BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G45900.1 Length=2300 Score E Sequences producing significant alignments: (Bits) Value Ahg948371 jgi|Araly1|948371|scaffold_800258.1 3552 0.0 Ahg950765 jgi|Araly1|950765|scaffold_802652.1 204 3e-51 > Ahg948371 jgi|Araly1|948371|scaffold_800258.1 Length=2139 Score = 3552 bits (1923), Expect = 0.0 Identities = 2068/2140 (97%), Gaps = 2/2140 (0%) Strand=Plus/Plus Query 59 TCTCTCAGAAAGATAAGATCAGCCATGGCTGAGAAAGAAACTCCAGCAATCATACTTCAA 118 ||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||| Sbjct 1 TCTCTCAGAGAGATAAGATCAGCCATGGCTGAGAAGGAAACTCCACCAATCATACTTCAA 60 Query 119 TTCGCTCCATTGAACAGTTCCGTCGACGAAGGTTTCTGGCATAGCTTCTCCTCTTTGAAA 178 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 61 TTCGCTCCATTGAACAGTTCCGTCGACGAAGGTTTCTGGCATAGCTTCTCCTCCTTGAAA 120 Query 179 CTCGACAAACTCGGAATCGATGATTCTCCGATTTCAATCACCGGTTTCTATGGACCATGT 238 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 121 CTCGACAAACTCGGAATCGATGATTCTCCGATTTCAATCACCGGTTTCTCTGGACCATGT 180 Query 239 GGACATCCACAAGTCTCAAATCATTTGACTCTTTTATCAGAGTCATTGCCTTTAGATGAA 298 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 TCACATCCACAAGTCTCAAATCATTTGACTCTTTTATCAGAGTCATTGCCTTTAGATGAA 240 Query 299 CAATCATTGATTGCTAGTACTAGTCATGGAAATAGGAATAAGTGTCCTGTTCCTGGGATT 358 |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| Sbjct 241 GAATCATTGATTGGGAGTACTAGCCATGGAAATAGGAATAAGTGTCCTGTTCCTGGGATT 300 Query 359 TTGTATAACACCAATACCGTTGAAAGCTTCAATAAACTTGACAAACAAAGTCTGCTAAAA 418 |||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||| Sbjct 301 TTGTATAACACCAATACCGTCGAAAGCTTTAATAAACTTGACAAACAAAGTCTGTTAAAA 360 Query 419 GCAGAAGCAAATAAGATTTGGGAGGATATTCAATCAGGAAAAGCTCTTGAAGACCCTTCT 478 ||||||||||| ||||||||||||||||| |||||||||||||||||||| ||| ||||| Sbjct 361 GCAGAAGCAAAGAAGATTTGGGAGGATATACAATCAGGAAAAGCTCTTGAGGACTCTTCT 420 Query 479 GTGTTACCAAGATTCCTCGTTATCTCCTTTGCAGACCTTAAGAAATGGAGTTTTCGGTAT 538 |||||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||| Sbjct 421 GTGTTATCAAGATTCCTTGTTATCTCCTTTGCAGACCTTAAGAAATGGAGTTTTCGTTAT 480 Query 539 TGGTTTGCGTTCCCTGCGTTTGTACTTGATCCTCCTGTAAGTTTGATTGAATTAAAGCCA 598 ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| Sbjct 481 TGGTTTGCGTTCCCTGCACTTGTACTTGATCCTCCTGTAAGTTTGATAGAATTAAAGCCA 540 Query 599 GCTTCAGAGTATTTTAGTTCTGAAGAGGCTGAATCAGTATCCGCTGCTTGTAATGATTGG 658 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 541 GCTTCAGAGTATTTTAGTTCTGAAGAGGCGGAATCAGTATCCGCTGCTTGTAATGATTGG 600 Query 659 CGCGACTCAGATTTAACTACTGATGTTCCATTCTTTTTGGTTTCGGTTTCTTCTGATTCA 718 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 601 CGCGACTCAGATTTAACTACTGATGTTCCATTCTTTTTGGTTTCGTTTTCTTCTGATTCA 660 Query 719 AAAGCTAGTATCAGACATCTTAAAGACTTGGAAGCGTGCCAAGGTGATCATCAAAAGTTG 778 |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| Sbjct 661 AAAGCTAGTATCAGACATCTTAAAGACTGGGAAGCGTGCCAAGGTGATCGTCAAAAGTTG 720 