BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G45990.1
Length=2022
Score E
Sequences producing significant alignments: (Bits) Value
Ahg330810 jgi|Araly1|330810|fgenesh1_pm.C_scaffold_8000153 2634 0.0
Ahg929053 jgi|Araly1|929053|scaffold_301510.1 2163 0.0
Ahg947537 jgi|Araly1|947537|scaffold_703766.1 1849 0.0
Ahg323672 jgi|Araly1|323672|fgenesh1_pm.C_scaffold_5001216 1212 0.0
> Ahg330810 jgi|Araly1|330810|fgenesh1_pm.C_scaffold_8000153
Length=2064
Score = 2634 bits (1426), Expect = 0.0
Identities = 1609/1699 (95%), Gaps = 6/1699 (0%)
Strand=Plus/Plus
Query 1 ATGACCGGGAAAGATGCTGAAGTAAAGCTTCCACGGACGACGCGGGTCAAGAACAAGACC 60
|||||||| ||| |||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1 ATGACCGGAAAATATGCGGAAGTAAAGCTTCCACGGACGACACGGGTCAAGAACAAGACT 60
Query 61 CCGGCACCTGTGCAAATCACTGCAGAGCAAATTCTAAGAGAAGCTCGAGAGAGGCAAGAA 120
||||| || ||||||||||| |||||||| ||||||||||||||| |||||||||||||
Sbjct 61 CCGGCCCCGGTGCAAATCACCGCAGAGCAGATTCTAAGAGAAGCTAGAGAGAGGCAAGAG 120
Query 121 GCTGAGATCCGTCCACCTAAGCAGAAAATCACTGATTCTACTGAGCTTTCCGATTACAGA 180
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GCTGAGATCCGTACACCTAAGCAGAAAATCACTGATTCTACTGAGCTTTCCGATTACAGA 180
Query 181 CTCCGACGTCGGAAAGAGTTTGAGGACCAGATCCGTCGAGCGAGATGGAACATCCAAGTT 240
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CTCCGACGTCGGAAGGAGTTTGAGGACCAGATCCGTCGAGCGAGATGGAACATCCAAGTT 240
Query 241 TGGGTCAAATATGCGAAGTGGGAAGAGTCGCAAATGGACTACGCACGTGCTCGAAGCGTG 300
|||||||| |||||| |||||||||||||||||||||| ||||| |||||||| ||||||
Sbjct 241 TGGGTCAAGTATGCGCAGTGGGAAGAGTCGCAAATGGATTACGCGCGTGCTCGGAGCGTG 300
Query 301 TGGGAACGAGCTTTAGAAGGAGAGTACAGGAACCATACGCTTTGGGTCAAGTACGCAGAG 360
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 301 TGGGAACGAGCTTTAGAAGGAGATTACAGGAACCATACGCTTTGGGTCAAGTACGCAGAG 360
Query 361 TTTGAGATGAAGAACAAGTTTGTCAACAATGCAAGGAACGTTTGGGATCGTTCTGTTACG 420
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 361 TTTGAGATGAAGAACAAGTTTGTCAACAATGCAAGGAACGTTTGGGATCGCTCTGTTACG 420
Query 421 CTTCTCCCTCGAGTTGATCAGCTTTGGGAGAAGTATATTTACATGGAAGAGAAGCTTGGG 480
|||||||||||||| || ||||||||| | ||||||| ||||||||| ||||| ||||||
Sbjct 421 CTTCTCCCTCGAGTAGACCAGCTTTGGTACAAGTATAGTTACATGGAGGAGAAACTTGGG 480
Query 481 AATGTTACTGGAGCTAGACAGATCTTCGAGCGGTGGATGAACTGGTCACCAGATCAAAAA 540
||| | | |||||||||||||||||||||||||||||||| ||||| || |||||||||
Sbjct 481 AATATCGCCGGAGCTAGACAGATCTTCGAGCGGTGGATGAATTGGTCGCCGGATCAAAAA 540
Query 541 GCTTGGCTCTGTTTTATTAAGTTTGAACTTAGGTATAACGAAATCGAACGTGCGAGATCG 600
|||||| | ||||||||||| || ||||||| ||||||||||||||||||||||||||||
Sbjct 541 GCTTGGTTTTGTTTTATTAAATTCGAACTTAAGTATAACGAAATCGAACGTGCGAGATCG 600
Query 601 ATATACGAGAGATTTGTTCTTTGTCATCCGAAAGTATCTGCTTTTATTCGATATGCAAAG 660
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 ATATACGAGAGGTTTGTTCTTTGTCATCCGAAAGTATCTGCTTTTATTCGATATGCAAAG 660
Query 661 TTTGAGATGAAGCGTGGTGGTCAAGTTAAGCTAGCTAGGGAGGTTTACGAA-CGAGCAGT 719
|||||||||||||||||||||||||||||||| ||||||||||||||| || || || |
Sbjct 661 TTTGAGATGAAGCGTGGTGGTCAAGTTAAGCTTGCTAGGGAGGTTTAC-AATCGGGCCGC 719
Query 720 GGACAAACTTGCAAACGATGAAGAAGCTGAGATTCTCTTTGTATCGTTTGCTGAATTCGA 779
|||| | ||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 720 GGACGAGCTTGCAAACGACGAAGAAGCTGAGATTCTCTTTGTAGCGTTTGCTGAATTCGA 779
Query 780 AGAACGATGCAAGGAAGTAGAGCGGGCTAGGTTTATCTACAAGTTTGCTCTTGATCATAT 839
