BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G46030.1

Length=732
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg356397 jgi|Araly1|356397|fgenesh1_pg.C_scaffold_8000184           593    4e-169


> Ahg356397 jgi|Araly1|356397|fgenesh1_pg.C_scaffold_8000184
Length=363

 Score =  593 bits (321),  Expect = 4e-169
 Identities = 351/365 (96%), Gaps = 4/365 (1%)
 Strand=Plus/Plus

Query  135  ATGGGAAAGAGGAAATCAAGAGCAAAGCCTGCTCCTACGAAGCGAATGGATAAGCTTGAC  194
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGGAAAGAGGAAATCAAGAGCAAAGCCTGCTCCTACGAAGCGAATGGATAAGCTTGAC  60

Query  195  ACAATCTTTAGTTGTCCTTTCTGCAATCACGGGTCTAGTGTCGAATGCATCATTGATATG  254
            |||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||
Sbjct  61   ACAATCTTTAGTTGTCCTTTCTGCAATCACGGCTCCAGTGTCGAATGCATAATTGATATG  120

Query  255  AAGCATCTGATTGGTAAAGCAGCTTGTAGAATCTGTGAAGAAAGCTTTAGTACTACTATC  314
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  AAGCATCTGATTGGTAAAGCAGCTTGTAGAATCTGTGAAGAAAGCTTTAGTACTACTATC  180

Query  315  ACAGCTTTGACTGAAGCTATAGACATTTATAGCGAATGGATCGATGAGTGCGAGAGGGTT  374
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  ACAGCTTTGACTGAAGCTATAGACATTTATAGCGAATGGATCGATGAGTGCGAGAGGGTT  240

Query  375  AATACCGCGGAAGATGATGTTGTGCaagaagaggaagaagaagtag-aag-aggaagaag  432
            |||||||||||||||||||||||||||||||| |||||||| | || ||| || ||||||
Sbjct  241  AATACCGCGGAAGATGATGTTGTGCAAGAAGAAGAAGAAGAGG-AGGAAGTAG-AAGAAG  298

Query  433  aagaggaagaagaggaggatgatgaagaTGACCATGTCTCTGTCAAAAGGAAGTATAACT  492
            |||| || ||||| ||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct  299  AAGAAGAGGAAGAAGAGGATGATGAAGATGACCGTGTCTCTGTCAAAAGGAAGTATAATT  358

Query  493  TCTGA  497
            |||||
Sbjct  359  TCTGA  363



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26952902319


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5