Query 779 CTTTTCGGTTTCTATGACCCGTGTCACCTTCCTAGTAATCCTGGCTGGCCACTTCGAAAC 838 |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| Sbjct 721 CTTTTCGGTTTCTATGACCCATGTCACCTTCCTAGTAATCCTGGCTGGCCATTTCGAAAT 780 Query 839 TACTTGGCACTGATTCGCTCAAGATGGAACCTCGAGACAGTTTGGTTCTTCTGCTACAGA 898 || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 781 TATTTGGCACTGATTCGCTCAAGATGGAACCTTGAGACAGTTTGGTTCTTCTGCTACAGA 840 Query 899 GAGAGTCGTGGTTTCGCTGACTTGAACCTTTCTCTTGTTGGTCAAGCCTCAATTACACTT 958 |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| Sbjct 841 GAGAGTCGTGGTTTCGCTGACTTGAACCTTTCCCTTGTTGGTCAAGCCTCAGTTACACTT 900 Query 959 TCATCAGGTGAATCAGCTGAGACTGTACCTAACTCAGTGGGATGGGAGCTTAACAAAGGG 1018 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 901 TCATCAGGTGAATCAGCTGAGACTGTACCTAACTCAGTGGGATGGGAGCTTAACAAAGGG 960 Query 1019 AAACGTGTACCCCGATCCATTAGCCTTGCTAATTCCATGGATCCAACAAGGTTGGCTGTT 1078 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 961 AAACGTGTACCCCGATCCATTAGCCTTGCTAATTCCATGGATCCAACAAGGTTGGCTGTT 1020 Query 1079 TCTGCTGTCGATTTAAACTTAAAGTTAATGAGATGGCGAGCATTACCGTCTCTTAACTTA 1138 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1021 TCTGCTGTTGATTTAAACTTAAAGTTAATGAGATGGCGAGCATTACCGTCTCTTAACTTA 1080 Query 1139 AATGTATTGTCCTCTGTCAAATGCCTTCTTCTTGGAGCTGGTACATTGGGTTGCCAAGTT 1198 || || ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1081 AACGTTTTGTCCTCTGTCAAATGCCTTCTTCTTGGAGCTGGTACATTGGGTTGCCAAGTG 1140 Query 1199 GCTCGTACCCTTATGGGTTGGGGAATCCGCAATATCACCTTTGTTGACTATGGAAAAGTT 1258 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1141 GCTCGTACCCTTATGGGTTGGGGAATCCGCAATATCACCTTTGTTGACTATGGCAAAGTA 1200 Query 1259 GCCATGTCTAATCCAGTCAGGCAATCTCTCTATAATTTTGAAGATTGTCTAGGTCGTGGT 1318 || ||||||||||||||||||||||||||||| | |||||||||||| |||| || || Sbjct 1201 GCTATGTCTAATCCAGTCAGGCAATCTCTCTACACGTTTGAAGATTGTGTAGGCCGAGGC 1260 Query 1319 GAGTTTAAAGCTGTTGCTGCTGTTAAAAGCCTTAAACAGATATTTCCAGCAATGGAAACT 1378 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1261 GAGTTTAAAGCTGTTGCTGCTGTTAAAAGCCTTAAACAGATATTTCCAGCAATGGAAACT 1320 Query 1379 AGTGGAGTTGTTATGGCTATACCGATGCCCGGACATCCGATTTCTAGCCAAGAAGAAGAT 1438 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1321 AGTGGAGTTGTTATGGCTATACCGATGCCCGGTCATCCGATTTCTAGCCAAGAAGAAGAT 1380 Query 1439 TCTGTTCTCGGTGATTGTAAACGCCTTAGCGAGT-TGATTGAATCTCATGATGCGGTGTT 1497 |||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||| Sbjct 1381 TCTGTTCTCGGTGATTGTAAACGCCTTAGCGA-TCTGATTGAATCTCATGATGCCGTGTT 1439 Query 1498 CTTGTTAACCGATACAAGAGAAAGCAGGTGGTTACCGTCTCTTCTTTGTGCTAATGCCAA 1557 ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| Sbjct 1440 CTTGTTAACCGATACAAGAGAAAGCCGGTGGTTACCTTCTCTTCTTTGTGCTAATGCCAA 1499 Query 1558 TAAGATCGCTATAAACGCGGCTTTAGGTTTTGACAGCTACATGGTAATGCGCCATGGTGC 1617 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1500 TAAGATCGCTATAAACGCGGCTTTAGGTTTTGACAGCTACATGGTAATGCGCCATGGCGC 