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 780 AGAGCGATGCAAGGAAGTAGAGCGGGCTAGGTTTATCTACAAGTTTGCTCTTGATCGTAT 839
Query 840 TCGTAAAGGAAGAGCTGAGGAGTTGTACAAGAAGTTTGTGGCGTTTGAGAAACAGTATGG 899
|| |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 840 TCCTAAAGGAAGAGCTGAGGATTTGTACAAGAAGTTTTTGGCGTTTGAGAAACAGTATGG 899
Query 900 AGATAAGGAAGGTATTGAGGATGCTATTGTTGGGAAGAAGAGGTTTGAGTATGAAGATGA 959
||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 900 TGATAATGAAGGTATTGAGGATGCTATTGTTGGGAAGAAGAGCTTTCAGTATGAAGATGA 959
Query 960 AGTGAGTAAAAACCCTTTGAACTATGACTCATGGTTCGATTATGTTAGGCTGGAAGAGAG 1019
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 960 AGTGAGTAAAAACCCTTTGAACTATGACTCGTGGTTCGATTATGTTAGGTTGGAAGAGAG 1019
Query 1020 TGTTGGGAACAAAGATAGGATAAGAGAAATCTATGAGAGGGCTATTGCTAATGTTCCACC 1079
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1020 TGTAGGGAACAAAGATAGGATCAGAGAAATCTATGAGAGGGCTATTGCTAATGTTCCACC 1079
Query 1080 TGCCCAAGAGAAACGATTCTGGCAAAGATACATTTATCTTTGGATTAATTATGCTTTGTA 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 TGCCCAAGAGAAACGATTCTGGCAAAGATACATTTATCTTTGGATTAATTATGCTTTGTA 1139
Query 1140 TGAAGAGATTGAAACTAAAGATGTGGAA-CGTACACGAGATGTTTACAGAGAATGTCTCA 1198
||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||
Sbjct 1140 TGAAGAGATTGAAACTAAAGATGTG-AAGCGTACACGAGATGTTTACAGAGAATGCCTCA 1198
Query 1199 AGCTTATCCCACACACCAAATTTTCTTTTGCCAAAATATGGTTGCTCGCTGCAGAATATG 1258
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1199 AGCTTATCCCACACACCAAATTTTCTTTTGCCAAAATATGGTTGCTGGCTGCAGAATATG 1258
Query 1259 AAATCAGGCAATTGAATCTCACCGGTGCACGGCAGATATTAGGTAATGCGATTGGGAAAG 1318
||||||||||||||||||| || || ||||| | || ||||| ||||||||||||||||
Sbjct 1259 AAATCAGGCAATTGAATCTTACGGGCACACGGAAAATTTTAGGAAATGCGATTGGGAAAG 1318
Query 1319 CTCCAAAAGTTAAGATATTCAAGAAATACATTGAGATGGAACTCAAGTTGGTAAACATCG 1378
||||||||| ||||||||||||||||||||||||||| |||||| |||||| ||||||||
Sbjct 1319 CTCCAAAAGATAAGATATTCAAGAAATACATTGAGATTGAACTCCAGTTGGGAAACATCG 1378
Query 1379 ATAGATGTAGAAAATTATACGAGCGGTTTCTTGAATGGTCTCCTGAGAATTGCTATGCTT 1438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 ATAGATGTAGAAAATTATACGAGCGGTTTCTTGAATGGTCTCCTGAGAATTGCTATGCTT 1438
Query 1439 GGAGAAACTATGCTGAGTTTGAGATTTCGCTTGCTGAAACAGAACGTGCTAGAGCTATCT 1498
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1439 GGAGAAACTATGCTGAGTTTGAGATTTCTCTTGCTGAAACAGAACGAGCTAGAGCTATCT 1498
Query 1499 TTGAACTTGCAATATCTCAGCCTGCTCTAGACATGCCTGAGCTGCTTTGGAAGACGTACA 1558
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1499 TTGAGCTTGCAATATCTCAGCCTGCTCTAGACATGCCTGAGCTGCTTTGGAAGACGTACA 1558
Query 1559 TTGATTTTGAGATATCAG-AAGGGGAATTCGAGAAGACACGGGCTTTATATGAGCGACTC 1617
|||||||||||||||| | |||||||||| |||| |||||||||||||||||||||||||
Sbjct 1559 TTGATTTTGAGATATC-GCAAGGGGAATTAGAGAGGACACGGGCTTTATATGAGCGACTC 1617
Query 1618 TTGGACCGTACAAAGCATTGCAAGGTGTGGATTAGCTTTGCAAAGTTCGAAGCTTCTGCT 1677
|||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 1618 TTGGACCGTACAAAGCATTGCAAGGTGTGGGTTAGCTTTGCAAAGTTTGAAGCTTCTGCT 1677
Query 1678 TCAGAACACAAAGAAGACG 1696
| ||||||||||||||||
Sbjct 1678 GCGGAACACAAAGAAGACG 1696
Score = 479 bits (259), Expect = 4e-134
Identities = 314/341 (92%), Gaps = 2/341 (1%)
Strand=Plus/Plus
Query 1681 GAACACAAAGAAGACGGCATCAAAAGCGCCAGAGTGATCTTCGACAGAGCCAATACATAC 1740
