BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G45930.1
Length=1477
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494386 jgi|Araly1|494386|fgenesh2_kg.8__202__AT5G45930.1 2089 0.0
Ahg946346 jgi|Araly1|946346|scaffold_702575.1 1011 0.0
> Ahg494386 jgi|Araly1|494386|fgenesh2_kg.8__202__AT5G45930.1
Length=1361
Score = 2089 bits (1131), Expect = 0.0
Identities = 1289/1365 (94%), Gaps = 12/1365 (1%)
Strand=Plus/Plus
Query 18 CAACAAAAAACGAATTCTCGAAGAGAAAGACACTGAAATCGAAAAATCTAT--AGAGAGC 75
||||| ||||||||||||| |||||||||| || |||||| | |||||||| |||||||
Sbjct 1 CAACACAAAACGAATTCTCAAAGAGAAAGAGAC-GAAATC-AGAAATCTATAGAGAGAGC 58
Query 76 T--CACTCACTAGCAATGGCGTCTCTTCTCGGAAG-ATCTCCTTCTTCAATCTTGACCTG 132
| ||||||||| ||||||||||||||||||| || |||||||||||||||||| || ||
Sbjct 59 TCCCACTCACTAACAATGGCGTCTCTTCTCGG-AGCATCTCCTTCTTCAATCTTCACTTG 117
Query 133 CCCTCGTATTTCTTCTCCTTCCTCAACATCTTCAATGTCCCATCTCTGCTTCGGACCAGA 192
||||||| ||||||||||||||||||||||||| || |||| | |||||||||||||||
Sbjct 118 CCCTCGTCTTTCTTCTCCTTCCTCAACATCTTCTATCTCCCCTGTCTGCTTCGGACCAGG 177
Query 193 GA-AACTTTCTGGAAGAATCCAATTCAATCCAAAGAAGAACAGATCTCGTTACCATGTCT 251
|| || ||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 178 GAGAA-TTTGTGGAAGAATCCAATTCAATCCAAAGAAGAACAGATCTCGTTACCATGTTT 236
Query 252 CTGTTATGAATGTCGCTACAGAGATCAACTCTGTTGAACAAGCAAAGAAGATTGATTCAA 311
|||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||
Sbjct 237 CTGTTATGAATGTCGCTACAGAGATCAACTATGTTGAACAAGGAAAGAAGTTTGATTCAA 296
Query 312 AGGAAAGTGCAAGACCTGTTTATCCGTTTGCTGCTATAGTTGGACAAGATGAGATGAAGC 371
|||||||||| || || |||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 297 AGGAAAGTGCGAGGCCGGTTTATCCATTTGCTGCTATTGTTGGACAAGATGAGATGAAGC 356
Query 372 TATGCCTTTTGTTAAATGTGATTGACCCGAAGATAGGTGGTGTGATGATAATGGGAGATA 431
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 357 TATGCCTTTTGTTAAATGTGATTGACCCGAAGATTGGCGGTGTGATGATAATGGGAGATA 416
Query 432 GAGGAACTGGTAAATCAACAACTGTTAGATCTTTAGTTGATTTGCTTCCTGAGATCACTG 491
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 417 GAGGAACTGGTAAATCAACAACTGTTAGATCTTTAGTTGATTTGCTTCCTGAGATCACGG 476
Query 492 TTGTTTCTGGTGATCCGTATAACTCAGACCCGAGAGATCCTGAGTGTATGGGAAAGGAAG 551
||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 477 TTGTTGCTGGTGATCCGTATAACTCAGACCCGAGAGATCCCGAGTGTATGGGAAAGGAAG 536
Query 552 TAAGAGAGAAAGTTCAAAAGGGAGAAGAATTGTCTGTTATTGAAACCAAAATCAATATGG 611
|||| ||||||||||||||||||||| ||||| | ||||| |||||||||||||||||||
Sbjct 537 TAAGGGAGAAAGTTCAAAAGGGAGAACAATTGCCGGTTATCGAAACCAAAATCAATATGG 596
