BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G46020.1
Length=969
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494379 jgi|Araly1|494379|fgenesh2_kg.8__195__AT5G46020.1 1273 0.0
> Ahg494379 jgi|Araly1|494379|fgenesh2_kg.8__195__AT5G46020.1
Length=828
Score = 1273 bits (689), Expect = 0.0
Identities = 798/846 (94%), Gaps = 25/846 (3%)
Strand=Plus/Plus
Query 1 AAAAATCCACACTCAAAGAAAGAATCCCCAAATCCACAGGTGGCTTTAGGGTTTTCGTCT 60
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAAATCCACACTGAAACAAAGAATCCCCAAATCCACAGGTGGCTTTAGGGTTTTCGTCT 60
Query 61 CTTTCACTCGTAACCGG-A-AGA-GAGGACAAGATCCTCCACTAATTTCACAAAAAGCTC 117
|||| |||||||||||| | ||| |||||||||||||||||||||||||||||||||||
Sbjct 61 CTTT-ACTCGTAACCGGAAGAGAGGAGGACAAGATCCTCCACTAATTTCACAAAAAGCTA 119
Query 118 ATCTTTTTATTCGTTTTCGAATCGATTCGTTATCTGGG-TTCAAGTATCAAAttctctgg 176
||||||||||||| ||||||| ||||||||| |||||| |||||| ||||||||||||||
Sbjct 120 ATCTTTTTATTCGCTTTCGAAACGATTCGTTTTCTGGGTTTCAAGAATCAAATTCTCTGG 179
Query 177 tttcgtttttcg-ttt-ttgatttgttctctctctttcggaaaaagtttggttttttttt 234
|||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 180 TTTCGTTTTTCGTTTTCTTGATTTGTTCTCTCTCTTTCGGAAAAA--------------- 224
Query 235 tGTTTGAAACAATGGGAAGAGGCAAGTTCAAGGGTAAACCTACCGGCCAACGCCGATTCT 294
||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 225 -GTTTGCAACGATGGGAAGAGGCAAGTTCAAGGGTAAACCTACCGGCCAACGCCGATTCT 283
Query 295 CTAGTGCTGCTGATATTCTTGCTGGCACATCTGCTGCACGTCCTCGATCATTCAAACaga 354
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 284 CTAGTGCTGCCGATATTCTTGCTGGTACATCTGCTGCACGTCCTCGATCATTCAAACAGA 343
Query 355 aagaagctgagtacgaagaagatgttgaagaagagtcagaggaggaatctgaagaagaat 414
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 344 AAGAAGCTGAATACGAAGAAGATGTTGAAGACGAGTCAGAGGAGGAATCTGAAGAAGAAT 403
Query 415 ccgaagatgaagctgatgtgaagaagaaagGAGCTGAAGCTGTTATCGAAGTTGATAACC 474
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 404 CCGAAGATGACGCTGATGTGAAGAAGAAAGGAGCTGAAGCTGTTATCGAAGTTGATAATC 463
Query 475 CTAACAGAGTAAGA-CAAAAGACCTTGAAAGCAAAAGACCTCGATGCTAGTAAAACCACT 533
|||||||||||| | | ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 464 CTAACAGAGTAAAAGC-AAAGACCTTGAAAGCAAGAGACCTCGATGCTAGTAAAACCACT 522
Query 534 GAACTCTCAAGGCGTGAAAGAGAGGAGCTAGAGAAGCAGCGAGCTCATGAGCGATACATG 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 523 GAACTCTCAAGGCGTGAAAGAGAGGAGCTAGAGAAGCAGCGAGCTCATGAGCGATACATG 582
Query 594 AGGTTGCAAGAGCAAGGCAAAACCGAACAAGCAAGGAAGGACTTGGATCGTTTGGCTCTG 653
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 583 AGGTTGCAAGAGCAAGGCAAAACCGAACAAGCAAGAAAGGACTTGGATCGTTTGGCTCTG 642
Query 654 ATTCGCCAACagagagaagaagctgccaagaagcgagaagaggaaaaagccgcaagagac 713
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 643 ATTCGCCAACAGAGAGAAGAAGCTGCCAAGAAGCGAGAAGAGGAAAAAGCTGCAAGAGAC 702
Query 714 gctaagaaagTCGAAGGGCGCAAATGAGAAGTGATCACACTCAAAAGACCTGCCTACTAT 773
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 703 GCTAAGAAAGTCGAAGGGCGCAAATGAGAAGTGATCACACTCAAAAGACCTACCTTCTAT 762
Query 774 GCGATTAAGATGTGTTGTTTTTACTTTGTTCTTTTTCGATTGATAAAAGATAAAACCTCT 833
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 763 GCAATTAAGATGTGTTGTTTTTACTTTGTTCTTTTTCGATTGATAAAAGATAAAACTTCT 822
Query 834 GCTATT 839
||||||
Sbjct 823 GCTATT 828
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35988033648
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5