|||| |||| |||||||||||| | ||||||||| ||||||||| |||||||| ||||||
Sbjct 1723 GAACGCAAAAAAGACGGCATCAGACGCGCCAGAGCGATCTTCGATAGAGCCAACACATAC 1782
Query 1741 TACAAAGACACCACACCGGAGCTTG-AAGAAGAGCGTGCTACGCTTTTGGAGGATTGGCT 1799
||||||||| ||||||| |||| || ||||||||||||||||||||||||||||||||||
Sbjct 1783 TACAAAGACTCCACACCAGAGC-TGAAAGAAGAGCGTGCTACGCTTTTGGAGGATTGGCT 1841
Query 1800 TAACATGGAGACAGGCTTTGGTGAGCTCGGGGATGTTAGTGTCGTTCAATCAAAGCTCCC 1859
||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 1842 TAACATGGAGACAGGCTTTGGTGAGCTCGGGCATGTTAGTGTCGTTCAATCGAAGCTCCC 1901
Query 1860 GAAGAAGCTCAAGAAGAGAAAGATGACCAGTAGAGAAGACGGCTCTACAGAGTATGAAGA 1919
|||||||||||||||||||||| | |||||||||||||||| |||||||||||||||||
Sbjct 1902 GAAGAAGCTCAAGAAGAGAAAGCTAACCAGTAGAGAAGACGTTTCTACAGAGTATGAAGA 1961
Query 1920 ATACTTTGATTATCTGTTCCCTGAAGAATCAGGGACGACGAATCTCAAGATTCTTGAAGC 1979
|||| |||||||| |||| || ||||||||| |||||||||||| ||||||||||||||
Sbjct 1962 ATACATTGATTATTTGTTTCCGGAAGAATCACAGACGACGAATCTTAAGATTCTTGAAGC 2021
Query 1980 TGCTTATAAATGGAAGAAGCTTAAAGGTGAGGAATGCGTCT 2020
|||||||||||||||||||||||||| || |||||| ||||
Sbjct 2022 TGCTTATAAATGGAAGAAGCTTAAAGCTGGGGAATGTGTCT 2062
> Ahg929053 jgi|Araly1|929053|scaffold_301510.1
Length=2149
Score = 2163 bits (1171), Expect = 0.0
Identities = 1533/1708 (90%), Gaps = 24/1708 (1%)
Strand=Plus/Plus
Query 1 ATGACCGGGAAAGATGCTGAAGTAAAGCTTCCACGGACGACGCGGGTCAAGAACAAGACC 60
|||||| ||| ||||| ||||| |||||||||||||||||||| ||||||||||||||
Sbjct 63 ATGACCCTGAAGGATGCGGAAGTGAAGCTTCCACGGACGACGCGAGTCAAGAACAAGACT 122
Query 61 CCGGCACCTGTGCAAATCACTGCAGAGCAAATTCTAAGAGAAGCTCGAGAGAGGCAAGAA 120
||||| || || |||||||| || ||||| |||||||| || |||||||||||||||| |
Sbjct 123 CCGGCGCCGGTCCAAATCACCGCGGAGCAGATTCTAAGGGAGGCTCGAGAGAGGCAAG-A 181
Query 121 G-CTGAGATCCGTCCACCTAAGCAGAAAATCACTGATTCTACTGAGCTTTCCGA-TTACA 178
| ||||||||||||| ||||| |||| ||||||||| || |||||||||||||| || ||
Sbjct 182 GCCTGAGATCCGTCCGCCTAATCAGAGAATCACTGAATCGACTGAGCTTTCCGACTT-CA 240
Query 179 GACTCCGACGTCGGAAAGAGTTTGAGGACCAGATCCGTCGAGCGAGATGGAACATCCAAG 238
|||||||||||||||| || ||||||||||||||||| || ||||||| ||| | |||||
Sbjct 241 GACTCCGACGTCGGAAGGATTTTGAGGACCAGATCCGCCGTGCGAGATTGAATACCCAAG 300
Query 239 TTTGGGTCAAATATGCGAAGTGGGAAGAGTCGCAAATGGACTACGCA-CGTGCTCGAAGC 297
||||||||| ||||||| |||||||||| ||||| ||||| ||| | ||||||||||||
Sbjct 301 TTTGGGTCAGATATGCGCAGTGGGAAGAATCGCAGATGGATTAC-AAGCGTGCTCGAAGC 359
Query 298 GTGTGGGAACGAGCTTTAGAAGGAG-AG--TACAGGAACCATACGCTTTGGGTCAAGTAC 354
|||||||||||||| |||||||||| || ||| ||| ||| ||||| |||||||||| |
Sbjct 360 GTGTGGGAACGAGCCTTAGAAGGAGAAGCTTACCGGAGCCACACGCTCTGGGTCAAGTTC 419
Query 355 GCAGAGTTTGAGATGAAGAACAAGTTTGTCAAC-AATGCAAGGAACGTTTGGGATCGTTC 413
|| |||||||||||||||||||||||||||||| || || |||||||||||||||||| |
Sbjct 420 GCCGAGTTTGAGATGAAGAACAAGTTTGTCAACGAA-GCGAGGAACGTTTGGGATCGTGC 478
Query 414 TGTTACGCTTCTCCCTCGAGTTGATCAGCTTTGGGAG-AAGTATATTTACATGGAAGAGA 472
||||||| | ||||||||||| || ||||||| || | || ||||| ||||||||||||
Sbjct 479 TGTTACGATCCTCCCTCGAGTAGACCAGCTTT-GGCGCAATTATATCCACATGGAAGAGA 537
Query 473 AGCTTGGGAATGTTACTGGAGCTAGACAGATCTTCGAGCGGTGGAT-GAACTGGTCACCA 531
| ||||||||| || | |||| |||| |||| |||||||||||||| || | |||||||
Sbjct 538 AACTTGGGAATATTGCCGGAGTTAGAGAGATATTCGAGCGGTGGATCGATC-GGTCACCG 596
Query 532 GATCAAAAAGCTTGGCTCTGTTTTATTAAGTTTGAACTTAGGTATAACGAAATCGAACGT 591
