BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G45900.1
Length=2300
Score E
Sequences producing significant alignments: (Bits) Value
Ahg948371 jgi|Araly1|948371|scaffold_800258.1 3552 0.0
Ahg950765 jgi|Araly1|950765|scaffold_802652.1 204 3e-51
> Ahg948371 jgi|Araly1|948371|scaffold_800258.1
Length=2139
Score = 3552 bits (1923), Expect = 0.0
Identities = 2068/2140 (97%), Gaps = 2/2140 (0%)
Strand=Plus/Plus
Query 59 TCTCTCAGAAAGATAAGATCAGCCATGGCTGAGAAAGAAACTCCAGCAATCATACTTCAA 118
||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 1 TCTCTCAGAGAGATAAGATCAGCCATGGCTGAGAAGGAAACTCCACCAATCATACTTCAA 60
Query 119 TTCGCTCCATTGAACAGTTCCGTCGACGAAGGTTTCTGGCATAGCTTCTCCTCTTTGAAA 178
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 TTCGCTCCATTGAACAGTTCCGTCGACGAAGGTTTCTGGCATAGCTTCTCCTCCTTGAAA 120
Query 179 CTCGACAAACTCGGAATCGATGATTCTCCGATTTCAATCACCGGTTTCTATGGACCATGT 238
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 121 CTCGACAAACTCGGAATCGATGATTCTCCGATTTCAATCACCGGTTTCTCTGGACCATGT 180
Query 239 GGACATCCACAAGTCTCAAATCATTTGACTCTTTTATCAGAGTCATTGCCTTTAGATGAA 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TCACATCCACAAGTCTCAAATCATTTGACTCTTTTATCAGAGTCATTGCCTTTAGATGAA 240
Query 299 CAATCATTGATTGCTAGTACTAGTCATGGAAATAGGAATAAGTGTCCTGTTCCTGGGATT 358
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 241 GAATCATTGATTGGGAGTACTAGCCATGGAAATAGGAATAAGTGTCCTGTTCCTGGGATT 300
Query 359 TTGTATAACACCAATACCGTTGAAAGCTTCAATAAACTTGACAAACAAAGTCTGCTAAAA 418
|||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||
Sbjct 301 TTGTATAACACCAATACCGTCGAAAGCTTTAATAAACTTGACAAACAAAGTCTGTTAAAA 360
Query 419 GCAGAAGCAAATAAGATTTGGGAGGATATTCAATCAGGAAAAGCTCTTGAAGACCCTTCT 478
||||||||||| ||||||||||||||||| |||||||||||||||||||| ||| |||||
Sbjct 361 GCAGAAGCAAAGAAGATTTGGGAGGATATACAATCAGGAAAAGCTCTTGAGGACTCTTCT 420
Query 479 GTGTTACCAAGATTCCTCGTTATCTCCTTTGCAGACCTTAAGAAATGGAGTTTTCGGTAT 538
|||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 421 GTGTTATCAAGATTCCTTGTTATCTCCTTTGCAGACCTTAAGAAATGGAGTTTTCGTTAT 480
Query 539 TGGTTTGCGTTCCCTGCGTTTGTACTTGATCCTCCTGTAAGTTTGATTGAATTAAAGCCA 598
||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 481 TGGTTTGCGTTCCCTGCACTTGTACTTGATCCTCCTGTAAGTTTGATAGAATTAAAGCCA 540
Query 599 GCTTCAGAGTATTTTAGTTCTGAAGAGGCTGAATCAGTATCCGCTGCTTGTAATGATTGG 658
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 541 GCTTCAGAGTATTTTAGTTCTGAAGAGGCGGAATCAGTATCCGCTGCTTGTAATGATTGG 600
Query 659 CGCGACTCAGATTTAACTACTGATGTTCCATTCTTTTTGGTTTCGGTTTCTTCTGATTCA 718
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 601 CGCGACTCAGATTTAACTACTGATGTTCCATTCTTTTTGGTTTCGTTTTCTTCTGATTCA 660
Query 719 AAAGCTAGTATCAGACATCTTAAAGACTTGGAAGCGTGCCAAGGTGATCATCAAAAGTTG 778
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 661 AAAGCTAGTATCAGACATCTTAAAGACTGGGAAGCGTGCCAAGGTGATCGTCAAAAGTTG 720
