGTCCAATTCGTTACCCGTCTCAGCAAATTCCTCGAA 277
|| ||||| |||||||| ||||||||||||||||||||||| |||||||| ||||| |||
Sbjct 209 TCGGTTTATTGTGACACATGCCGTGTCCAATTCGTTACCCGCCTCAGCAAGTTCCTTGAA 268
Query 278 GGCGCGAAAGTGAAGTTGGAGTGCAGGAGCAGAACAAACGGAACCATAACATTGACCAAA 337
|| |||||||||||| | ||||||||||||||||||||||||||| |||||||||| |||
Sbjct 269 GGAGCGAAAGTGAAGCTAGAGTGCAGGAGCAGAACAAACGGAACCGTAACATTGACAAAA 328
Query 338 GAAGCTGTTACCGACAAAACAGGAAGCTACAAAATGGAAGTAACCGGTGACCACGAGGAA 397
||||| || || ||||||||||| ||||||| ||||||||| |||||||||||||||||
Sbjct 329 GAAGCCGTCACGGACAAAACAGGGAGCTACAGAATGGAAGTGACCGGTGACCACGAGGAG 388
Query 398 GAAGTTTGCGAGCTTGTTTTGGTCCAATCACCAGACAGTGGTTGCAGTGATGTCAGCACA 457
||||||||||||||||| | ||| ||||||||||||||||||||||||| || |||| |
Sbjct 389 GAAGTTTGCGAGCTTGTGCTCGTCGAATCACCAGACAGTGGTTGCAGTGACGTTAGCAAA 448
Query 458 GAGGCTTACTTACGTAACGCCGCTAAGATCAGTTTAACGGCGAATGACGGAATCGTCTCC 517
||||||||| |||||||||| ||||||||||| || || |||||||| |||||||||||
Sbjct 449 GAGGCTTACCTACGTAACGCTGCTAAGATCAGCTTGACCGCGAATGATGGAATCGTCTCT 508
Query 518 CACGAGACACGTATTGTTAACCCTCTCGGTTTCATGGTTCAGACTCCATTGGCTGATTGT 577
||||||||||||||||||||||||||||| ||||||||| |||| || | |||| |||
Sbjct 509 CACGAGACACGTATTGTTAACCCTCTCGGCTTCATGGTTAAGACGCCGTCACCTGAATGT 568
Query 578 CCTGCTGC-TTTCAAGGAGCTTGGTATTGTCCCTGACGTAACATTCTAA 625
|| ||||| ||| |||||||| || || || ||||| || || ||||||
Sbjct 569 CCCGCTGCCTTT-AAGGAGCTCGGAATCGTTCCTGATGTCACCTTCTAA 616
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33166937790
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5