|||||| ||||||||||||| ||||| || || ||||||| |||||| || |||||||||
Sbjct 597 GATCAACAAGCTTGGCTCTGCTTTATCAAATTCGAACTTAAGTATAATGATATCGAACGT 656
Query 592 GCGAGATCGATATACGAGAGATTTGTTCTTTGTCATCCGAAA-GTATCTGCTTTTATTCG 650
|| ||||| || |||||||||||||||||||||||||| ||| || ||||||| ||||||
Sbjct 657 GCAAGATCCATTTACGAGAGATTTGTTCTTTGTCATCC-AAATGTTTCTGCTTATATTCG 715
Query 651 ATATGCAAAGTTTGAGATGAAGCGTGGTGGTCAAGTTAAGCTAGCTAGGGAGGT-TTACG 709
||||||||||||||||||||||| ||||||||||| |||| |||||| | || || ||
Sbjct 716 ATATGCAAAGTTTGAGATGAAGC---GTGGTCAAGTTGAGCTCGCTAGGAAAGTGTT-CG 771
Query 710 AACGAGCAGTGGACAAACTTGCAAACGATGAAGAAGCTGAGATTCTCTTTGTATCGTTTG 769
|||| || | | | |||||| |||||||||||||||||||||||||||| ||||||
Sbjct 772 AACGCGCCCAGAAGGAGCTTGCAGACGATGAAGAAGCTGAGATTCTCTTTGTGGCGTTTG 831
Query 770 CTGAATTCGAAGAACGATGCAAGGAAGTAGAGCGGGCTAGGTTTATCTACAAGTTTGCTC 829
||||||| ||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 832 CTGAATTTGAAGAACAATGCAAGGAAGTAGAGCGAGCTAGGTTTATCTACAAGTTTGCTC 891
Query 830 TTGATCATATTCGTAAAGGAAGAGCTGAGGAGTTGTACAAG-AAGTTTGTGGCGTTTGAG 888
||||||| |||| ||||||||||||||| | |||||| || ||||||||||||||||||
Sbjct 892 TTGATCAGATTCCTAAAGGAAGAGCTGAAAATTTGTAC-AGCAAGTTTGTGGCGTTTGAG 950
Query 889 AAACAGTATGGAGATAAGGAAGGTATTGAGGATGCTATTGTTGGGAAGAAGAGGTTTGAG 948
|||||| |||| ||||||||||| ||||||||||| ||| ||||||||| ||||||| ||
Sbjct 951 AAACAGAATGGGGATAAGGAAGGGATTGAGGATGCCATTATTGGGAAGAGGAGGTTTCAG 1010
Query 949 TATGAAGATGAAGTGAGTAAAAACCCTTTGAACTATGACTCATGGTTCGATTATGTTAGG 1008
|||||||||||||||||||| ||||||||||||||||| || ||||||||||| |||||
Sbjct 1011 TATGAAGATGAAGTGAGTAAGAACCCTTTGAACTATGATTCGTGGTTCGATTACCTTAGG 1070
Query 1009 CTGGAAGAGAGTGTTGGGAACAAAGATAGGATAAGAGAAATCTATGAGAGGGCTATTGCT 1068
| ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1071 TTAGAAGAGACTGTTGGGAACAAAGATAGGATAAGAGAAATATATGAGAGGGCTATTGCT 1130
Query 1069 AATGTTCCACCTGCCCAAGAGAAACGATTCTGGCAAAGATACATTTATCTTTGGATTAAT 1128
|||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||||| |
Sbjct 1131 AATGTTCCACCTGCTCAAGAGAAACGATACTGGCAAAGATACATATATCTTTGGATTAGT 1190
Query 1129 TATGCTTTGTATGAAGAGATTGAAACTAAAGATGTGGAACGTACACGAGATGTTTACAGA 1188
||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||
Sbjct 1191 TATGCTTTGTATGAAGAGATTGAAACTGAAGATGTGGAGCGTACCCGAGATGTTTACAGA 1250
Query 1189 GAATGTCTCAAGCTTATCCCACACACCAAATTTTCTTTTGCCAAAATATGGTTGCTCGCT 1248
| ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1251 GCATGCCTCAAGCTTATCCCCCACACCAAATTTTCTTTTGCCAAAATATGGTTGCTCGCT 1310
Query 1249 GCAGAATATGAAATCAGGCAATTGAATCTCACCGGTGCACGGCAGATATTAGGTAATGCG 1308
||| || |||||||||||||||| |||||||| |||||||| ||||||||||| ||||||
Sbjct 1311 GCACAACATGAAATCAGGCAATTAAATCTCACGGGTGCACGACAGATATTAGGAAATGCG 1370
Query 1309 ATTGGGAAAGCTCCAAAAGTTAAGATATTCAAGAAATACATTGAGATGGAACTCAAGTTG 1368
||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||
Sbjct 1371 ATTGGGAAAGCTCCAAAAGAGAAGATATTCAAGAAATACATTGAGATCGAACTCCAGTTG 1430
Query 1369 GTAAACATCGATAGATGTAGAAAATTATACGAGCGGTTTCTTGAATGGTCTCCTGAGAAT 1428
| ||| || |||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 1431 GGAAATATAGATAGATGTAGAAAGTTATACGAGCGGTATCTTGAATGGTCTCCTGAGAAT 1490
Query 1429 TGCTATGCTTGGAGAAACTATGCTGAGTTTGAGATTTCGCTTGCTGAAACAGAACGTGCT 1488
|||||||||||||||||||||||||||||||| || || ||||||||||||||||| |||
Sbjct 1491 TGCTATGCTTGGAGAAACTATGCTGAGTTTGAAATGTCTCTTGCTGAAACAGAACGAGCT 1550