Query 612 TTGATCTTCCTTTGGGTGCTACTGAAGATAGAGTTTGTGGAACTATTGATATCGAAAAGG 671
||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||| |
Sbjct 597 TTGATCTTCCTTTAGGTGCTACGGAAGATAGAGTTTGCGGAACTATTGATATCGAAAAAG 656
Query 672 CTTTAACCGAAGGTGTTAAGGCGTTTGAGCCTGGACTACTAGCTAAAGCTAATAGAGGGA 731
| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 657 CCTTAACTGAAGGTGTTAAGGCGTTTGAGCCTGGACTACTAGCTAAAGCCAATAGAGGGA 716
Query 732 TTCTTTATGTTGATGAAGTTAATCTTTTGGATGATCATTTAGTTGATGTTCTTCTTGATT 791
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 717 TTCTTTATGTTGATGAAGTTAATCTCTTGGATGATCATTTAGTTGATGTTCTTCTTGATT 776
Query 792 CAGCTGCATCTGGTTGGAACACTGTTGAAAGAGAAGGGATATCGATTTCTCATCCTGCTC 851
| |||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 777 CTGCTGCATCGGGTTGGAACACTGTTGAAAGAGAAGGGATTTCGATTTCTCACCCTGCTC 836
Query 852 GGTTTATCCTCATTGGTTCAGGAAATCCTGAAGAAGGAGAGCTTAGACCACAGCTTCTTG 911
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 GGTTTATCCTAATTGGTTCAGGAAATCCTGAAGAAGGAGAGCTTAGACCACAGCTTCTTG 896
Query 912 ACAGGTTTGGTATGCACGCGCAAGTAGGGACGGTTAGAGACGCCGAGCTGAGAGTTAAGA 971
| ||||||||||||||||||||||||||||| ||||| ||||||||||| ||||| ||||
Sbjct 897 ATAGGTTTGGTATGCACGCGCAAGTAGGGACAGTTAGGGACGCCGAGCTAAGAGTCAAGA 956
Query 972 TTGTTGAAGAACGAGCTCGTTTCGATAGTAACCCAAAGGAGTTTCGAGAAACTTATCAAG 1031
|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 957 TTGTTGAAGAACGAGCTCGTTTTGATAGTAACCCAAAGGAGTTTCGAGAATCTTATCAAG 1016
Query 1032 AAGAACAACTGAAGCTTCAGGAGCAGATTACAACTGCAAGAAGCAATCTTTCTGCAGTTC 1091
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 CAGAACAACTGAAGCTTCAAGAGCAGATTACAACTGCAAGAAGCAATCTTTCTGCAGTTC 1076
Query 1092 AGATTGATCAAGATTTGAAAGTGAAGATCTCTAAGGTCTGTGCTGAGCTGGACGTTGATG 1151
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1077 AGATTGATCAAGATTTGAAAGTGAAGATCTCTAAGGTCTGTGCTGAGCTGGACGTTGACG 1136
Query 1152 GATTGAGAGGAGACATGGTGATAAACAGAGCAGCTAGAGCGCTTGCAGCACTCCAAGGAA 1211
||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||
Sbjct 1137 GATTGAGAGGAGACATGGTGATAAACAGAGCGGCTAGAGCACTTGCGGCACTCCAAGGAA 1196
Query 1212 GAGATCAAGTTACAGCTGAAGATGTTGGTATTGTTATACCGAATTGTTTGA-GACACAGA 1270
||||||||||||||||||||||||||||||||||||||||||| || || | ||||||||
Sbjct 1197 GAGATCAAGTTACAGCTGAAGATGTTGGTATTGTTATACCGAACTGCTT-ACGACACAGA 1255
Query 1271 CTCAGAAAAGATCCATTGGAGTCTATGGATTCGGGAATTCTCGTTACCGAGAAGTTCTAT 1330
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 CTCAGAAAAGATCCATTGGAGTCTATGGATTCGGGAATTCTCGTTACCGAGAAGTTCTAC 1315
