BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G46040.1
Length=1761
Score E
Sequences producing significant alignments: (Bits) Value
Ahg915474 jgi|Araly1|915474|Al_scaffold_0008_225 2765 0.0
Ahg494374 jgi|Araly1|494374|fgenesh2_kg.8__190__AT5G46050.1 1400 0.0
> Ahg915474 jgi|Araly1|915474|Al_scaffold_0008_225
Length=1749
Score = 2765 bits (1497), Expect = 0.0
Identities = 1659/1739 (95%), Gaps = 4/1739 (0%)
Strand=Plus/Plus
Query 1 ATGACAGTAGAAGAGGTAGGAGATGATTATACAAAAGATGGAACAGTTGATCTTCGAGGA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGACAGTAGAAGAGGTAGGAGATGATTATACAAAAGATGGAACAGTTGATCTTCGAGGA 60
Query 61 AATCGCGTCCGAAGATCCCAAACAGGCCGTTGGAAAGCTTGTTCCTTCGTCGTTGTGTAC 120
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AATTGCGTCCGAAGATCTCAAACAGGCCGTTGGAAAGCTTGTTCCTTCGTCGTTGTGTAC 120
Query 121 GAGGTGTTTGAAAGAATGGCGTATTATGGAATATCAAGCAACCTAGTTATCTACATGACT 180
||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 121 GAGGTATTTGAAAGAATGGCGTATTATGGAATATCAAGCAACTTAGTGATCTACATGACT 180
Query 181 ACCAAATTGCACCAAGGCACGGTCAAGTCGTCGAACAATGTGACCAACTGGGTTGGGACT 240
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 181 ACCAAATTGCACCAAGGCACGGTCAAGTCGTCGAACAATGTGACCAATTGGGTTGGGACT 240
Query 241 AGTTGGCTCACTCCAATCTTGGGTGCTTATGTTGCTGATGCTCATTTCGGTCGCTACATC 300
|| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 241 AGCTGGCTCACTCCAATCTTGGGTGCTTATGTTGCCGATGCTCATCTCGGTCGCTACATC 300
Query 301 ACTTTCGTCATCTCTTCCGCTATCTATTTATTGGGAATGGCATTACTGACACTATCAGTA 360
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 301 ACTTTCGTCATCTCTTCCGCTATCTATTTATTGGGAATGGCATTACTGACGTTATCAGTA 360
Query 361 TCGCTACCGGGACTTAAACCACCGAAATGTTCGACGGCTAATGTTGAAAACTGTGAAAAA 420
|| ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 361 TCTCTACCGGCACTTAAACCACCGAAATGTTCGACGGCTAATGTTGAAAACTGCGAAAAA 420
Query 421 GCTTCGGTTATACAGTTAGCGGTATTCTTTGGAGCGTTATACACATTAGCAATCGGTACA 480
||||||||| |||| ||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 421 GCTTCGGTTTTACAATTAGCGGTATTCTTTGGAGCGTTATACACATTAGCGGTTGGTACA 480
Query 481 GGCGGTACAAAACCGAACATTTCTACAATAGGTGCTGATCAATTCGATGAATTTGACCCA 540
|||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 481 GGCGGTACGAAACCAAACATTTCTACAATAGGTGCTGATCAATTCGATGAATTCGACCCT 540
Query 541 AAGGACAAGATTCATAAACATTCATTCTTCAATTGGTGGATGTTTAGTATCTTCTTTGGT 600
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 AAGGAGAGGATTCATAAACATTCATTCTTCAATTGGTGGATGTTTAGTATCTTCTTTGGT 600
Query 601 ACTTTCTTTGCTACAACTGTTCTTGTCTATGTTCAAGATAATGTTGGTTGGGCCATAGGT 660
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 601 ACTTTCTTTGCCACAACTGTTCTTGTCTATGTTCAAGATAATGTGGGTTGGGCCATAGGT 660