Query 1489 AGAGCTATCTTTGAACTTGCAATATCTCAGCCTGCTCTAGACATGCCTGAGCTGCTTTGG 1548
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1551 AGAGCTATCTTTGAACTTGCAATATCTCAGCCTGCTCTAGACATGCCCGAGCTGCTATGG 1610
Query 1549 AAGACGTACATTGATTTTGAGATATCAGAAGGGGAATTCGAGAAGACACGGGCTTTATAT 1608
|||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 1611 AAGACGTACATTGATTTTGAGATATCAGAAGGGGAATTAGAGAGGACACGGGCTTTATAT 1670
Query 1609 GAGCGACTCTTGGACCGTACAAAGCATTGCAAGGTGTGGATTAGCTTTGCAAAGTTCGAA 1668
||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||
Sbjct 1671 GAGAGACTCTTGGACCGTACAAAACATTGCAAGGTGTGGGTTAGCTTTGCAAAGTTTGAA 1730
Query 1669 GCTTCTGCTTCAGAACACAAAGAAGACG 1696
||||||||| | ||||||||| ||||||
Sbjct 1731 GCTTCTGCTGCGGAACACAAAAAAGACG 1758
Score = 401 bits (217), Expect = 8e-111
Identities = 288/322 (89%), Gaps = 6/322 (2%)
Strand=Plus/Plus
Query 1681 GAACACAAAGAAGACGGCATCAAAAGCGCCAGAGTGATCTTCGACAGAGCCAATACATAC 1740
|||| |||| |||||| ||||| | || |||||| ||||||||| |||||||| ||||||
Sbjct 1779 GAACGCAAAAAAGACGACATCAGACGCTCCAGAGCGATCTTCGATAGAGCCAACACATAC 1838
Query 1741 TACAAAGACACCACACCGGAGCTTG-AAGAAGAGCGTGCTACGCTTTTGGAGGATTGGCT 1799
|||||||||| ||||| |||| || || |||||||||||| ||||||||||||||||||
Sbjct 1839 TACAAAGACAAAACACCAGAGC-TGAAAAAAGAGCGTGCTATGCTTTTGGAGGATTGGCT 1897
Query 1800 TAACATGGAGACAGGCTTTGGTGA-GCTCGGGGATGTTAGTGTCGTTCAATC-AAAGCTC 1857
|||||||||||| ||||||||| | ||||||||||||||||||||||||||| ||| |||
Sbjct 1898 TAACATGGAGACGGGCTTTGGT-ATGCTCGGGGATGTTAGTGTCGTTCAATCGAAA-CTC 1955
Query 1858 CCGAAGAAGCTCAAGAAGAGAAAGATGACCAGTAGAGAAGACGGCTCTACAGAGTATGAA 1917
|||||||||||||||||||||||| ||| |||||||||||| |||||||| |||||||||
Sbjct 1956 CCGAAGAAGCTCAAGAAGAGAAAGCTGAGCAGTAGAGAAGATGGCTCTACCGAGTATGAA 2015
Query 1918 GAATACTTTGATTATCTGTTCCCTGAAGAATCAGGGACGACGAATCTCAAGATTCTTGAA 1977
|||| | |||||||| |||| || ||||||||| |||||||||||| |||||| |||||
Sbjct 2016 GAATTCATTGATTATTTGTTTCCAGAAGAATCACAGACGACGAATCTTAAGATTGTTGAA 2075
Query 1978 GCTGCTTATAAATGGAAGAAGC 1999
||||||||||||||||||||||
Sbjct 2076 GCTGCTTATAAATGGAAGAAGC 2097
> Ahg947537 jgi|Araly1|947537|scaffold_703766.1
Length=2156
Score = 1849 bits (1001), Expect = 0.0
Identities = 1480/1711 (86%), Gaps = 33/1711 (2%)
Strand=Plus/Plus
Query 1 ATGAC-CGGGAAAGATGCTGAAGTAAAGCTTCCACGGA-CGACGCGGGTCAAGAACAAGA 58
||||| | |||||||| | ||||| ||||||||| || | || || ||||||||||| |
Sbjct 63 ATGACTC-GGAAAGATACAGAAGTCAAGCTTCCA-AGACCTACTCGTGTCAAGAACAAAA 120
Query 59 CCCCGGCACCTGTGCAAATCACTGCAGAGCAAATTCTAAGAGAAGCTCGAGAGAGGCAAG 118
| ||||| || ||||||||||| || || || ||| ||||||||||||||||||| ||||
Sbjct 121 CTCCGGCGCCGGTGCAAATCACCGCCGAACAGATTTTAAGAGAAGCTCGAGAGAGACAAG 180
Query 119 AAGCTGAGATCCGTCCACCTAAGCAGAAAATCACTGATTCTACTGAGCTTTCCGATTACA 178
|||||||||||||||| |||||||| |||||||||||||| |||||||||||||| ||||
Sbjct 181 AAGCTGAGATCCGTCCTCCTAAGCAAAAAATCACTGATTCCACTGAGCTTTCCGACTACA 240
Query 179 GACTCCGACGTCG-GAAA-GAGTTTGAGGACCAGATCCGTCGAGCGAGATGGAACATCCA 236
||||||| || | |||| || ||||| |||||||||||||| || ||||||||||| ||
Sbjct 241 GACTCCGCCG--GAGAAAGGAATTTGAAGACCAGATCCGTCGCGCTAGATGGAACATTCA 298
Query 237 AGTTTGGGTCAAATATGC-GAAGTGGGAAGAGTCGCA-AATGGACTACGCACGTGCTCGA 294
||||||||||| || || || ||||||||||| || || || ||||| |||||||||
Sbjct 299 TGTTTGGGTCAAGTACGCTCAA-TGGGAAGAGTCACAGAA-AGATTACGCTCGTGCTCGA 356
