BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G45960.1
Length=1321
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494382 jgi|Araly1|494382|fgenesh2_kg.8__198__AT5G45960.1 1892 0.0
> Ahg494382 jgi|Araly1|494382|fgenesh2_kg.8__198__AT5G45960.1
Length=1276
Score = 1892 bits (1024), Expect = 0.0
Identities = 1202/1286 (93%), Gaps = 19/1286 (1%)
Strand=Plus/Plus
Query 43 ATGAGAAGTCATCACAGACATTTTTCTTCATATGTTTCCTTCATCCTCTTCCTATTCCTG 102
||||||| |||||||| ||||| |||||| | | ||||||||||| ||||||| ||||||
Sbjct 1 ATGAGAAATCATCACACACATTCTTCTTCGTCTTTTTCCTTCATCATCTTCCTCTTCCTG 60
Query 103 TTCTTCATCTCCTTCTCATCCTCAACATCAAAACTCGAACCCGCAAAGTCTGAACCTAAA 162
||||||||||||||||||| |||||||||||||||||||||||| || ||||||||
Sbjct 61 TTCTTCATCTCCTTCTCATTCTCAACATCAAAACTCGAACCCGC-AA-----AACCTAAA 114
Query 163 AGAAAACATTCAGTTTCAGCTATTCTCGTGTTCGGAGATTCAACAGTGGATCCGGGCAAT 222
|||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||
Sbjct 115 AGAAAACATTCAGTTTCAGCTATTCTCGTGTTCGGAGATTCAACCGTGGATCCAGGAAAT 174
Query 223 AACAACTACATTGACACAGTATTCAAGTGTAATTTTCCGCCCTATGGACTCGATTTCAGA 282
||||||||||| |||||| |||||||||||||||||||||||||||||| ||||||| |
Sbjct 175 AACAACTACATCGACACAATATTCAAGTGTAATTTTCCGCCCTATGGACAAGATTTCAAA 234
Query 283 AACAAAACTCCGACCGGTAGATTTTGCAACGGTCGACTCGTCACAGATTTTATCGCTTCA 342
||||||| ||| |||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 235 AACAAAATTCCCACCGGTAGATTTTGCAACGGTCGACTCGTCACAGATTTCATTGCTTCA 294
Query 343 TACATTGGTGTGAAGGAGAATGTGCCACCGTATTTGGACCCAAATCTTGGAATAAATGAG 402
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 295 TACATTGGTGTGAAGGAGAATGTGCCACCATATTTGGACCCAAATCTTGGAGTAAATGAG 354
Query 403 TTAATAAGTGGAGTTAGCTTTGCTTCAGCTGGCTCTGGATATGATCCTCTCACTCCAACC 462
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 355 CTAATAAGTGGAGTTAGCTTTGCTTCAGCTGGTTCTGGATATGATCCTCTCACTCCAACC 414
Query 463 ATAACTAACGTGATAGACATTCCGACTCAGCTAGAGTATTTCAGAGAATACAAGAGAAAA 522
|| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 415 ATTACTAACGTGATAGACATTCCGACTCAGCTTGAGTATTTCAGAGAGTACAAGAGAAAA 474
Query 523 TTGGAGGGTAAAATGGGAAAACAAGAAATGGAAAAACACATAGAAGAAGCTATGTTTTGT 582
|||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 475 TTGGAGATTAAAATGGGAAAACAAAAAATGGAAAAACACATAGAAGAAGCTTTGTTTTGT 534
Query 583 GTAAGTGCAGGAACCAACGATTTCGTCATTAATTATTTCACAATTCCCATACGAAGGAAG 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 GTAAGTGCAGGAACCAACGATTTCGTCATTAATTATTTCACAATTCCCATACGAAGGAAG 594
Query 643 ACTTTTACTATCGAAGCTTATCAACAATTCGTTATTTCCAATCTCAAGCAATTTATCCAG 702
