BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G45970.1

Length=841
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg494381 jgi|Araly1|494381|fgenesh2_kg.8__197__AT5G45970.1         1075    0.0  


> Ahg494381 jgi|Araly1|494381|fgenesh2_kg.8__197__AT5G45970.1
Length=727

 Score = 1075 bits (582),  Expect = 0.0
 Identities = 652/686 (95%), Gaps = 4/686 (1%)
 Strand=Plus/Plus

Query  13   ACAAAAGCAAAGAAAATGAGCACAGCAAGATTCATTAAGTGTGTGACTGTCGGAGATGGA  72
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ACAGAAGCAAAGAAAATGAGCACAGCAAGATTCATTAAGTGTGTGACTGTCGGAGATGGA  60

Query  73   GCAGTGGGAAAGACTTGTATGCTCATTTCATATACCAGCAATACGTTTCCTACGGATTAT  132
            ||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct  61   GCAGTAGGAAAGACTTGTATGCTAATTTCATATACCAGCAATACTTTTCCTACGGATTAT  120

Query  133  GTTCCAACAGTTTTCGACAACTTCAGCGCAAATGTGGTGGTCGACGGGAGTACCGTGAAC  192
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  121  GTTCCAACAGTTTTCGACAATTTCAGCGCAAATGTGGTGGTCGACGGGAGTACCGTGAAC  180

Query  193  CTTGGCCTGTGGGATACTGCCGGTCAGGAAGATTATAATAGGCTTAGGCCTTTGAGTTAC  252
            || |||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||
Sbjct  181  CTCGGCCTGTGGGATACTGCCGGGCAGGAAGATTATAATAGACTTAGGCCTCTGAGTTAC  240

Query  253  AGAGGAGCAGATGTCTTCTTATTAGCATTTTCCCTTATAAGCAAGGCCAGTTACGAGAAT  312
            |||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||
Sbjct  241  AGAGGAGCAGATGTGTTTTTATTAGCATTTTCCCTTATTAGCAAGGCCAGTTACGAGAAT  300

Query  313  ATTCACAAAAAGTGGCTTCCGGAGCTGAAACATTATGCTCCTGGCATCCCCATTGTGCTC  372
            |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct  301  ATTCACAAAAAGTGGCTTCCGGAGCTGAAACATTATGCGCCTAGCATCCCCATTGTGCTC  360

Query  373  GTCGGAACAAAATTAGATTTGAGGGATGACAAGCAGTTCTTGAAGGATCATCCAGGAGCA  432
            ||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct  361  GTCGGTACAAAATTAGATTTGAGGGATGATAAGCAGTTCTTGAAGGATCATCCTGGAGCA  420

Query  433  GCT-TCTATAACAACTGCTCAGGGAGAAGAATTAAGGAAAATGATTGGAGCTGTTAGGTA  491
            | | ||||||||||||||||||||||||||||||||||| ||||||||||| || |||||
Sbjct  421  G-TATCTATAACAACTGCTCAGGGAGAAGAATTAAGGAAGATGATTGGAGCCGTAAGGTA  479

Query  492  CTTAGAGTGCAGCTCCAAAACCCAACAGAATGTGAAGGCAGTGTTTGATACAGCGATAAG  551
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  480  CTTAGAGTGCAGCTCCAAAACCCAACAGAATGTGAAGGCAGTGTTTGATACAGCGATAAG  539

Query  552  GGTAGCTTTGAGGCCACCAAAGGCAAAGAAAAAGATAAAACCATTGAAGACTAAGAGATC  611
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  540  GGTAGCTTTGAGGCCACCAAAGGCAAAGAATAAGATAAAACCATTGAAGACTAAGAGATC  599

Query  612  AAGAATATGCTTTTTCCTATAATATCTGAACAGATTTCAATAAATAACAAA--CATTTAT  669
            |||| ||||||||||||| |||||| |||||| |||| ||||||||| |||  |||||| 
Sbjct  600  AAGATTATGCTTTTTCCTCTAATATTTGAACAAATTTAAATAAATAAAAAAAACATTTAC  659

Query  670  ATATACTTGTATTTTGATAttttttt  695
            |||||| ||||||| |||||||||||
Sbjct  660  ATATACATGTATTTCGATATTTTTTT  685



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 31108300272


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5