BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G45910.1 Length=1277 Score E Sequences producing significant alignments: (Bits) Value Ahg948369 jgi|Araly1|948369|scaffold_800256.1 1857 0.0 > Ahg948369 jgi|Araly1|948369|scaffold_800256.1 Length=1167 Score = 1857 bits (1005), Expect = 0.0 Identities = 1117/1171 (95%), Gaps = 8/1171 (1%) Strand=Plus/Plus Query 16 aaaaaaaaaaaGAAATCATAAAATGAGAATCAATATGTTATTCATAGTGGCATTCTCATT 75 ||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||| || Sbjct 1 AAAAAAAAAAAAAAATCATAGAATGAGAATCAATATGTTATTCATCGTGGCATTCTCTTT 60 Query 76 TTTAGTCTCTGTTCGGTCATTACCGATGAGACCAACTCTAAAGTACGAGTCAATCTTTAA 135 ||||||||| ||||||||||||||||||| |||||||||||| ||||| ||||||||||| Sbjct 61 TTTAGTCTCCGTTCGGTCATTACCGATGAAACCAACTCTAAACTACGACTCAATCTTTAA 120 Query 136 TTTTGGCGATTCTTTAAGCGATACCGGAAACTTTTTATTATCCGGTGATGTTGACTCTCC 195 ||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| Sbjct 121 TTTCGGCGATTCTTTAAGCGATACCGGAAACTTTTTAATATCCGGTGATGTCGACTCTCC 180 Query 196 GAACATTGGAAGACTACCGTACGGACAAACCTTTTTTAACCGTTCCACCGGTCGTTGCTC 255 |||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||| Sbjct 181 GAACATTGGAAGACCACCATACGGACAAACCTTTTTTAACCGTTCTACCGGTCGTTGCTC 240 Query 256 TGACGGACGTCTCATCATCGATTTCATCGCTGAGGCTAGTGGACTACCGTACATTCCACC 315 ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| Sbjct 241 CGACGGACGTCTCATCATCGATTTCATCGCTGAGGCAAGTGGACTGCCGTACATTCCACC 300 Query 316 GTATCTCCAAAGCTTACGGACGAATGATTCGGTAGATTTCAAGAGAGGTGCAAATTTTGC 375 |||||| |||||| | ||||||||| |||||||||||||||||||||| ||||||||||| Sbjct 301 GTATCTTCAAAGCGTGCGGACGAATAATTCGGTAGATTTCAAGAGAGGAGCAAATTTTGC 360 Query 376 GGTGGCTGGAGCAACAGCGAACGAATTTAGCTTCTTTAAA-AACAGAGGTCTTTCAGTAA 434 |||||| ||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct 361 GGTGGCCGGAGCAACAGCGAACGAATTTAGCTTCTTTAAAGAA-AGAGGTCTTTCAGTAA 419 Query 435 CATTGTTGACAAACAAGACACTGGATATTCAACTTGATTGGTTCAAGAAGTTGAAACCTT 494 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 420 CATTGTTGACAAACAAGACACTGGATATTCAACTTGGTTGGTTCAAGAAGTTGAAACCTT 479 Query 495 CTCTGTGTAAAACCAAGCCAGAATGTGAACAATATTTTAGAAAATCTCTATTTCTCGTTG 554 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 480 CTCTGTGTAAAACCAAGCCAGAATGTGAACAATATTTTAGAAAATCTCTATTTCTCGTCG 539 Query 555 GAGAAATTGGTGGAAACGATTATAACTACCCTCTTTTGGCATTCCGAAGTTTCAAACATG 614 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 540 GAGAAATTGGTGGAAACGATTATAACTACCCTCTTTTGGCATTCCGAAGTTTCAAACATG 599 Query 615 CTATGGATTTGGTACCATTTGTTATTAACAAAATCATGGACGTCACAAGTGCATTGATAG 674 |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| Sbjct 600 CTATGGATTTGGTACCATTTGTCATTAACAAAATCATGAACGTCACAAGTGCATTGATAG 659 Query 675 AGGAAGGTGCCATGACACTAATAGTTCCAGGAAACCTTCCAATCGGTTGTTCTGCGGCTC 734 |||||||||| ||||||| || |||||||||||||||||||||||||||||||||| || Sbjct 660 AGGAAGGTGCGGTGACACTGATGGTTCCAGGAAACCTTCCAATCGGTTGTTCTGCGGTTC 719 Query 735 TACTAGAGCGGTTTAATGATAATAGTGGATGGCTTTATGACTCGAGGAACCAATGCTACA 794 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 720 TACTAGAGCGGTTTAATGATAATAGTGGATGGCTTTATGACTCGAGGAACCAATGCTACA 779 Query 795 TGCCATTGAACAATTTGGCTAAGCTTCACAATGATAAGCTCAAGAAAGGCCTCGCGGCTC 854 |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| Sbjct 780 AGCCATTGAACAATTTGGCTAAGCTTCACAACGATAAGCTCAAGAAAGGCCTTGCGGCTC 839 Query 855 TAAGAAAAAAGTACCCTTATGCCAAAATTATATATGCTGATTATTACAGTTCTGCCATGC 914 ||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||||| Sbjct 840 TAAGAGAAAAGTACCCTCATGCCAAAATTATGTATGCTGATTATTACAGTTCTGCCATGC 899 Query 915 AATTCTTCAACTCACCTTCCAAATACGGTTTCACTGGAAGTGTCCTAAAGGCATGTTGTG 974 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 900 AATTCTTCAACTCACCTTCCAAATACGGTTTCACTGGAAGTGTCCTAAAGGCATGTTGTG 959 Query 975 GAGGAGGAGATGGAAGATACAACGTGCAACCAAACGTGCGGTGCGGAGAAAAGGGTTCAA 1034 |||||||||||||||||||||||| | |||||| |||||||||||||||||||||||||| Sbjct 960 GAGGAGGAGATGGAAGATACAACGCGAAACCAAGCGTGCGGTGCGGAGAAAAGGGTTCAA 1019 Query 1035 CCACTTGCGAAGATCCATCAACGTACGCAAATTGGGACGGAATTCACCTCACTGAAGCGG 1094 ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1020 CCACTTGCGAAAATCCATCAACGTACGCAAATTGGGACGGAATTCACCTAACTGAAGCGG 1079 Query 1095 CTTACCGCCACATTGCAACTGGTCTCATCTCCGGCCGTTTCACCATGCCTACTTATAATT 1154 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || Sbjct 1080 CTTACCGCCACATTGCAACTGGTCTCATCTCCGGCCGTTTCACCATGCCTTCTTATGAT- 1138 Query 1155 AATAACAATTAAGTTA-CTCATAAGTTGTAA 1184 || ||||||| ||| || ||||||||||| Sbjct 1139 AA---CAATTAA-TTAACTTATAAGTTGTAA 1165 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 47729892084 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5