Query 295 AGCGTGTGGGAACGAGCTTTAGAAGGAGAGTACAGGAACCATACGCTTTGGGTCAAGTAC 354
|| || ||||||||||| |||||||||| ||||||||||||||||||||| |||| |||
Sbjct 357 AGTGTTTGGGAACGAGCCATAGAAGGAGATTACAGGAACCATACGCTTTGGCTCAAATAC 416
Query 355 GCAGAGTTTGAGATGAAGAACAAGTTTGTCAACAATGCAAGGAACGTTTGGGATCGTTCT 414
|| ||||||||||||||||||||||| || |||| ||| || |||||||||||||| ||
Sbjct 417 GCTGAGTTTGAGATGAAGAACAAGTTCGTGAACAGTGCGAGAAACGTTTGGGATCGAGCT 476
Query 415 GTTACGCTTCTCCCTCGAGTTGATCAGCTTTGGGAGAAGTATATTTACATGGAAGAGA-A 473
||||||||||| ||||| || || ||||||||| | ||||||||| | ||||| |||| |
Sbjct 477 GTTACGCTTCTTCCTCGTGTAGACCAGCTTTGGTACAAGTATATTCATATGGAGGAGATA 536
Query 474 GCTTGGGAATGTTACTGGAGCTAGACAGATCTTCGAGCGGTGGATGAACTGGTCACCAGA 533
||||||||| | | |||||||| ||||| || || ||||||||| | |||||||| ||
Sbjct 537 -CTTGGGAATATCGCCGGAGCTAGGCAGATTTTTGAACGGTGGATGGATTGGTCACCGGA 595
Query 534 TCAAAAAGCTTGGCTCT-GTTTTATTAAGTTTGAACTTAGGTATAACGAAATCGAACGTG 592
|||| ||| |||||||| | |||||||| || |||||||||||||| ||||||||||| |
Sbjct 596 TCAACAAGGTTGGCTCTCG-TTTATTAAATTCGAACTTAGGTATAATGAAATCGAACGGG 654
Query 593 CGAGATCGATATACGAGAGATTTGTTCTTTGTCATCCGAAAGTATCTGCTTTTATTCGAT 652
| ||| ||||||||||||||||||| |||||||||||||| || ||||||| |||| |||
Sbjct 655 CTAGAACGATATACGAGAGATTTGTGCTTTGTCATCCGAAGGTTTCTGCTTATATTAGAT 714
Query 653 ATGCAAAGTTTGAGATG-AAGCGTGGTGGTCAAGTTAAGC-TAGCTAGGGAG-GTTTACG 709
|||| |||||||||||| ||| ||||| | ||||| || | | || |||| || || |
Sbjct 715 ATGCTAAGTTTGAGATGAAAG-GTGGT-G--AAGTTGCGCGTTG-TA-GGAGTGTGTATG 768
Query 710 AACGAGC-AGTGGACAAACTTGCAAACGATGAAGAAGCTGAG-ATTCTCTTTGTATCGTT 767
|||| || | || || ||||| | ||||||||||||||| | |||||||| ||||
Sbjct 769 AACGTGCTA-CAGAGAAGCTTGCTGATGATGAAGAAGCTGAGCA-GCTCTTTGTGGCGTT 826
Query 768 TGCTGAATTCGAAGAACGATGCAAGGAAGTAGAGCGGGCTAGGTTTATCTACAAGTTTGC 827
||| || || ||||||||||| ||||||||||| |||||||||||||||| ||||||||
Sbjct 827 TGCGGAGTTTGAAGAACGATGTAAGGAAGTAGAAAGGGCTAGGTTTATCTATAAGTTTGC 886
Query 828 TCTTGATCATATTCGTAAAGGAAGAGCTGAGGAGTTGTACAAGAAGTTTGTGGCGTTTGA 887
|||||||||||||| |||||||||||||||||| ||||| | |||||||||||| |||||
Sbjct 887 TCTTGATCATATTCCTAAAGGAAGAGCTGAGGATTTGTATAGGAAGTTTGTGGCTTTTGA 946
Query 888 GAAACAGTATGGAGATAAGGAAGGTATTGAGGATGCTATTGTTGGGAAGAAGAGGTTTGA 947
||| |||||||| ||||||||||| ||||||||||| ||||||||||||| ||||||| |
Sbjct 947 GAAGCAGTATGGTGATAAGGAAGGGATTGAGGATGCCATTGTTGGGAAGAGGAGGTTTCA 1006
Query 948 GTATGAAGATGAAGTGAGTAAAAACCCTTTGAACTATGACTCATGGTTCGATTATGTTAG 1007
||||||||| |||||||| || || |||| |||||||| || ||||| |||||||||||
Sbjct 1007 GTATGAAGAGGAAGTGAGGAAGAATCCTTCAAACTATGATTCGTGGTTTGATTATGTTAG 1066
Query 1008 GCTGGAAGAGAGTGTTGGGAACAAAGATAGGATAAGAGAAATCTATGAGAGGGCTATTGC 1067
| | ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1067 GTTAGAAGAGAGTGTGGGGAACAAAGATAGGATCAGAGAAATCTATGAGAGGGCTATTGC 1126
Query 1068 TAATGTTCCACCTGCCCAAGAGAAACGATTCTGGCAAAGATACATTTATCTTTGGATTAA 1127
||||||||||||||| | |||||||||| |||||||||||| || ||||||||||||||
Sbjct 1127 TAATGTTCCACCTGCTGAGGAGAAACGATACTGGCAAAGATATATCTATCTTTGGATTAA 1186
Query 1128 TTATGCTTTGTATGAAGAGATTGAAACTAAAGATGTGGAACGTACACGAGATGTTTACAG 1187
|||||| ||||| ||||||||||||||| ||||||| || ||||| |||||||| |||||
Sbjct 1187 TTATGCATTGTACGAAGAGATTGAAACTGAAGATGTTGAGCGTACCCGAGATGTATACAG 1246
Query 1188 AGAATGTCTCAAGCTTATCCCACACACCAAATTTTCTTTTGCCAAAATATGGTTGCTCGC 1247