Query 779 CTTTTCGGTTTCTATGACCCGTGTCACCTTCCTAGTAATCCTGGCTGGCCACTTCGAAAC 838
|||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 721 CTTTTCGGTTTCTATGACCCATGTCACCTTCCTAGTAATCCTGGCTGGCCATTTCGAAAT 780
Query 839 TACTTGGCACTGATTCGCTCAAGATGGAACCTCGAGACAGTTTGGTTCTTCTGCTACAGA 898
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 781 TATTTGGCACTGATTCGCTCAAGATGGAACCTTGAGACAGTTTGGTTCTTCTGCTACAGA 840
Query 899 GAGAGTCGTGGTTTCGCTGACTTGAACCTTTCTCTTGTTGGTCAAGCCTCAATTACACTT 958
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 841 GAGAGTCGTGGTTTCGCTGACTTGAACCTTTCCCTTGTTGGTCAAGCCTCAGTTACACTT 900
Query 959 TCATCAGGTGAATCAGCTGAGACTGTACCTAACTCAGTGGGATGGGAGCTTAACAAAGGG 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 TCATCAGGTGAATCAGCTGAGACTGTACCTAACTCAGTGGGATGGGAGCTTAACAAAGGG 960
Query 1019 AAACGTGTACCCCGATCCATTAGCCTTGCTAATTCCATGGATCCAACAAGGTTGGCTGTT 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 AAACGTGTACCCCGATCCATTAGCCTTGCTAATTCCATGGATCCAACAAGGTTGGCTGTT 1020
Query 1079 TCTGCTGTCGATTTAAACTTAAAGTTAATGAGATGGCGAGCATTACCGTCTCTTAACTTA 1138
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 TCTGCTGTTGATTTAAACTTAAAGTTAATGAGATGGCGAGCATTACCGTCTCTTAACTTA 1080
Query 1139 AATGTATTGTCCTCTGTCAAATGCCTTCTTCTTGGAGCTGGTACATTGGGTTGCCAAGTT 1198
|| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 AACGTTTTGTCCTCTGTCAAATGCCTTCTTCTTGGAGCTGGTACATTGGGTTGCCAAGTG 1140
Query 1199 GCTCGTACCCTTATGGGTTGGGGAATCCGCAATATCACCTTTGTTGACTATGGAAAAGTT 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1141 GCTCGTACCCTTATGGGTTGGGGAATCCGCAATATCACCTTTGTTGACTATGGCAAAGTA 1200
Query 1259 GCCATGTCTAATCCAGTCAGGCAATCTCTCTATAATTTTGAAGATTGTCTAGGTCGTGGT 1318
|| ||||||||||||||||||||||||||||| | |||||||||||| |||| || ||
Sbjct 1201 GCTATGTCTAATCCAGTCAGGCAATCTCTCTACACGTTTGAAGATTGTGTAGGCCGAGGC 1260
Query 1319 GAGTTTAAAGCTGTTGCTGCTGTTAAAAGCCTTAAACAGATATTTCCAGCAATGGAAACT 1378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 GAGTTTAAAGCTGTTGCTGCTGTTAAAAGCCTTAAACAGATATTTCCAGCAATGGAAACT 1320
Query 1379 AGTGGAGTTGTTATGGCTATACCGATGCCCGGACATCCGATTTCTAGCCAAGAAGAAGAT 1438
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1321 AGTGGAGTTGTTATGGCTATACCGATGCCCGGTCATCCGATTTCTAGCCAAGAAGAAGAT 1380
Query 1439 TCTGTTCTCGGTGATTGTAAACGCCTTAGCGAGT-TGATTGAATCTCATGATGCGGTGTT 1497
|||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||
Sbjct 1381 TCTGTTCTCGGTGATTGTAAACGCCTTAGCGA-TCTGATTGAATCTCATGATGCCGTGTT 1439
Query 1498 CTTGTTAACCGATACAAGAGAAAGCAGGTGGTTACCGTCTCTTCTTTGTGCTAATGCCAA 1557
||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 1440 CTTGTTAACCGATACAAGAGAAAGCCGGTGGTTACCTTCTCTTCTTTGTGCTAATGCCAA 1499
Query 1558 TAAGATCGCTATAAACGCGGCTTTAGGTTTTGACAGCTACATGGTAATGCGCCATGGTGC 1617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1500 TAAGATCGCTATAAACGCGGCTTTAGGTTTTGACAGCTACATGGTAATGCGCCATGGCGC 1559
