BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G45980.1
Length=1128
Score E
Sequences producing significant alignments: (Bits) Value
Ahg948358 jgi|Araly1|948358|scaffold_800245.1 1448 0.0
> Ahg948358 jgi|Araly1|948358|scaffold_800245.1
Length=1037
Score = 1448 bits (784), Expect = 0.0
Identities = 937/1009 (93%), Gaps = 17/1009 (2%)
Strand=Plus/Plus
Query 6 CATCATCATGTCCTCCTCAAACAAAAATTGGCCAAGCATGTTCAAATCCAAACCTTGCAA 65
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 23 CATCATCATG---TCCTCAAACAAAAATTGGCCAAGCATGTTCAAATCCAAACCTTGCAA 79
Query 66 CAATAATCATCATCATCAACATGAAATCGATACTCCATCTTACATGCACTACTCTAATTG 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 80 CAATAATCATCATCATCAACATGAAATCGATACTCCATCTTACATGCACTACTCTAATTG 139
Query 126 CAACCTATCATCTTCCTTTTCCTCAGATCGGATACCAGATCCTAAACCGAGATGGAATCC 185
||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||
Sbjct 140 CAACCTATCATCTTCCTTTTCTTCAGATCGGGTACCAGATCCTAAACCGAGATGGAACCC 199
Query 186 TAAACCGGAGCAGATTAGGATACTCGAATCAATCTTCAATTCCGGTACTATTAACCCACC 245
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 200 TAAACCGGAGCAGATTCGGATACTCGAATCAATCTTCAATTCCGGTACTGTTAACCCACC 259
Query 246 TAGAGAGGAGATTCAAAGAATCCGGATCCGGCTTCAAGAATATGGTCAAATCGGTGACGC 305
||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||
Sbjct 260 TAGAGAGGAGATTCAAAGAATCCGGATCCGGCTTCAAGAGTACGGTCAAATCGGTGATGC 319
Query 306 AAACGTGTTTTACTGGTTTCAAAACCGGAAATCTCGAGCAAAACACAAGCTTCGTGTTCA 365
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 320 TAATGTGTTTTACTGGTTTCAAAACCGGAAATCTCGAGCAAAACACAAGCTTCGTGTTCA 379
Query 366 TCACAAAAGCCCTAAAATGTCAAAGAAGGACAAGACGGTTATTCCTAGTACTGACGCTGA 425
|||||||| |||||||||||||||||||||||||| ||||||||||| || ||| |||||
Sbjct 380 TCACAAAAACCCTAAAATGTCAAAGAAGGACAAGATGGTTATTCCTAATAATGATGCTGA 439
Query 426 TCATTGTTTTGGTTTTGTTAACCAAGAAACCGGATTATATCCGGTTCAAAACAATGAGTT 485
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 440 TCATTGTTTTGGTTTTGTTAACCAAGAAACCGGATTATTTCCGGTTCAAAACAATGAATT 499
Query 486 GGTGGTAACCGAACCGGCCGGTTTTCTATTTCCGGTTCATAATGATCCGAGCGCTGCTCA 545
||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||
Sbjct 500 GGTGGTAACCGAACCGGCCAGTTTTCTATTCCCGGTTCATAATGATCCGAGCGCAGCTCA 559
Query 546 ATCAGCGTTTGGTTTTGGCGATTTTGTTGTACCGGTGGTAACGGAAGAAGGGATGGCATT 605
||||| |||||||||| | |||||||||||||||||||||||||||||||||||||| ||
Sbjct 560 ATCAGGGTTTGGTTTTAGTGATTTTGTTGTACCGGTGGTAACGGAAGAAGGGATGGCTTT 619
Query 606 CTCTACCGTTAATAACGGCGTTAATTTGGAGACTAACGAAAATTTTGATAAAATTCCGGC 665
|||||||||||||||||||||||||||||||||| | || | ||||||||||||||||||
Sbjct 620 CTCTACCGTTAATAACGGCGTTAATTTGGAGACTGATGACAGTTTTGATAAAATTCCGGC 679
Query 666 GATCAATTTATACGGCGGAGATGGAAATGGCGGTGGAAATTGTTTT-C-C-T----C--C 716
||||||| ||||||| |||||||||||||||||||||||||||||| | | | | |
Sbjct 680 GATCAATCTATACGGAGGAGATGGAAATGGCGGTGGAAATTGTTTTTCTCCTTTGACTGC 739
Query 717 T--TT-GACTGTTCCATTAACCATCAATCAATCTCAAGAAAAACGAGATGTAGGATTATC 773
| || ||||||||||||| |||||||||||||||||||| |||||||| || ||||||
Sbjct 740 TCCTTTGACTGTTCCATTAGCCATCAATCAATCTCAAGAAGAACGAGATATAATATTATC 799
Query 774 CGGTGGTGAAGACGTCGGAGA-TAATGTTTATCCGGTGAGAATGACGGTGTTTATTAACG 832
||||| |||||| || | ||| || ||||| ||||||| |||||||||||||||||||||
Sbjct 800 CGGTGATGAAGATGTTG-AGAATAGTGTTTCTCCGGTGCGAATGACGGTGTTTATTAACG 858
Query 833 AGATGCCTATCGAAGTAGTGTCTGGATTATTCAACGTTAAGGCAGCTTTCGGAAACGATG 892
| |||||| | || |||||| | ||||||||||||||||| |||||||| ||||||||||
Sbjct 859 ACATGCCTTTTGAGGTAGTGCCCGGATTATTCAACGTTAAAGCAGCTTTTGGAAACGATG 918
Query 893 CCGTTTTGATCAACTCGTTTGGCCAGCCTATTCTTACAGATGAATTTGGTGTTACTTATC 952
| |||||||||||||||||||| || ||||||| ||||||||||||||||||||||||||
Sbjct 919 CAGTTTTGATCAACTCGTTTGGGCAACCTATTCATACAGATGAATTTGGTGTTACTTATC 978
Query 953 AACCTCTCCAAAATGGCGCAATCTATTATCTTATTTAGAAGATATTGAA 1001
||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 979 AACCTCTCCAAAACGGGGCAATCTATTATCTTATTTAGAAGATATTGAA 1027
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42049577451
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5