||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 595 ACTTTCACTGTCGAAGCTTATCAAAAATTCGTTATTTCCAATCTCAAGCAATTTATTCAG 654
Query 703 GGTTTGTGGAAAGAAGGAGCAAGAAAGATAACAGTGGCAGGTTTACCACCGATTGGGTGT 762
||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 655 GGTTTATGGAAAGAAGGAGCAAGAAAGATAACAGTGGCTGGTATACCACCGATTGGGTGT 714
Query 763 TTGCCGATTGTTATAACATTATTCTCCGGCGAAGCATTGACCAACCGTCGTTGCATTGAC 822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 TTGCCGATTGTTATAACATTATTCTCCGGCGAAGCATTGACCAACCGTCGTTGCATTGAC 774
Query 823 CGTTTCTCCACTGTGGCCACAAACTACAATTTCCTCTTACAAAA-ACAATTGGCCCTCAT 881
||||||||||| |||||||||||||||||||||||||||||||| | |||||| ||||||
Sbjct 775 CGTTTCTCCACCGTGGCCACAAACTACAATTTCCTCTTACAAAATA-AATTGGGCCTCAT 833
Query 882 GCAAGTGGGTTTGGCCCATCTTGGATCCAAAATCTTTTACCTCGACGTCTATAACCCAGT 941
|||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 834 GCAAATGAGTTTGGCCCATCTTGGGTCCAAAATCTTTTACCTCGACGTCTATAACCCAGT 893
Query 942 TTATGAGGTCATTCGTGACCCTCGAAAATTCGGGTTCGAGGAAGTCTTCAGTGGATGTTG 1001
||||||||||||| ||||||| ||||||| ||||| ||||||| |||||||||||||
Sbjct 894 CTATGAGGTCATTCATGACCCTAGAAAATTTGGGTTTAAGGAAGTGTTCAGTGGATGTTT 953
Query 1002 TGGAAGTGGATACCTAGAGGCATCGTTTTTGTGTAATCCAAAGTCATATGTGTGTCCCAA 1061
|||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 954 TGGAAGTGGATACCTAGAGGCATCGTTTTTGTGTAACCCAAAGTCATATGTGTGTTCCAA 1013
Query 1062 TACATCTGCTTATGTCTTCTTTGACTC-TATCCATCCAAGTGAGAAGACTTACTTCAGTC 1120
|||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||
Sbjct 1014 TACATCTGCTTATGTCTTTTTTGA-TCCTATCCATCCAAGTGAGAAGACTTACTTCAGTC 1072
Query 1121 TTTTTAGATCTCTCCGACCAATTTATGATTCTATTCTCGGTTCTTTCTGAAATTTTTAAT 1180
|||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||
Sbjct 1073 TTTTTAGATCTCTCCGACCAATTTATGATTCTATTCTCGGTTGTTTCTGAGATTTT-AAT 1131
Query 1181 TAATATTATGATCACTATTAGCTAATTGATAAGTTAATTTCAATTTACA--TACACCTCT 1238
|| ||||||||||| |||||| |||||||||||||||||||||| |||| ||||| | |
Sbjct 1132 TATTATTATGATCAATATTAGTTAATTGATAAGTTAATTTCAATATACAGATACACTTTT 1191
Query 1239 TTCTTCCATTATGAGTGAC-GAAATGTAATGTTGGTCTAT----GTGTTAATATTTCAGT 1293
|||||||||| |||||| | ||||||||||| |||||||| ||||||||||||||||
Sbjct 1192 TTCTTCCATTTTGAGTG-CTGAAATGTAATGATGGTCTATATATGTGTTAATATTTCAGT 1250
Query 1294 TTGAAATGCAAAATAATTAGTGTACT 1319
||||||||||||||||||||||||||
Sbjct 1251 TTGAAATGCAAAATAATTAGTGTACT 1276
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49407300432
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5