BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G45905.1

Length=216
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg948370 jgi|Araly1|948370|scaffold_800257.1                        307    2e-83


> Ahg948370 jgi|Araly1|948370|scaffold_800257.1
Length=268

 Score =  307 bits (166),  Expect = 2e-83
 Identities = 205/222 (92%), Gaps = 9/222 (4%)
 Strand=Plus/Plus

Query  4    ACTAAACTTATTCAACTCTCGTTCACCGTTTTAGCTATCTTCAGCATTTTCGTGCTTGGA  63
            |||||||  |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  27   ACTAAACACATTCAACTGTCGTTCACCGTTTTAGCTATCTTCAGCATTTTCGTGCTTGGA  86

Query  64   GTGGTCGAAAATGAGTATAAATGTTCGGAAATTCTGTTTCGAAAGAGTAAGTGTGATTAT  123
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  87   GTGGTCGGAAATGAGTATAAATGTTCGGAAATTCTGTTTCGAAAGAGTAAGTGTGATTAT  146

Query  124  CAAGAGTGTGGGTTGATGTGTGTTTTGAAGAGGCAGGGGTTGTCAAGTTGCTCTAATGAG  183
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||
Sbjct  147  CAAGAGTGTGGGTTGATGTGTGTTTTGAAGAGGCAGGGGTTGTCAAGTTGCACTAAACAG  206

Query  184  GGCA--T-----AT--GTTCTTGCCAGTATCAATGCCCTTAA  216
            || |  |     ||  ||||||||||||||||||||||||||
Sbjct  207  GGGAGATTTTTTATATGTTCTTGCCAGTATCAATGCCCTTAA  248



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 7370334373


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5