Query 1331 GAGGTTTTCACTTAGAGTAAAGATAGATTCTTGAAACACATTTAA 1375
|||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 1316 GAGGTTTTCAGTTAGAGTAAAGATAGATTCTTGAAACAAATTTAA 1360
> Ahg946346 jgi|Araly1|946346|scaffold_702575.1
Length=1423
Score = 1011 bits (547), Expect = 0.0
Identities = 1044/1277 (82%), Gaps = 61/1277 (5%)
Strand=Plus/Plus
Query 88 AATGGCGTCTCTTCTCGGAAGATCTCCTTCTTCAATCTTGACCTGC-CC-TCGTATTTCT 145
||||||||||||||| |||| |||| ||||| | ||| || || | || || | | |||
Sbjct 42 AATGGCGTCTCTTCTTGGAACATCTTCTTCTGCTATC-TGGGCTTCTCCTTC-TCTCTCT 99
Query 146 TCTCCTTCCTCAACATCTTC-A-ATGTCCCATCTCTGCTTC-GGACCAGAGAAACTT-TC 201
||| ||||||| ||| |||| | | |||||| | |||||| || |||| |||| || |
Sbjct 100 TCTTCTTCCTCTACACCTTCGACTTCTCCCAT-T-TGCTTCAGG-CCAGGGAAA-TTGTT 155
Query 202 T-G--G-AAG---AAT-C--CAATTCA-AT----CCAAAGAAGAACAGATCTCGTTACCA 246
| | | ||| ||| | ||| || || |||||||||||||| |||||||||||
Sbjct 156 TGGAAGCAAGTTAAATGCAGGAATCCAGATAAGGCCAAAGAAGAACAGGTCTCGTTACCA 215
Query 247 TGTCTCTGTTATGAATGTCGCTACAGAGATCAACTCTGTTGAACAAGCAAAGAAGATTGA 306
||| |||||||||||||| || ||||| ||||||||| |||||||| | |||| ||||
Sbjct 216 TGTTTCTGTTATGAATGTAGCCACAGAAATCAACTCTACTGAACAAGTAGGGAAGTTTGA 275
Query 307 TTCAAAGGAA-AGTGCAAGACCTGTTTATCCGTTTGCTGCTATAGTTGGACAAGATGAGA 365
|||||| ||| ||||| ||||| |||||||| ||||| |||||||| || ||||||||||
Sbjct 276 TTCAAA-GAAGAGTGCGAGACCGGTTTATCCATTTGCAGCTATAGTAGGGCAAGATGAGA 334
Query 366 TGAAGCTATGCCTTTTGTTAAATGTGATTGACCCGAAGATAGGTGGTGTGATGATAATGG 425
||||| |||| ||| |||| ||||||||||| || ||||| |||||||||||||| ||||
Sbjct 335 TGAAGTTATGTCTTCTGTTGAATGTGATTGATCCAAAGATTGGTGGTGTGATGATTATGG 394
Query 426 GAGATAGAGGAACTGGTAAATCAACAACTGTTAGATCTTTAGTTGATTTGCTT-CCTGAG 484
||||||||||||| || ||||| |||||||||||||| ||||||||| || || || |||
Sbjct 395 GAGATAGAGGAACCGGAAAATCTACAACTGTTAGATCATTAGTTGATCTG-TTACCAGAG 453
Query 485 ATCACTGTTGTTTCTGGTGATCCGTATAACTCAGACCCGAGAGATCCTGAGTGTATGGGA 544
|| | ||| ||| | ||||| ||||||||||| || |||| ||||||||||| ||||||
Sbjct 454 ATTAATGTAGTTGCAGGTGACCCGTATAACTCGGATCCGATAGATCCTGAGTTTATGGGT 513
Query 545 AAGGAAGTAAGAGAGAAAGTTCA-AAAGG-GAGAAGAATTGTCTGTTATTGAAACCAAAA 602
||||||||||||| |||| | ||||| ||||| | || | ||||||| || || |
Sbjct 514 GTTGAAGTAAGAGAGAGAGTTGAGAAAGGAGAGAA-AGTT-CCGGTTATTGCGACTAAGA 571
Query 603 TCAATATGGTTGATCTTCCTTTGGGTGCTACTGAAGATAGAGTTTGTGGAACTATTGATA 662
| ||||||||||||||||| |||||||| || |||||||||||||||||||| || ||||
Sbjct 572 TTAATATGGTTGATCTTCCGTTGGGTGCAACAGAAGATAGAGTTTGTGGAACAATCGATA 631
Query 663 TCGAAAAGGCTTTAACCGAAGGTGTTAAGGCGTTTGAGCCTGGACTACTAGCTAAAGCTA 722
