BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G45905.1 Length=216 Score E Sequences producing significant alignments: (Bits) Value Ahg948370 jgi|Araly1|948370|scaffold_800257.1 307 2e-83 > Ahg948370 jgi|Araly1|948370|scaffold_800257.1 Length=268 Score = 307 bits (166), Expect = 2e-83 Identities = 205/222 (92%), Gaps = 9/222 (4%) Strand=Plus/Plus Query 4 ACTAAACTTATTCAACTCTCGTTCACCGTTTTAGCTATCTTCAGCATTTTCGTGCTTGGA 63 ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 27 ACTAAACACATTCAACTGTCGTTCACCGTTTTAGCTATCTTCAGCATTTTCGTGCTTGGA 86 Query 64 GTGGTCGAAAATGAGTATAAATGTTCGGAAATTCTGTTTCGAAAGAGTAAGTGTGATTAT 123 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 87 GTGGTCGGAAATGAGTATAAATGTTCGGAAATTCTGTTTCGAAAGAGTAAGTGTGATTAT 146 Query 124 CAAGAGTGTGGGTTGATGTGTGTTTTGAAGAGGCAGGGGTTGTCAAGTTGCTCTAATGAG 183 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || Sbjct 147 CAAGAGTGTGGGTTGATGTGTGTTTTGAAGAGGCAGGGGTTGTCAAGTTGCACTAAACAG 206 Query 184 GGCA--T-----AT--GTTCTTGCCAGTATCAATGCCCTTAA 216 || | | || |||||||||||||||||||||||||| Sbjct 207 GGGAGATTTTTTATATGTTCTTGCCAGTATCAATGCCCTTAA 248 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 7370334373 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5