BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G45910.1
Length=1277
Score E
Sequences producing significant alignments: (Bits) Value
Ahg948369 jgi|Araly1|948369|scaffold_800256.1 1857 0.0
> Ahg948369 jgi|Araly1|948369|scaffold_800256.1
Length=1167
Score = 1857 bits (1005), Expect = 0.0
Identities = 1117/1171 (95%), Gaps = 8/1171 (1%)
Strand=Plus/Plus
Query 16 aaaaaaaaaaaGAAATCATAAAATGAGAATCAATATGTTATTCATAGTGGCATTCTCATT 75
||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||| ||
Sbjct 1 AAAAAAAAAAAAAAATCATAGAATGAGAATCAATATGTTATTCATCGTGGCATTCTCTTT 60
Query 76 TTTAGTCTCTGTTCGGTCATTACCGATGAGACCAACTCTAAAGTACGAGTCAATCTTTAA 135
||||||||| ||||||||||||||||||| |||||||||||| ||||| |||||||||||
Sbjct 61 TTTAGTCTCCGTTCGGTCATTACCGATGAAACCAACTCTAAACTACGACTCAATCTTTAA 120
Query 136 TTTTGGCGATTCTTTAAGCGATACCGGAAACTTTTTATTATCCGGTGATGTTGACTCTCC 195
||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 121 TTTCGGCGATTCTTTAAGCGATACCGGAAACTTTTTAATATCCGGTGATGTCGACTCTCC 180
Query 196 GAACATTGGAAGACTACCGTACGGACAAACCTTTTTTAACCGTTCCACCGGTCGTTGCTC 255
|||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 181 GAACATTGGAAGACCACCATACGGACAAACCTTTTTTAACCGTTCTACCGGTCGTTGCTC 240
Query 256 TGACGGACGTCTCATCATCGATTTCATCGCTGAGGCTAGTGGACTACCGTACATTCCACC 315
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 241 CGACGGACGTCTCATCATCGATTTCATCGCTGAGGCAAGTGGACTGCCGTACATTCCACC 300
Query 316 GTATCTCCAAAGCTTACGGACGAATGATTCGGTAGATTTCAAGAGAGGTGCAAATTTTGC 375
|||||| |||||| | ||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 301 GTATCTTCAAAGCGTGCGGACGAATAATTCGGTAGATTTCAAGAGAGGAGCAAATTTTGC 360
Query 376 GGTGGCTGGAGCAACAGCGAACGAATTTAGCTTCTTTAAA-AACAGAGGTCTTTCAGTAA 434
|||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 361 GGTGGCCGGAGCAACAGCGAACGAATTTAGCTTCTTTAAAGAA-AGAGGTCTTTCAGTAA 419
Query 435 CATTGTTGACAAACAAGACACTGGATATTCAACTTGATTGGTTCAAGAAGTTGAAACCTT 494
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 420 CATTGTTGACAAACAAGACACTGGATATTCAACTTGGTTGGTTCAAGAAGTTGAAACCTT 479
Query 495 CTCTGTGTAAAACCAAGCCAGAATGTGAACAATATTTTAGAAAATCTCTATTTCTCGTTG 554
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 480 CTCTGTGTAAAACCAAGCCAGAATGTGAACAATATTTTAGAAAATCTCTATTTCTCGTCG 539
Query 555 GAGAAATTGGTGGAAACGATTATAACTACCCTCTTTTGGCATTCCGAAGTTTCAAACATG 614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GAGAAATTGGTGGAAACGATTATAACTACCCTCTTTTGGCATTCCGAAGTTTCAAACATG 599
Query 615 CTATGGATTTGGTACCATTTGTTATTAACAAAATCATGGACGTCACAAGTGCATTGATAG 674
|||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 600 CTATGGATTTGGTACCATTTGTCATTAACAAAATCATGAACGTCACAAGTGCATTGATAG 659
Query 675 AGGAAGGTGCCATGACACTAATAGTTCCAGGAAACCTTCCAATCGGTTGTTCTGCGGCTC 734
|||||||||| ||||||| || |||||||||||||||||||||||||||||||||| ||
Sbjct 660 AGGAAGGTGCGGTGACACTGATGGTTCCAGGAAACCTTCCAATCGGTTGTTCTGCGGTTC 719
Query 735 TACTAGAGCGGTTTAATGATAATAGTGGATGGCTTTATGACTCGAGGAACCAATGCTACA 794
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TACTAGAGCGGTTTAATGATAATAGTGGATGGCTTTATGACTCGAGGAACCAATGCTACA 779
Query 795 TGCCATTGAACAATTTGGCTAAGCTTCACAATGATAAGCTCAAGAAAGGCCTCGCGGCTC 854
|||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 780 AGCCATTGAACAATTTGGCTAAGCTTCACAACGATAAGCTCAAGAAAGGCCTTGCGGCTC 839
Query 855 TAAGAAAAAAGTACCCTTATGCCAAAATTATATATGCTGATTATTACAGTTCTGCCATGC 914
||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 840 TAAGAGAAAAGTACCCTCATGCCAAAATTATGTATGCTGATTATTACAGTTCTGCCATGC 899
Query 915 AATTCTTCAACTCACCTTCCAAATACGGTTTCACTGGAAGTGTCCTAAAGGCATGTTGTG 974
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 AATTCTTCAACTCACCTTCCAAATACGGTTTCACTGGAAGTGTCCTAAAGGCATGTTGTG 959
Query 975 GAGGAGGAGATGGAAGATACAACGTGCAACCAAACGTGCGGTGCGGAGAAAAGGGTTCAA 1034
|||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||
Sbjct 960 GAGGAGGAGATGGAAGATACAACGCGAAACCAAGCGTGCGGTGCGGAGAAAAGGGTTCAA 1019
Query 1035 CCACTTGCGAAGATCCATCAACGTACGCAAATTGGGACGGAATTCACCTCACTGAAGCGG 1094
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1020 CCACTTGCGAAAATCCATCAACGTACGCAAATTGGGACGGAATTCACCTAACTGAAGCGG 1079
Query 1095 CTTACCGCCACATTGCAACTGGTCTCATCTCCGGCCGTTTCACCATGCCTACTTATAATT 1154
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1080 CTTACCGCCACATTGCAACTGGTCTCATCTCCGGCCGTTTCACCATGCCTTCTTATGAT- 1138
Query 1155 AATAACAATTAAGTTA-CTCATAAGTTGTAA 1184
|| ||||||| ||| || |||||||||||
Sbjct 1139 AA---CAATTAA-TTAACTTATAAGTTGTAA 1165
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47729892084
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5