BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G46000.1 Length=1191 Score E Sequences producing significant alignments: (Bits) Value Ahg494378 jgi|Araly1|494378|fgenesh2_kg.8__194__AT5G46000.1 1384 0.0 > Ahg494378 jgi|Araly1|494378|fgenesh2_kg.8__194__AT5G46000.1 Length=1092 Score = 1384 bits (749), Expect = 0.0 Identities = 884/946 (93%), Gaps = 22/946 (2%) Strand=Plus/Plus Query 1 ATGTCAAAGAAAGTGACCATAGCTTACGGTGGTTCCAATGGA-AACAAATTTGATGATGG 59 |||||| |||||||| |||||||||||||||||||||||| || || ||||||||||| Sbjct 1 ATGTCAGAGAAAGTG---ATAGCTTACGGTGGTTCCAATGGACAA-AATTTTGATGATGG 56 Query 60 TGTTTACGAGGGTACTTACGACGGTGTGCGTAAATTGATAGTTGGAGAAGACTTTCATGG 119 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 57 TGTTTACGAGGGTACTTACGACGGTGTGCGTAAATTGATAGTTGGAGAAGACTCTCATGG 116 Query 120 CATCGTTTACCTCAAGATCCAGTACGTGAAAAACGGTGATGTCGTTG-TTAAAGAACACG 178 |||||||||||||||||||||||||||||||||||| ||||| | || |||||||||||| Sbjct 117 CATCGTTTACCTCAAGATCCAGTACGTGAAAAACGGAGATGTAG-TGCTTAAAGAACACG 175 Query 179 GAAGAGCAAGAGGAACACATATTACAGAGACCGAGTTTGAAGTGAAGTGCCCAGACGAAT 238 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 176 GAAGAGCAAGAGGAACACATATTACAGAGACCGAGTTTGAAGTGAAGTGCCCAGACGAAT 235 Query 239 ACATTACGTCTATTTGGGGAACATGCAGAAACGATCATCACAGATACAAATCTACCGGCG 298 |||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 236 ACATTACGTCTATTTGGGGAACATACAGAAACGATGATCACAGATACAAATCTACCGGCG 295 Query 299 GGAGAACATTTGAACAGCTCACTGCTGCAGACAAATACGACATAAATCTTGCTGCAAAAA 358 |||| |||| || |||||||||| ||||||| ||||||||| || ||||||||||||| | Sbjct 296 GGAGTACATCTGGACAGCTCACTCCTGCAGAAAAATACGACCTATATCTTGCTGCAAACA 355 Query 359 TGGGAACTCCAATGTATTGGAACACGGTGTCGGAGCTTCAATTCAAAACATCACACGGGA 418 |||||| |||||||||| ||| || ||||| |||||||||||||||||||| ||||||| Sbjct 356 TGGGAAGTCCAATGTATACGAATACAGTGTCAGAGCTTCAATTCAAAACATCGCACGGGA 415 Query 419 GAACATCTGAGCAGTTTCGTATGCCCGGTAC-TGGAGGATCCAACGGGGTCTCTTGGGAT 477 |||| |||||| ||||| |||||||||| || ||| |||||||||||||||||||||||| Sbjct 416 GAACCTCTGAGGAGTTTGGTATGCCCGG-ACCTGGTGGATCCAACGGGGTCTCTTGGGAT 474 Query 478 GATGGGGCTTATGATCGTCTGAGTAAATTGTGTGTTGGAGAAGATGCTCATTGTGTGAGC 537 ||||||||||||||| |||| | ||||||||||||||||||||||| ||||||||||||| Sbjct 475 GATGGGGCTTATGATGGTCTTAATAAATTGTGTGTTGGAGAAGATGATCATTGTGTGAGC 534 Query 538 TCCGTTGAGTTCCACTATGTTAAGGGAAACGACCGGATAACTCATTGTCACGGAAAGGAT 597 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 535 TCCGTTGAGTTCCACTATGTTAAGGGAAACGACCGGATAACTCATTGTCACGGAAAGGAT 594 Query 598 TCGAAAGAACACGACAAAGATGGATTCATCTCGTCTTTAACTTTCAAAACATCAATGAAT 657 ||||||||||| | | | ||||||||||||||||| |||||||||||||||||| Sbjct 595 TCGAAAGAACATG-----G-T---TTCATCTCGTCTTTAACCTTCAAAACATCAATGAAT 645 Query 658 AGAAGTTCTGAGAAATTTGGGAAACCGGTTGGTACAAAATTCCAACTTGAGGCAAAAGGG 717 ||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||||| Sbjct 646 AGAAGCTCTGAGAAATTTGGGACACCGGTTGGTACAAAATTCAAACTTGAGGCAAAAGGG 705 Query 718 -TTCGATAAGATTGTGGGGTTCCGAGGAAGGTCGTCCGTAAATCGTATCAATGCACTCGG 776 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 706 CTT-GATAAGATTGTGGGGTTCCGAGGAAGGTCGTCCGTAAATCGTATCAATGCACTCGG 764 Query 777 AGCAAATTTTGCGGTGGTGGTAGTTCCTCCGGTCAAGAAACTAAATGCAAAAGGTGGTGT 836 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 765 AGCAAATTTTGCGGTGGTGGTAGTTCCTCCGGTCAAGAAACTAAATGCAAAAGGTGGTGT 824 Query 837 CCTTGGGAACGAGTGGGATGATGGGATTCACGACGATGCTCGAATGATAACATTCAAGCT 896 ||||||||| |||||||||||||| ||||| ||||||| ||||||||||||||||||||| Sbjct 825 CCTTGGGAAGGAGTGGGATGATGGAATTCATGACGATGTTCGAATGATAACATTCAAGCT 884 Query 897 CTATTTTAACAAGGAATACATCACATCCGTTGAA--GGACACTATG 940 |||||||||||| ||||||||||||||||||||| |||||||||| Sbjct 885 CTATTTTAACAATGAATACATCACATCCGTTGAATTGGACACTATG 930 Score = 268 bits (145), Expect = 5e-71 Identities = 145/145 (100%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 1017 GTTCAATACAAACCGTACAACATATCAAGTGTTAAGTCACAGTCCAGAATACACTTACGA 1076 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 930 GTTCAATACAAACCGTACAACATATCAAGTGTTAAGTCACAGTCCAGAATACACTTACGA 989 Query 1077 GGGAACATCATTCAAGCTTGAGGAGAAAGATCACAAGATTGTTGGGTTTTATGGGAAGAC 1136 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 990 GGGAACATCATTCAAGCTTGAGGAGAAAGATCACAAGATTGTTGGGTTTTATGGGAAGAC 1049 Query 1137 TGAAGTTTCTCTCAACCAAATTGGG 1161 ||||||||||||||||||||||||| Sbjct 1050 TGAAGTTTCTCTCAACCAAATTGGG 1074 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 44451321222 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5