BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G45940.1
Length=866
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494385 jgi|Araly1|494385|fgenesh2_kg.8__201__AT5G45940.1 1151 0.0
> Ahg494385 jgi|Araly1|494385|fgenesh2_kg.8__201__AT5G45940.1
Length=783
Score = 1151 bits (623), Expect = 0.0
Identities = 736/789 (93%), Gaps = 14/789 (2%)
Strand=Plus/Plus
Query 84 TCTCTGTTAATATGTCTTCAACAAC-A--ACAGATTCTACAGAATTGCAAAATCTGATCA 140
||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 1 TCTCTGTTAATATGTCTTCAACAACAACTACAGATTCTACAGAATTGCAAAATCTGATCA 60
Query 141 AACTG-TTTCAAAATTGCCAAACTCATCCTCGTCAACATTTTCCTGCAAAATCTTCAGCT 199
||| | |||||||||| | ||||||||| |||||||||||| ||| ||||||||||||||
Sbjct 61 AAC-GATTTCAAAATTACGAAACTCATCTTCGTCAACATTTACCTCCAAAATCTTCAGCT 119
Query 200 GTATTAGTTTGTCTATACCAAGAACAAAGAGAAGACAAAAACGAGCTACGCGTAATCTTA 259
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 120 GTCTTAGTTTGTCTATACCAAGAACAAAGAGAAGACAAAAACGAGCTACGTGTAATCTTA 179
Query 260 ACCAAACGAT-CTACTACTCTCTCTTCTCATCCTGGGGAAGTAGCATTGCCTGGAGGAAA 318
|||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 ACCAAACGCTCCT-CTACTCTCTCTTCTCATCCTGGGGAAGTAGCATTGCCTGGAGGAAA 238
Query 319 AAGAGACCAAGAAGATAAAGATGATATAGCTACTGCGTTGAGAGAAGCTCGTGAAGAAAT 378
||||||| | |||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 239 AAGAGACGAGGAAGATAAAGATGATATATCTACCGCGTTGAGAGAAGCTCGTGAAGAAAT 298
Query 379 CGGTTTAGATCCTTCTCTTGTTACAATCATTTCTGTTCTTGAACCATTTGTTAACAAGAA 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 CGGTTTAGATCCTTCTCTTGTTACAATCATTTCTGTTCTTGAACCATTTGTTAACAAGAA 358
Query 439 GGGAATGTCGGTAGCACCAGTTATCGGTTTTCTACACGATAAGAAAGCGTTTAAACAGTT 498
|||||||||||| | |||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 359 GGGAATGTCGGTTGTACCAGTTATCGGTTTTCTACTCGATAAGAAAGCGTTTAAACCGTT 418
Query 499 ACCAAATCCAGCTGAAGTGGAAGAGATCTTTGATGTGCCATTAGAGATGTTCCTCAAGGA 558
|||||||||||||||||||||||| ||||| ||||| || || || ||||||||||||||
Sbjct 419 ACCAAATCCAGCTGAAGTGGAAGAAATCTTCGATGTTCCGTTGGAAATGTTCCTCAAGGA 478
Query 559 CA-GAAACAGGCG-AGCAGAGGAACGAGAGCATGAAGGAGAGAGATATCTTCTTCAATAC 616
|| ||| |||||| | | ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 479 CAAGAA-CAGGCGGA-CTGAGGAACGAGAGCATGAAGGAGAGAGATACCTTCTTCAATAC 536
Query 617 TTTGATTACTATTCCGAAGATAAAGAGAGAAGCTTTATCATATGGGCACTCACTGCTGGT 676
|| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 537 TTCGATTACTATTCCGAAGATAAAGAGAGAAACTTTATCATATGGGCACTCACTGCTGGT 596
Query 677 ATTCTGATCAGAGTTGCCTCCATTGTTTATCAGAGATTACCGGAGTTTCAAGAACGTAAA 736
||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 597 ATTCTCATCAGAGTTGCCTCCATTGTTTATCAGAGATCACCAGAGTTTCAAGAACGTAAG 656
Query 737 CCGAGTTTCTGGAATCAGCCTAACTGATTCTTGACTTGATCTGATTGAGAAAATTGAAAC 796
|| || |||||||||||||| ||||||||||| ||||||||||||||| ||||| |||||
Sbjct 657 CCAAGATTCTGGAATCAGCCCAACTGATTCTTAACTTGATCTGATTGAAAAAAT-GAAAC 715
Query 797 TTTTATGTATAATAAGCGATACA-GATTGAATCTTCTTTAAATGTGTTTCAAGAATCTAT 855
||| ||||||||||||| ||||| || |||||||||||||||||||| |||||||||||
Sbjct 716 TTTCATGTATAATAAGCAATACAAGAC-GAATCTTCTTTAAATGTGTTGCAAGAATCTAT 774
Query 856 CTTTACTCT 864
|||||||||
Sbjct 775 CTTTACTCT 783
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32061373197
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5