BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G45970.1 Length=841 Score E Sequences producing significant alignments: (Bits) Value Ahg494381 jgi|Araly1|494381|fgenesh2_kg.8__197__AT5G45970.1 1075 0.0 > Ahg494381 jgi|Araly1|494381|fgenesh2_kg.8__197__AT5G45970.1 Length=727 Score = 1075 bits (582), Expect = 0.0 Identities = 652/686 (95%), Gaps = 4/686 (1%) Strand=Plus/Plus Query 13 ACAAAAGCAAAGAAAATGAGCACAGCAAGATTCATTAAGTGTGTGACTGTCGGAGATGGA 72 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ACAGAAGCAAAGAAAATGAGCACAGCAAGATTCATTAAGTGTGTGACTGTCGGAGATGGA 60 Query 73 GCAGTGGGAAAGACTTGTATGCTCATTTCATATACCAGCAATACGTTTCCTACGGATTAT 132 ||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||| Sbjct 61 GCAGTAGGAAAGACTTGTATGCTAATTTCATATACCAGCAATACTTTTCCTACGGATTAT 120 Query 133 GTTCCAACAGTTTTCGACAACTTCAGCGCAAATGTGGTGGTCGACGGGAGTACCGTGAAC 192 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 121 GTTCCAACAGTTTTCGACAATTTCAGCGCAAATGTGGTGGTCGACGGGAGTACCGTGAAC 180 Query 193 CTTGGCCTGTGGGATACTGCCGGTCAGGAAGATTATAATAGGCTTAGGCCTTTGAGTTAC 252 || |||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||| Sbjct 181 CTCGGCCTGTGGGATACTGCCGGGCAGGAAGATTATAATAGACTTAGGCCTCTGAGTTAC 240 Query 253 AGAGGAGCAGATGTCTTCTTATTAGCATTTTCCCTTATAAGCAAGGCCAGTTACGAGAAT 312 |||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||| Sbjct 241 AGAGGAGCAGATGTGTTTTTATTAGCATTTTCCCTTATTAGCAAGGCCAGTTACGAGAAT 300 Query 313 ATTCACAAAAAGTGGCTTCCGGAGCTGAAACATTATGCTCCTGGCATCCCCATTGTGCTC 372 |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| Sbjct 301 ATTCACAAAAAGTGGCTTCCGGAGCTGAAACATTATGCGCCTAGCATCCCCATTGTGCTC 360 Query 373 GTCGGAACAAAATTAGATTTGAGGGATGACAAGCAGTTCTTGAAGGATCATCCAGGAGCA 432 ||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||| Sbjct 361 GTCGGTACAAAATTAGATTTGAGGGATGATAAGCAGTTCTTGAAGGATCATCCTGGAGCA 420 Query 433 GCT-TCTATAACAACTGCTCAGGGAGAAGAATTAAGGAAAATGATTGGAGCTGTTAGGTA 491 | | ||||||||||||||||||||||||||||||||||| ||||||||||| || ||||| Sbjct 421 G-TATCTATAACAACTGCTCAGGGAGAAGAATTAAGGAAGATGATTGGAGCCGTAAGGTA 479 Query 492 CTTAGAGTGCAGCTCCAAAACCCAACAGAATGTGAAGGCAGTGTTTGATACAGCGATAAG 551 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 CTTAGAGTGCAGCTCCAAAACCCAACAGAATGTGAAGGCAGTGTTTGATACAGCGATAAG 539 Query 552 GGTAGCTTTGAGGCCACCAAAGGCAAAGAAAAAGATAAAACCATTGAAGACTAAGAGATC 611 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 540 GGTAGCTTTGAGGCCACCAAAGGCAAAGAATAAGATAAAACCATTGAAGACTAAGAGATC 599 Query 612 AAGAATATGCTTTTTCCTATAATATCTGAACAGATTTCAATAAATAACAAA--CATTTAT 669 |||| ||||||||||||| |||||| |||||| |||| ||||||||| ||| |||||| Sbjct 600 AAGATTATGCTTTTTCCTCTAATATTTGAACAAATTTAAATAAATAAAAAAAACATTTAC 659 Query 670 ATATACTTGTATTTTGATAttttttt 695 |||||| ||||||| ||||||||||| Sbjct 660 ATATACATGTATTTCGATATTTTTTT 685 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 31108300272 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5