BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G45890.1
Length=1253
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494390 jgi|Araly1|494390|fgenesh2_kg.8__206__AT5G45890.1 1801 0.0
> Ahg494390 jgi|Araly1|494390|fgenesh2_kg.8__206__AT5G45890.1
Length=1167
Score = 1801 bits (975), Expect = 0.0
Identities = 1107/1171 (95%), Gaps = 7/1171 (1%)
Strand=Plus/Plus
Query 22 CATTTAACTTTCCTAAAACAATGGCTTTAAAACATATGCAAATCTTTCTCTTCGTCGCTA 81
|||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
Sbjct 1 CATTTAACTTTCCTAAAACAATGGCTTTTAAACATATGCAAATCTTTCTTTTCGTCGCCA 60
Query 82 TATTTTCATCATTCTGTTTCTCCATCACTCTTTCTCGTCCACTCGACAATGAACTCATCA 141
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 61 TATTTTCATCATTCTATTTCTCCATCTCTCTTTCTCGTCCACTCGACAATGAACTCATCA 120
Query 142 TGCAAAAGAGGCACATCGAGTGGATGACTAAACACGGCCGTGTCTACGCGGATGTGAAGG 201
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 121 TGCAAAAGAGGCACATCGAGTGGATGACTAAACACGGCCGTGTCTACGCGGATGTGAAAG 180
Query 202 AGGAAAA-CAATCGCTACGTTGTGTTCAAAAACAACGTCGAACGCATTGAACATTTAAAT 260
|| |||| ||||||||||||||||||||||| |||||||||||| ||||||||||| |||
Sbjct 181 AG-AAAAGCAATCGCTACGTTGTGTTCAAAAGCAACGTCGAACGTATTGAACATTTGAAT 239
Query 261 AGCATTCCTGCCGGAAGAACTTTCAAACTTGCGGTAAATCAGTTTGCTGATTTAACCAAT 320
| |||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 240 AACATTCCCGCCGGAAGAACATTCAAACTTGCGGTAAATCAGTTTGCGGATTTAACCAAT 299
Query 321 GACGAATTTCGTTCCATGTACACTGGTTTCAAAGGTGTCTCGGCATTATCTAGCCAAAGC 380
|||||||| || || |||||||||||||||||||| |||||| || | ||||||||||||
Sbjct 300 GACGAATTCCGCTCTATGTACACTGGTTTCAAAGGAGTCTCGTCACTCTCTAGCCAAAGC 359
Query 381 CAAACTAAAATGTCGCCGTTTAGGTACCAAAACGTTTCTTCTGGTGCTTTGCCGGTTTCT 440
|||||||||| | | |||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 360 CAAACTAAAACGACTTCGTTTAGGTACCAAAACGTTTCTTCTAGTGCTTTGCCGATTTCT 419
Query 441 GTTGACTGGAGGAAGAAAGGAGCTGTGACCCCTATCAAGAATCAAGGCAGCTGCGGATGT 500
||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 420 GTTGACTGGAGGACGAAAGGAGCTGTGACCCCTATCAAGAATCAAGGCAGTTGCGGATGT 479
Query 501 TGTTGGGCGTTTTCAGCGGTTGCGGCTATTGAAGGAGCAACACAAATAAAGAAAGGGAAA 560
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 480 TGTTGGGCGTTTTCAGCGGTTGCGGCTATTGAAGGAGCAACACAGATAAAGAAAGGGAAA 539
Query 561 CTTATATCTTTGTCAGAACAACAGCTTGTTGATTGCGACACAAACGATTTTGGCTGCGAA 620
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 540 CTTATATCTTTGTCTGAACAACAGCTTGTCGATTGCGACACAAACGATTTTGGCTGCGAA 599
Query 621 GGCGGTTTAATGGATACTGCGTTTGAGCATATAAAAGCGACTGGCGGCTTGACAACTGAG 680
|||||||||||||||||||||||||||||||||| || || |||||||||||||||||
Sbjct 600 GGCGGTTTAATGGATACTGCGTTTGAGCATATAATGGCTACCGGCGGCTTGACAACTGAA 659
Query 681 TCAAATTATCCTTACAAAGGCGAAGACGCTACTTGCAATTCCAAAAAGACCAATCCAAAA 740
|||||||||||||||||||||||||||||||||||||||||||||||||| || || |||
Sbjct 660 TCAAATTATCCTTACAAAGGCGAAGACGCTACTTGCAATTCCAAAAAGACTAACCCGAAA 719
Query 741 GCAACTTCTATTACAGGTTATGAGGATGTCCCGGTTAATGATGAGCAAGCACTGATGAAG 800
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 720 GCAACTTCTATTACAGGTTATGAGGATGTCCCGGTTAACGACGAGCAAGCACTGATGAAG 779
Query 801 GCAGTGGCACACCAACCGGTTAGCGTTGGAATTGAAGGAGGTGGTTTTGATTTCCAATTC 860
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 780 GCAGTGGCACACCAACCAGTTAGCGTTGGAATTGAAGGTGGTGGTTTTGATTTCCAATTT 839
Query 861 TATTCGTCTGGTGTGTTCACTGGAGAGTGCACTACGTATCTTGATCATGCAGTAACTGCG 920
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 840 TATTCGTCTGGTGTGTTCACTGGAGAGTGCACTACGTATCTTGATCATGCGGTAACTGCC 899
Query 921 ATTGGATACGGCGAATCTACTAACGGATCAAAGTATTGGATCATCAAGAATTCATGGGGA 980
|||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 900 ATTGGATACGGCCAATCGACTAACGGATCAAAGTATTGGATCATCAAGAATTCTTGGGGA 959
Query 981 ACAAAATGGGGAGAAAGTGGATATATGAGGATTCAAAAAGATGTCAAGGATAAACAAGGA 1040
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 960 ACAAAATGGGGAGAAAGTGGATATATGAGGATTCAAAAAGATATCAAGGATAAACAAGGA 1019
Query 1041 CTATGTGGTCTTGCCATGAAAGCTTCTTACCCAACTATATGA-ATTCAAAACCGTGTTAA 1099
|||||||||||||||||||||||||||||||| ||||||||| || |||||||| |||||
Sbjct 1020 CTATGTGGTCTTGCCATGAAAGCTTCTTACCCTACTATATGATAT-CAAAACCGGGTTAA 1078
Query 1100 GCTTTTAATTGTGTATGTTTGTGTGGGATTGATGTCTAAAAATAATTTGAATTGTTTTAT 1159
||||||||||||||||||||||||||||| ||||| ||||||||||||||| || | ||
Sbjct 1079 ACTTTTAATTGTGTATGTTTGTGTGGGATTTATGTC-AAAAATAATTTGAATAGTAT-AT 1136
Query 1160 GTaaaaaaa-TTGTATTTAGACTGTTGTATG 1189
| ||||||| |||||||||||||||||||||
Sbjct 1137 GCAAAAAAAATTGTATTTAGACTGTTGTATG 1167
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46814942076
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5