1559 Query 1618 TGGCCCCACCTCTCTGTCTGATGATATGCAGAATCTTGACATAAACAAGACAAATACACA 1677 ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1560 TGGCCCCACTTCCCTGTCTGATGATATGCAGAATCTTGACATAAACAAGACAAATACACA 1619 Query 1678 GAGACTTGGTTGTTACTTCTGCAACGACGTGGTTGCACCTCAGGATTCAATGACTGATCG 1737 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1620 GAGACTTGGTTGTTACTTCTGCAACGACGTGGTTGCACCTCAGGATTCAATGACTGATCG 1679 Query 1738 AACTCTAGACCAACAATGCACTGTTACACGCCCGGGTCTAGCTCCTATTGCAGGAGCTCT 1797 |||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||| Sbjct 1680 AACTCTAGACCAACAATGTACTGTTACACGCCCGGGTCTTGCTCCTATAGCAGGAGCTCT 1739 Query 1798 CGCCGTTGAACTCTTAGTCGGAGTCCTACAACACCCACTTGGTATCAATGCAAAAGGCGA 1857 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1740 CGCCGTTGAACTCTTAGTCGGAGTCCTACAACACCCACTTGTTATCAATGCAAAAGGCGA 1799 Query 1858 CAATTCGAGCTTGAGTAATACAGGAAACAATGATGATTCGCCTCTCGGGATATTACCTCA 1917 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1800 CAATTCGAGCTTGAGTAATACAGGAAACAATGATGATTCGCCTCTCGGGATATTACCTCA 1859 Query 1918 TCAGATACGAGGCTCAGTTTCTCAGTTCTCACAGATCACGCTGCTTGGTCAAGCTTCCAA 1977 |||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||| Sbjct 1860 TCAGATTCGAGGCTCAGTTTCTCAGTTCTCACAGATCACACTGCTTGGGCAAGCTTCCAA 1919 Query 1978 CAGCTGTACCGCTTGCTCTGAAACCGTGATATCGGAGTATAGGGAGAGAGGAAACAGTTT 2037 |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct 1920 CAGCTGTACCGCTTGCTCTGAAACCGTGATATCGGAGTATCGGAAGAGAGGAAACAGTTT 1979 Query 2038 CATACTTGAAGCTATTAACCATCCTACATACCTGGAGGATCTTACTGGTTTAACCGAGCT 2097 ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| Sbjct 1980 CATACTTGAAGCTATTAACCATCCTACATACCTGGAGGATCTTACCGGCTTAACCGAGCT 2039 Query 2098 TAAGAAAGCTGCTAATTCATTCAACCTCGACTGGGAAGACGATGATACTGATGATGACGA 2157 |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 2040 AAAGAAAGCTGCTAATTCATTTAACCTCGACTGGGAAGACGATGATACTGATGATGACGA 2099 Query 2158 TGTAGCTGTAGATCTTTAAAGACAGATTTATGTATCAAAT 2197 ||||||||||||||||||||||||||| |||||||||||| Sbjct 2100 TGTAGCTGTAGATCTTTAAAGACAGATATATGTATCAAAT 2139 > Ahg950765 jgi|Araly1|950765|scaffold_802652.1 Length=398 Score = 204 bits (110), Expect = 3e-51 Identities = 142/157 (90%), Gaps = 3/157 (2%) Strand=Plus/Plus Query 69 AGA-TAAGATC-AGCCA-TGGCTGAGAAAGAAACTCCAGCAATCATACTTCAATTCGCTC 125 ||| ||||||| | || |||||||||| ||||| ||| ||||| ||||||||||||||| Sbjct 140 AGAGTAAGATCGGGGCATTGGCTGAGAAGGAAACCCCACCAATCGTACTTCAATTCGCTC 199 Query 126 CATTGAACAGTTCCGTCGACGAAGGTTTCTGGCATAGCTTCTCCTCTTTGAAACTCGACA 185 ||||||||||||||||| |||||||||||||| |||||||||| ||||||||||| || | Sbjct 200 CATTGAACAGTTCCGTCTACGAAGGTTTCTGGTATAGCTTCTCGTCTTTGAAACTTGATA 259 Query 186 AACTCGGAATCGATGATTCTCCGATTTCAATCACCGG 222 |||||||||||||||||||||||||| |||||||||| Sbjct 260 AACTCGGAATCGATGATTCTCCGATTCCAATCACCGG 296 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 86617217130 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5