BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G46000.1
Length=1191
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494378 jgi|Araly1|494378|fgenesh2_kg.8__194__AT5G46000.1 1384 0.0
> Ahg494378 jgi|Araly1|494378|fgenesh2_kg.8__194__AT5G46000.1
Length=1092
Score = 1384 bits (749), Expect = 0.0
Identities = 884/946 (93%), Gaps = 22/946 (2%)
Strand=Plus/Plus
Query 1 ATGTCAAAGAAAGTGACCATAGCTTACGGTGGTTCCAATGGA-AACAAATTTGATGATGG 59
|||||| |||||||| |||||||||||||||||||||||| || || |||||||||||
Sbjct 1 ATGTCAGAGAAAGTG---ATAGCTTACGGTGGTTCCAATGGACAA-AATTTTGATGATGG 56
Query 60 TGTTTACGAGGGTACTTACGACGGTGTGCGTAAATTGATAGTTGGAGAAGACTTTCATGG 119
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 57 TGTTTACGAGGGTACTTACGACGGTGTGCGTAAATTGATAGTTGGAGAAGACTCTCATGG 116
Query 120 CATCGTTTACCTCAAGATCCAGTACGTGAAAAACGGTGATGTCGTTG-TTAAAGAACACG 178
|||||||||||||||||||||||||||||||||||| ||||| | || ||||||||||||
Sbjct 117 CATCGTTTACCTCAAGATCCAGTACGTGAAAAACGGAGATGTAG-TGCTTAAAGAACACG 175
Query 179 GAAGAGCAAGAGGAACACATATTACAGAGACCGAGTTTGAAGTGAAGTGCCCAGACGAAT 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 176 GAAGAGCAAGAGGAACACATATTACAGAGACCGAGTTTGAAGTGAAGTGCCCAGACGAAT 235
Query 239 ACATTACGTCTATTTGGGGAACATGCAGAAACGATCATCACAGATACAAATCTACCGGCG 298
|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 236 ACATTACGTCTATTTGGGGAACATACAGAAACGATGATCACAGATACAAATCTACCGGCG 295
Query 299 GGAGAACATTTGAACAGCTCACTGCTGCAGACAAATACGACATAAATCTTGCTGCAAAAA 358
|||| |||| || |||||||||| ||||||| ||||||||| || ||||||||||||| |
Sbjct 296 GGAGTACATCTGGACAGCTCACTCCTGCAGAAAAATACGACCTATATCTTGCTGCAAACA 355
Query 359 TGGGAACTCCAATGTATTGGAACACGGTGTCGGAGCTTCAATTCAAAACATCACACGGGA 418
|||||| |||||||||| ||| || ||||| |||||||||||||||||||| |||||||
Sbjct 356 TGGGAAGTCCAATGTATACGAATACAGTGTCAGAGCTTCAATTCAAAACATCGCACGGGA 415
Query 419 GAACATCTGAGCAGTTTCGTATGCCCGGTAC-TGGAGGATCCAACGGGGTCTCTTGGGAT 477
|||| |||||| ||||| |||||||||| || ||| ||||||||||||||||||||||||
Sbjct 416 GAACCTCTGAGGAGTTTGGTATGCCCGG-ACCTGGTGGATCCAACGGGGTCTCTTGGGAT 474
Query 478 GATGGGGCTTATGATCGTCTGAGTAAATTGTGTGTTGGAGAAGATGCTCATTGTGTGAGC 537
||||||||||||||| |||| | ||||||||||||||||||||||| |||||||||||||
Sbjct 475 GATGGGGCTTATGATGGTCTTAATAAATTGTGTGTTGGAGAAGATGATCATTGTGTGAGC 534
Query 538 TCCGTTGAGTTCCACTATGTTAAGGGAAACGACCGGATAACTCATTGTCACGGAAAGGAT 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 TCCGTTGAGTTCCACTATGTTAAGGGAAACGACCGGATAACTCATTGTCACGGAAAGGAT 594
Query 598 TCGAAAGAACACGACAAAGATGGATTCATCTCGTCTTTAACTTTCAAAACATCAATGAAT 657
||||||||||| | | | ||||||||||||||||| ||||||||||||||||||
Sbjct 595 TCGAAAGAACATG-----G-T---TTCATCTCGTCTTTAACCTTCAAAACATCAATGAAT 645
Query 658 AGAAGTTCTGAGAAATTTGGGAAACCGGTTGGTACAAAATTCCAACTTGAGGCAAAAGGG 717
||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 646 AGAAGCTCTGAGAAATTTGGGACACCGGTTGGTACAAAATTCAAACTTGAGGCAAAAGGG 705
Query 718 -TTCGATAAGATTGTGGGGTTCCGAGGAAGGTCGTCCGTAAATCGTATCAATGCACTCGG 776
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 706 CTT-GATAAGATTGTGGGGTTCCGAGGAAGGTCGTCCGTAAATCGTATCAATGCACTCGG 764
Query 777 AGCAAATTTTGCGGTGGTGGTAGTTCCTCCGGTCAAGAAACTAAATGCAAAAGGTGGTGT 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 765 AGCAAATTTTGCGGTGGTGGTAGTTCCTCCGGTCAAGAAACTAAATGCAAAAGGTGGTGT 824
Query 837 CCTTGGGAACGAGTGGGATGATGGGATTCACGACGATGCTCGAATGATAACATTCAAGCT 896
||||||||| |||||||||||||| ||||| ||||||| |||||||||||||||||||||
Sbjct 825 CCTTGGGAAGGAGTGGGATGATGGAATTCATGACGATGTTCGAATGATAACATTCAAGCT 884
Query 897 CTATTTTAACAAGGAATACATCACATCCGTTGAA--GGACACTATG 940
|||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 885 CTATTTTAACAATGAATACATCACATCCGTTGAATTGGACACTATG 930
Score = 268 bits (145), Expect = 5e-71
Identities = 145/145 (100%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 1017 GTTCAATACAAACCGTACAACATATCAAGTGTTAAGTCACAGTCCAGAATACACTTACGA 1076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 930 GTTCAATACAAACCGTACAACATATCAAGTGTTAAGTCACAGTCCAGAATACACTTACGA 989
Query 1077 GGGAACATCATTCAAGCTTGAGGAGAAAGATCACAAGATTGTTGGGTTTTATGGGAAGAC 1136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 990 GGGAACATCATTCAAGCTTGAGGAGAAAGATCACAAGATTGTTGGGTTTTATGGGAAGAC 1049
Query 1137 TGAAGTTTCTCTCAACCAAATTGGG 1161
|||||||||||||||||||||||||
Sbjct 1050 TGAAGTTTCTCTCAACCAAATTGGG 1074
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44451321222
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5