BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G45920.1
Length=897
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494387 jgi|Araly1|494387|fgenesh2_kg.8__203__AT5G45920.1 1243 0.0
> Ahg494387 jgi|Araly1|494387|fgenesh2_kg.8__203__AT5G45920.1
Length=798
Score = 1243 bits (673), Expect = 0.0
Identities = 742/776 (96%), Gaps = 2/776 (0%)
Strand=Plus/Plus
Query 40 TTTCTCAAGAAGATTGTGTGGAAGATGATGAGACGGAAGATTTTTCTCTTTGGTGATTCC 99
||||||||||| | ||| ||||||||||||||| ||||||||||||||| ||||||||
Sbjct 23 TTTCTCAAGAAAACAGTGAGGAAGATGATGAGACAGAAGATTTTTCTCTTCGGTGATTCA 82
Query 100 ATCACTGAAGAATCCTTTAGTGACGGTGGCTGGGGTGCTTCTCTCGCCGATCTTCTCCGC 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 83 ATCACTGAAGAATCCTTTAGTGACGGTGGCTGGGGTGCTTCTCTCGCCGATCTTCTCCGC 142
Query 160 CGCAAGGCTGATATGGTGCTACGAGGATACAGTGGATATAACACGAGGTGGGCACTGAAA 219
||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 143 CGCAAGGCTGATATGGTGCTAAGAGGATACAGTGGATATAACACGAGGTGGGCGTTGAAA 202
Query 220 GTGGTGGAGAGAGTTTTTCCGGTGGCAGAAGAAGACGGCGGAGATTCTCCGGCAGCTGTG 279
|||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||
Sbjct 203 GTGGTGGAGAGAGTTTTTCCGGCGGCAGAAGAAGACGGCCGAGATTCTCCGGCGGCTGTG 262
Query 280 ACTGTTTTCTTTGGAGCGAACGACGCGTGTCTTCCGGAGAGATGCTCGGGGTTTCAGCAT 339
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 263 ACTGTATTCTTTGGAGCGAACGACGCGTGTCTGCCGGAGAGATGCTCGGGGTTTCAGCAT 322
Query 340 GTGCCACTTCACGAGTACAAGCAGAATCTTCGCTCTATTGTTTCGTTTCTCAAGAATCGT 399
||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 323 GTGCCACTTGACGAGTACCAGCAGAATCTTCGCTCTATTATTTCGTTTCTCAAGAATCGC 382
Query 400 TGGCCACAAACGGCCATTATTCTTATAACTCCGCCTCCAATAGACGAAGAGGCCCGCCTC 459
||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 383 TGGCCACAAACGGCCATTATTCTTATATCTCCGCCTCCAATCGACGAAGAGGCCCGCCTC 442
Query 460 AGATATCCTTATATCGAAAACACAACGGGGTTGCCGGAAAGAACGAATGAAGTAGCCGGA 519
||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||
Sbjct 443 AGATATCCTTATATCGAAAACACAACGGGATTGCCAGAAAGAACGAATGAAGTTGCCGGG 502
Query 520 CTATACGCAAAAGCATGTATAGCAGTAGCTGAGGAATGTCAAATTTCGGTCACTGATCTT 579
|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 503 CTATACGCAAAAGCATGTATAGCAGTAGCTGAGGAATGTCAAATATCGGTCATTGATCTT 562
Query 580 TGGTCCAAAATGCAGCAAATTCCAAATTGGCAAACAGAATGTCTATGGGACGGGTTACAT 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 563 TGGTCCAAAATGCAGCAAATTCCAAATTGGCAAACAGAATGTCTATGGGACGGGTTACAT 622
Query 640 TTGAGTCGGGTCGGTAACAAAGTAGTGTTTGAAGAAGTAGCAAAGAAGCTTAAAGAAGAA 699
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 623 TTGAGTCGGGTTGGTAACAAAGTAGTGTTTGAAGAAGTAGCAAAGAAGCTTAAAGAAGAA 682
Query 700 GGCATTGGAGCTGAGGACTTAGCTGTGGATCTTCCCCTTATAGAAGATGTTGACCCTAAG 759
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 683 GGCATTGGAGCTGAGGACTTAGCTGTGGATCTTCCCCTTATAGAAGATGTTGACCCAAAG 742
Query 760 GATCCTCTCAAATCCTTTGATGAGTTTTGATGCTTTATATTA-CTACCATGCAGTT 814
|||||||||||| ||||||||||||||||||||||||||||| | | |||| ||||
Sbjct 743 GATCCTCTCAAAGCCTTTGATGAGTTTTGATGCTTTATATTATC-ATCATGTAGTT 797
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33243183624
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5