||| || || ||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 1247 AGAGTGCCTTAAGCTTATCCCCCACAGCAAATTTTCTTTTGCCAAAATATGGTTGCTCGC 1306
Query 1248 TGCAGAATATGAAATCAGGCAATTGAATCTCACCGGTGCACGGCAGATATTAGGTAATGC 1307
||| | | ||| || ||||||||||||||||| ||||| || ||||||||||| |||||
Sbjct 1307 TGCTCAGTTTGAGATAAGGCAATTGAATCTCACGGGTGCTCGCCAGATATTAGGAAATGC 1366
Query 1308 GATTGGGAAAGCTCCAAAAGTTAAGATATTCAAGAAATACATTGAGATGGAACT-CAAGT 1366
|||||| |||||||| |||| ||||||||||||||||||||||||||| || || || ||
Sbjct 1367 GATTGGAAAAGCTCCCAAAGATAAGATATTCAAGAAATACATTGAGATCGAGCTTCA-GT 1425
Query 1367 TGGTAAACATCGATAGATGTAGAAAATTATACGAGCGGTTTCTTGAATGGTCTCCTGAGA 1426
||| |||||| ||||| |||||||| ||||| || |||| |||||| |||||||||||||
Sbjct 1426 TGGGAAACATGGATAGGTGTAGAAAGTTATATGAACGGTATCTTGAGTGGTCTCCTGAGA 1485
Query 1427 ATTGCTATGCTTGGAGAAACTATGCTGAGTTTGAGATTTCGCTTGCTGAAACAGAACGTG 1486
|||||||||||||||| || |||||||| || |||| || |||| |||||| ||||| |
Sbjct 1486 ATTGCTATGCTTGGAGCAAGTATGCTGAATTAGAGAGGTCTCTTGTTGAAACCGAACGAG 1545
Query 1487 CTAGAGCTATCTTTGAACTTGCAATATCTCAGCCTGCTCTAGACATGCCTGAGCTGCTTT 1546
|||||||||| ||||||||||||||||| ||||| ||||| ||||||||||||||||| |
Sbjct 1546 CTAGAGCTATTTTTGAACTTGCAATATCCCAGCCAGCTCTTGACATGCCTGAGCTGCTAT 1605
Query 1547 GGAAGACGTACATTGATTTTGAGATATCAGAAGGGGAATTCGAGAAGACACGGGCTTTAT 1606
||||| | |||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 1606 GGAAGGCCTACATTGATTTTGAGATATCAGAAGGGGAATTAGAGAGGACACGGGCTTTAT 1665
Query 1607 ATGAGCGACTCTTGGACCGTACAAAGCATTGCAAGGTGTGGATTAGCTTTGCAAAGTTCG 1666
|||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||| |
Sbjct 1666 ATGAGCGACTCTTGGACCGTACTAAGCATTACAAGGTGTGGGTTAGCTTTGCAAAGTTTG 1725
Query 1667 AAGCTTCTGCTTCAGAACACA-AAGAAGACG 1696
||||||||||| | ||| | | |||||||||
Sbjct 1726 AAGCTTCTGCTGCGGAA-ATAGAAGAAGACG 1755
> Ahg323672 jgi|Araly1|323672|fgenesh1_pm.C_scaffold_5001216
Length=1869
Score = 1212 bits (656), Expect = 0.0
Identities = 1077/1278 (84%), Gaps = 37/1278 (3%)
Strand=Plus/Plus
Query 739 GAAGAAGCTGAGATTCTCTTTGTATCGTTTGCTGAATTCGAAGAACGATGCAAGGAAGTA 798
|||||||||||||| ||||||| | |||||||| || |||||| | ||||| |||||
Sbjct 592 GAAGAAGCTGAGATGATCTTTGTGGCCTTTGCTGAGTTTGAAGAAGGGTGCAAAGAAGTG 651
Query 799 GAGCGGGCTAGGTTTATCTACAAGTTTGCTCTTGATCATATTCGTAAAGGAAGAGCTGAG 858
|| |||||||||||| | ||||||||||||||||||||||| | ||||||||||||||||
Sbjct 652 GAACGGGCTAGGTTTCTTTACAAGTTTGCTCTTGATCATATCCCTAAAGGAAGAGCTGAG 711
Query 859 GAGTTGTACAAGAAGTTTGTGGCGTTTGAGAAACAGTATGGAGATAAGGAAGGTATTGAG 918
|| ||||| || ||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 712 GATTTGTATAACAAGTTTGTGGCGTTTGAGAAACAGTATGGGGATAAGGAAGGGATTGAT 771
Query 919 GATGCTATTGTTGGGAAGAAG-AGGTTTGAGTATGAAGATGAAGTGAGTAAAAACCCTTT 977
||||| |||||||| ||| || | | || |||||||| ||||||||| || ||||||||
Sbjct 772 GATGCCATTGTTGGCAAG-AGAAAGCTTCTGTATGAAGGTGAAGTGAGGAAGAACCCTTT 830
Query 978 GAACTATGACTCATGGTTCGATTATGTTAGGCTGGAAGAGAGTGTT-GGGAACAAAGATA 1036
||||||||| || ||||||||||| ||||| |||| |||| | || ||||| |||||||
Sbjct 831 GAACTATGATTCCTGGTTCGATTACATTAGGTTGGAGGAGACT-TTGGGGAATAAAGATA 889
Query 1037 GGATAAGAGAAATCTATGAGAGGGCTATTGCTAATGTTCCACCTGCCCAAGAGAAACGAT 1096
|||| ||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 890 GGATCAGAGATCTCTATGAGAGGGCTATTGCTAATGTTCCACCCGCCCAGGAGAAACGAT 949
Query 1097 TCTGGCAAAGATACATTTATCTT-TGGATTAATTATGCTTTGTATGAAGAGATTGAAACT 1155
|||||| ||||| || || ||| |||||| ||||||| ||| ||||||||||| | ||
