BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G45950.1
Length=1337
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494383 jgi|Araly1|494383|fgenesh2_kg.8__199__AT5G45950.1 1912 0.0
> Ahg494383 jgi|Araly1|494383|fgenesh2_kg.8__199__AT5G45950.1
Length=1242
Score = 1912 bits (1035), Expect = 0.0
Identities = 1154/1211 (95%), Gaps = 9/1211 (1%)
Strand=Plus/Plus
Query 46 AAAAGTCACACATTCTCTCTATTAATTAAACATGTTGCTTGTTGCGTTTGTGACTCTTTT 105
||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 1 AAAAGTCTCACATTCTCTCTATCAATTAAACATGTTGCTTGTAGCGTTTGTGACTCTTTT 60
Query 106 GGTAGCAGTAGCTTTGCAGCCACTACCGT-CAGTGTTGTCTTTGGACGTTCACCTTCTTC 164
||||||||||||||||||||| ||||| | ||||| || ||||||||||||||||||| |
Sbjct 61 GGTAGCAGTAGCTTTGCAGCCGCTACC-TGCAGTGATGGCTTTGGACGTTCACCTTCTCC 119
Query 165 GGCAGCTAGCCGCAAAGCACAATGTGACATCGATACTTGTGTTTGGAGATTCTAGTGTCG 224
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 120 GGCAGCTAGCCGCGAAGCACAATGTGACATCAATACTTGTGTTTGGAGATTCTAGTGTCG 179
Query 225 ATCCAGGGAACAATAATTTCATTAAAACCGAAATGAAAGGGAATTTTCCACCTTATGGTG 284
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 180 ATCCAGGAAACAATAATTTCATTAAAACCGAAATGAAAGGAAATTTTCCACCTTATGGTG 239
Query 285 AAAATTTCATCAACCATAAACCCACCGGTAGATTATGCGATGGATTACTCGCTCCCGATT 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 AAAATTTCATCAACCATAAACCCACCGGTAGATTATGCGATGGATTACTCGCTCCCGATT 299
Query 345 ATATTGCGGAGGCCATGGGTTACCCTCCCATACCGGCTTTTCTTGATCCATCCCTAACCC 404
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 300 ATATTGCGGAGGCCATGGGTTACCCTCCCATACCGGCTTTTCTTGATCCAACCCTAACCC 359
Query 405 AAGCTGATCTAACTCGCGGTGCAAGTTTTGCCTCTGCTGGTTCTGGCTATGACGATCTCA 464
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 AAGCTGATCTAACCCGCGGTGCAAGTTTTGCCTCTGCTGGTTCTGGCTATGACGATCTCA 419
Query 465 CAGCTAATATATCAAACGTATGGAGTTTCACTACACAAGCCAATTACTTTCTACATTACA 524
||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||||
Sbjct 420 CAGCTAATATATCAAACGTGTGGAGTTTCACTACACAAGCCAATTACTTTTTGCATTACA 479
Query 525 AGATTCATCTGACTAAATTGGTCGGTCCATTAGAGAGCGCTAAAATGATAAATAATGCTA 584
||||||| ||||||||| ||||||||||| |||||||| | ||||||||||||||||| |
Sbjct 480 AGATTCACCTGACTAAACTGGTCGGTCCAATAGAGAGCTCGAAAATGATAAATAATGCGA 539
Query 585 TATTTCTTATGAGTATGGGATCAAATGACTTTCTTCAAAATTACTTAGTCGATTTTACTC 644
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 540 TATTTCTTATGAGTATGGGATCAAATGACTTTCTTCAAAATTACTTGGTCGATTTTACTC 599
Query 645 GACAAAAGCAATTCACGGTTGAGCAATACATCGAGTTTCTCTCCCACCGTATGCTTTACG 704
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 600 GACAAAAGCAATTCACGGTAGAGCAATACATCGAGTTTCTGTCCCACCGTATGCTTTACG 659
Query 705 ACGCCAAGATGTTGCATAGGCTTGGAGCTAAAAGGTTGGTGGTAGTGGGAGTTCCTCCCA 764
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 660 ACGCCAAGATGTTGCATAGGCTCGGAGCTAAAAGGTTGGTGGTGGTGGGAGTTCCTCCCA 719
Query 765 TGGGATGCATGCCTTTAATTAAATACCTACGAGGCCAAAAAACTTGTGTAGATCAACTAA 824
||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||
Sbjct 720 TGGGATGCATGCCTTTAATCAAATACCTAAGAGGCCAAAAAACTTGCGTAGATCAACTAA 779
Query 825 ACCAAATCGCTTTCTCCTTTAACGCCAAAATCATCAAAAATCTAGAGCTTCTTCAGTCTA 884
||||||||||||||||||||||| ||||||| ||||| |||||||||||||| |||||||
Sbjct 780 ACCAAATCGCTTTCTCCTTTAACTCCAAAATAATCAAGAATCTAGAGCTTCTCCAGTCTA 839
Query 885 AAATCGGTTTGAAAACCATCTACGTTGATGCTTATTCGACCATCCAAGAAGCCATTAAAA 944
|| ||||| |||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 840 AATTCGGTCTGAAAACCATCTACGTTGATGCCTATTCGGCCATCCAAGAAGCCATTAAAA 899
Query 945 ATCCGAGAAAATTTGGTTTCGTCGAGGCTTCGCTAGGCTGTTGTGGAACAGGTACATACG 1004
|||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 900 ATCCTAGAAAATATGGTTTCGTCGAGGCTTCACTAGGCTGTTGTGGAACAGGTACATACG 959
Query 1005 AATATGGAGAGACATGCAAAGATATGCAAGTATGCAAAGATCCTACCAAATACGTTTTTT 1064
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 AATATGGAGAGACATGCAAAGATATGCAAGTATGCAAAGATCCTACCAAATACGTTTTTT 1019
Query 1065 GGGACGCTGTCCATCCAACACAAAGAATGTATCAAATCATTGTTAAGAAGGCAATCGCAT 1124
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1020 GGGACGCTGTCCATCCAACACAAAGAATGTATCAAATCATTGTTAAGAAGGCAATTGCAT 1079
Query 1125 CCATCAGTGAAGAGTTTCTTGTTTAGAAATATTATATGTTTGTATTTTACTATCATGATT 1184
|||| |||||||||||||||||||||||||||||||| || |||| ||||||||||||
Sbjct 1080 CCATTAGTGAAGAGTTTCTTGTTTAGAAATATTATATATTCATATT--ACTATCATGATT 1137
Query 1185 TAT--GAAAAATTCTA-GATGTAATTGAAAA-GCATTCAAAATGTTAAATTTAATGGTTC 1240
||| ||| ||||||| |||||||||||||| | ||||||||||||||||||||||||||
Sbjct 1138 TATATGAACAATTCTAAGATGTAATTGAAAAAG-ATTCAAAATGTTAAATTTAATGGTTC 1196
Query 1241 AAATCATCTAC 1251
||||| |||||
Sbjct 1197 AAATCTTCTAC 1207
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50017267104
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5