||||||||||||| || |||||||| || || ||||||||||| | | ||||||||||
Sbjct 632 TCGAAAAGGCTTTGACAGAAGGTGTAAAAGCCTTTGAGCCTGGTTTGTTGGCTAAAGCTA 691
Query 723 ATAGAGGGATTCTTTATGTTGATGAAGTTAATCTTTTGGATGATCATTTAGTTGATGTTC 782
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 692 ATAGAGGGATTCTCTATGTTGATGAAGTTAATCTTTTGGATGATCATTTGGTTGATGTTC 751
Query 783 TTCTTG-ATTCAGCTGCATCTGGTTGGAACACTGTTGAAAGAGAAGGGATATCGATTTCT 841
|| ||| |||||||||| || |||||||| || ||||| |||||||| || ||||||||
Sbjct 752 TT-TTGGATTCAGCTGCTTCCGGTTGGAATACGGTTGAGAGAGAAGGAATTTCGATTTCC 810
Query 842 CATCCTGCTCGGTTTATCCTCATTGGTTCAGGAAATCCTGAAGAAGGAGAGCTTAGACCA 901
|| || || |||||||| | |||||||| |||||||| ||||||||||||||||| |||
Sbjct 811 CACCCGGCGAGGTTTATCTTAATTGGTTCGGGAAATCCGGAAGAAGGAGAGCTTAGGCCA 870
Query 902 CAGCTTCTTGA-CAGGTTTGGTATGCACGCGCAAGTAGGGACGGTTAGAGACGCCGAGCT 960
||||||||||| | ||||||| ||||| ||||||||||||||||||||||| || || |
Sbjct 871 CAGCTTCTTGATC-GGTTTGGAATGCATGCGCAAGTAGGGACGGTTAGAGATGCTGATTT 929
Query 961 GA-GAGTTAAGATTGTTGAAGA-ACGAGCTCGTTTCGATAGTAACCCAAAGGAGTTTC-G 1017
| |||| |||||||| ||||| | ||||||||||||||||| |||||||||| |||| |
Sbjct 930 -ACGAGTCAAGATTGTCGAAGAGA-GAGCTCGTTTCGATAGTGACCCAAAGGA-TTTCCG 986
Query 1018 AGAAACTTATCAAGAA--GAACA--ACTGAAGCTTCAGGAGCAGATTACAACTGCAAGAA 1073
|||||||| ||| || || || || |||||||| || |||||| ||||||| ||
Sbjct 987 TGAAACTTA-CAA-AACTGAGCAGGAC--AAGCTTCAAGACCAGATTTCAACTGCTAGG- 1041
Query 1074 GCAA-TCTTTC-TGCAGTTCAGATTGATCAAGATTTGAAAGTGAAGATCTCTAAGGTCTG 1131
|||| |||||| | | ||||||||||||| || ||||| ||||||||||||| ||| ||
Sbjct 1042 GCAAATCTTTCCT-CGGTTCAGATTGATCGGGAATTGAAGGTGAAGATCTCTAGGGTATG 1100
Query 1132 TGCTGAGCTGGACGTTGATGGATTGAGAGGAGACATGGTGA-TAAACAGAGCAGCTAGAG 1190
| | ||||| | || || || |||||||| ||||| |||| ||| ||||||||| | ||
Sbjct 1101 TTCAGAGCTCAATGTCGACGGGTTGAGAGGGGACATAGTGACTAA-CAGAGCAGCAAAAG 1159
Query 1191 CGCTTGCAGCACTCCAAGG-AAGAGATCAAGTTACAGCTGAAGATGTTGGTATTGTTATA 1249
| |||||||| ||| |||| || ||||| ||| || | || ||||||| | |||||
Sbjct 1160 CACTTGCAGCTCTCAAAGGGAA-AGATCGAGTAACTCCAGATGATGTTGCAACCGTTATC 1218
Query 1250 CCGAATTGTTTGAGACACAGACTCAGAAAAGATCCATTGGAGTCTATGGATTCGGGAATT 1309
|| || || || || ||| | || || ||||||||| |||| ||||| ||||||||| ||
Sbjct 1219 CCTAACTGCTTAAGGCACCGTCTGAGGAAAGATCCACTGGAATCTATCGATTCGGGAGTT 1278
Query 1310 CTCGTTACCGAGAAGTT 1326
|| ||| ||||||||||
Sbjct 1279 CTAGTTTCCGAGAAGTT 1295
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55268945495
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5