Sbjct 950 ACTGGCAGAGATATATCTA-CTTGTGGATTGATTATGCACTGTTTGAAGAGATTGTAGCT 1008
Query 1156 AAAGATGTGGAACGTACACGAGATGTTTACAGAGAATGTCT-CAAGCTTATCCCACACAC 1214
|||| ||||| ||||| |||| ||| ||||||||||| || | ||||||||| ||| |
Sbjct 1009 GAAGACGTGGAGCGTACTCGAGCTGTGTACAGAGAATGCCTTCT-GCTTATCCCGCACTC 1067
Query 1215 CAAATTTTCTTTTGCCAAAATATGGTTGCTCGCTGCAGAATATGAAATCAGGCAATTGAA 1274
|||||| ||||||||||| |||||||||||||||||| | | ||| ||||||||| ||||
Sbjct 1068 CAAATTCTCTTTTGCCAAGATATGGTTGCTCGCTGCACAGTTTGAGATCAGGCAACTGAA 1127
Query 1275 TCTCACCGGTGCACGGCAGATATTAGGTAATGCGATTGGGAAAGCTCCAAAAGT-TAAGA 1333
|||| ||||||| |||||||||||||| || || ||||| ||||||||||| | |||||
Sbjct 1128 TCTCTCCGGTGCTCGGCAGATATTAGGAAACGCCATTGGCAAAGCTCCAAA-GCATAAGA 1186
Query 1334 TATTCAAGAAATACATTGAGATGGAACTCAAG-TTGGTAAACATCGATAGATGTAGAAAA 1392
| |||||||||||||||||||| |||||| | |||| |||||| |||||||||||||||
Sbjct 1187 TTTTCAAGAAATACATTGAGATCGAACTCC-GCTTGGGAAACATAGATAGATGTAGAAAA 1245
Query 1393 TTATACGA-GCGGTTTCTTGAATGGTCTCCTGAGAATTGCTATGCT-TGGAGAAAC-TAT 1449
| ||| | ||||| |||||||||||||||||||| |||||||| | | ||| | |
Sbjct 1246 CTGTAC-ACGCGGTATCTTGAATGGTCTCCTGAGAGTTGCTATGGTATCTTGAATGGTCT 1304
Query 1450 GCTGAGT-TTGAGATTTCGCTTGCTGAAACAGAACGTGCTAGAGCTATCTTTGAACTTGC 1508
||||| ||| || ||||| || || |||| ||||||||||| |||||||||||
Sbjct 1305 CCTGAGAGTTGCTAT---GCTTG--GAT-CAAAACGAGCTAGAGCTATTTTTGAACTTGC 1358
Query 1509 AATATCTCAGCCTGCTCTAGACATGCCTGAGCTGCTTTGGAAGACGTACATTGATTTTGA 1568
|||||||||||||| ||| |||| || |||||||| |||||| | ||||||||||||||
Sbjct 1359 AATATCTCAGCCTGTTCTTGACACCCCCGAGCTGCTATGGAAGGCATACATTGATTTTGA 1418
Query 1569 GATATCAGAAGGGGAATTCGAGAAGACACGGGCTTTATATGAGCGACTCTTGGACCGTAC 1628
||||||| ||||||||| |||| |||||| |||||||||||||||||||||||||||||
Sbjct 1419 GATATCACTAGGGGAATTAGAGAGGACACGAGCTTTATATGAGCGACTCTTGGACCGTAC 1478
Query 1629 AAAGCATTGCAAGGTGTGGATTAGCTTTGCAAAGTTCGAAGCTTCTGCTTCAGAACACAA 1688
|||||||| |||||||||| |||| ||||||||||| |||||||||||| | || | |
Sbjct 1479 AAAGCATTACAAGGTGTGGCTTAGTTTTGCAAAGTTTGAAGCTTCTGCTGCTCAAGATAC 1538
Query 1689 AGAAG--ACGGCATCAAAAGCGCCAGAGTGATCTTCGACAGAGCCAATACATACTACAAA 1746
|| | | | | || | |||||||| ||| ||||| |||||||| ||||||||||||
Sbjct 1539 TGATGTTATT-CTTGAACA-CGCCAGAGCGATTTTCGATAGAGCCAACACATACTACAAA 1596
Query 1747 GACACCACACCGGAGCTTGAAG-AAGAGCGTGCTACGCTTTTGGAGGATTGGCTTAACAT 1805
|| ||| ||||||||| ||| |||| || |||| ||| |||||||||||||| |||||
Sbjct 1597 GAGTCCAAACCGGAGCTC-AAGGAAGAACGAGCTAAGCTGTTGGAGGATTGGCTGAACAT 1655
Query 1806 GGAGAC-AGGCTTTGGTGAG-CTCGGGGATGTTAGTG-TCGTTCAATCAAAGCTCCCGAA 1862
|||| | || ||||||| | | |||||||||||||| | |||||||| |||||||| ||
Sbjct 1656 GGAGGCCAG-CTTTGGT-ATTCCCGGGGATGTTAGTGCT-GTTCAATCGAAGCTCCCAAA 1712
Query 1863 GAAGCTCAAGAAGAGAAAGATGACCAGTAGAGAAGACGGCTCTA-CAGAGTATGAAGAAT 1921
||||||||||||||||||| | || |||||||||||| | | |||||||||||||||
Sbjct 1713 GAAGCTCAAGAAGAGAAAGCCAATCACTAGAGAAGACGG-TGAAACAGAGTATGAAGAAT 1771
Query 1922 ACTTTGATTATCTGTTCCCTGAAGAATCAGGGACGACGAATCTCAAGATTCTTGAAGCTG 1981
|| |||||||| ||||||| ||||||||| ||||| |||||||||||||||||||||||
Sbjct 1772 ACATTGATTATTTGTTCCCAGAAGAATCACAGACGATGAATCTCAAGATTCTTGAAGCTG 1831
Query 1982 CTTATAAATGGAAGAAGC 1999
|| |||||||||||||||
Sbjct 1832 CTCATAAATGGAAGAAGC 1849
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76028129020
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5