Query 1618 TGGCCCCACCTCTCTGTCTGATGATATGCAGAATCTTGACATAAACAAGACAAATACACA 1677
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1560 TGGCCCCACTTCCCTGTCTGATGATATGCAGAATCTTGACATAAACAAGACAAATACACA 1619
Query 1678 GAGACTTGGTTGTTACTTCTGCAACGACGTGGTTGCACCTCAGGATTCAATGACTGATCG 1737
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1620 GAGACTTGGTTGTTACTTCTGCAACGACGTGGTTGCACCTCAGGATTCAATGACTGATCG 1679
Query 1738 AACTCTAGACCAACAATGCACTGTTACACGCCCGGGTCTAGCTCCTATTGCAGGAGCTCT 1797
|||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||
Sbjct 1680 AACTCTAGACCAACAATGTACTGTTACACGCCCGGGTCTTGCTCCTATAGCAGGAGCTCT 1739
Query 1798 CGCCGTTGAACTCTTAGTCGGAGTCCTACAACACCCACTTGGTATCAATGCAAAAGGCGA 1857
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1740 CGCCGTTGAACTCTTAGTCGGAGTCCTACAACACCCACTTGTTATCAATGCAAAAGGCGA 1799
Query 1858 CAATTCGAGCTTGAGTAATACAGGAAACAATGATGATTCGCCTCTCGGGATATTACCTCA 1917
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1800 CAATTCGAGCTTGAGTAATACAGGAAACAATGATGATTCGCCTCTCGGGATATTACCTCA 1859
Query 1918 TCAGATACGAGGCTCAGTTTCTCAGTTCTCACAGATCACGCTGCTTGGTCAAGCTTCCAA 1977
|||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 1860 TCAGATTCGAGGCTCAGTTTCTCAGTTCTCACAGATCACACTGCTTGGGCAAGCTTCCAA 1919
Query 1978 CAGCTGTACCGCTTGCTCTGAAACCGTGATATCGGAGTATAGGGAGAGAGGAAACAGTTT 2037
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1920 CAGCTGTACCGCTTGCTCTGAAACCGTGATATCGGAGTATCGGAAGAGAGGAAACAGTTT 1979
Query 2038 CATACTTGAAGCTATTAACCATCCTACATACCTGGAGGATCTTACTGGTTTAACCGAGCT 2097
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1980 CATACTTGAAGCTATTAACCATCCTACATACCTGGAGGATCTTACCGGCTTAACCGAGCT 2039
Query 2098 TAAGAAAGCTGCTAATTCATTCAACCTCGACTGGGAAGACGATGATACTGATGATGACGA 2157
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2040 AAAGAAAGCTGCTAATTCATTTAACCTCGACTGGGAAGACGATGATACTGATGATGACGA 2099
Query 2158 TGTAGCTGTAGATCTTTAAAGACAGATTTATGTATCAAAT 2197
||||||||||||||||||||||||||| ||||||||||||
Sbjct 2100 TGTAGCTGTAGATCTTTAAAGACAGATATATGTATCAAAT 2139
> Ahg950765 jgi|Araly1|950765|scaffold_802652.1
Length=398
Score = 204 bits (110), Expect = 3e-51
Identities = 142/157 (90%), Gaps = 3/157 (2%)
Strand=Plus/Plus
Query 69 AGA-TAAGATC-AGCCA-TGGCTGAGAAAGAAACTCCAGCAATCATACTTCAATTCGCTC 125
||| ||||||| | || |||||||||| ||||| ||| ||||| |||||||||||||||
Sbjct 140 AGAGTAAGATCGGGGCATTGGCTGAGAAGGAAACCCCACCAATCGTACTTCAATTCGCTC 199
Query 126 CATTGAACAGTTCCGTCGACGAAGGTTTCTGGCATAGCTTCTCCTCTTTGAAACTCGACA 185
||||||||||||||||| |||||||||||||| |||||||||| ||||||||||| || |
Sbjct 200 CATTGAACAGTTCCGTCTACGAAGGTTTCTGGTATAGCTTCTCGTCTTTGAAACTTGATA 259
Query 186 AACTCGGAATCGATGATTCTCCGATTTCAATCACCGG 222
|||||||||||||||||||||||||| ||||||||||
Sbjct 260 AACTCGGAATCGATGATTCTCCGATTCCAATCACCGG 296
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86617217130
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5