Query 661 TATGGGCTTTCAACTTTGGGACTTGCTTTCTCCATTTTCATATTCTTGTTGGGAACTCGG 720
|||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||
Sbjct 661 TATGGGCTTTCAACTTTGGGTCTTGCTTTCTCAATATTCATATTCTTGTTGGGAACTCGG 720
Query 721 TTATACCGACATAAACTCCCAATGGGAAGCCCATTCACCAAGATGGCTAGAGTCATCGTG 780
|||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 721 TTATACCGCCATAAACTCCCAACGGGAAGCCCATTCACCAAGATGGCTAGAGTCATTGTG 780
Query 781 GCTTCACTTCGCAAAGCCCGCGAGCCGATGTCGAGTGATTCGACGCGCTTCTATGAGCTT 840
||||||||||||||||||| |||||| ||| | ||||||||||| ||||||||||||||
Sbjct 781 GCTTCACTTCGCAAAGCCCACGAGCCTATGCCCCGTGATTCGACGTGCTTCTATGAGCTT 840
Query 841 CCACCTATGGAATATGCTAGCAAAAGGGCTTTCCCAATCCATTCTACTTC-AAGTCTAAG 899
| || ||||||||||| ||||||||||||||||| ||||||||||| || |||||| ||
Sbjct 841 TCGCCAATGGAATATGCAAGCAAAAGGGCTTTCCCGATCCATTCTAC-TCTAAGTCTTAG 899
Query 900 ATTCTTAAATCGAGCTTCACTCAAAACCGGATCAACCCATAAATGGAGGCTCTGTACTAT 959
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 900 ATTCTTAGATCGAGCTTCACTCAAAACCGGATCAACCCATAAATGGAGTCTCTGTACAAT 959
Query 960 CACAGAAGTGGAAGAAACAAAACAGATGCTAAAAATGTTACCTGTCCTCTTCGTAACATT 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 CACAGAAGTGGAAGAAACAAAACAGATGCTAAAAATGTTACCTGTCCTCTTCGTAACATT 1019
Query 1020 CGTCCCAAGCATGATGCTTGCTCAAATAATGACTCTGTTCATCAAACAAGGAACGACCCT 1079
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1020 CGTCCCAAGCATGATGCTTGCTCAAATAATGACTTTGTTCATCAAACAAGGAACGACCCT 1079
Query 1080 CGACCGTCGTCTCACAAACAACTTCAGCATCCCACCCGCAAGTCTCCTAGGCTTCACAAC 1139
||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||
Sbjct 1080 CGACCGTCGTCTCACAAACAACTTCAGCATCCCGCCAGCAAGTCTCTTAGGCTTCACAAC 1139
Query 1140 ATTCTCAATGCTCGTCTCTATAGTCATATACGACCGTGTCTTTGTTAAGTTCATGAGAAA 1199
||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 1140 ATTCTCAATGCTCGTCTCTATAGTCATATACGACCGTGTATTTGTTAAACTCATGAGAAA 1199
Query 1200 ACTAACCGGAAATCCAAGAGGTATCACATTGCTTCAGCGAATGGGAATCGGTATGATCCT 1259
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1200 ACTAACCGGAAATCCAAGAGGTATCACATTGCTCCAGCGAATGGGAATCGGTATGATCCT 1259
Query 1260 TCACATCCTAATCATGATCATCGCGTCCATAACCGAACGGTATAGGCTCAAGGTCGCTGC 1319
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1260 TCACATCCTAATCATGATCATAGCGTCCATAACCGAACGGTATAGGCTCAAGGTCGCTGC 1319
Query 1320 TGAACACGGGCTAACCCACCAGACCGCTGTACCAATTCCTTTGAGCATTTTCACATTGCT 1379
||||| |||||||| |||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 1320 TGAACGCGGGCTAAACCACCAGACCGCTGTACCAATTCCCTTGACCATTTTCACATTGCT 1379
Query 1380 TCCACAGTATGT-ACTAATGGGTTTGGCAGATGCTTTCATAGAAATAGCAAAGCTGGAGT 1438
|||||||||||| | ||||||||||||| |||||||| ||||| ||||||||||| ||||
Sbjct 1380 TCCACAGTATGTGA-TAATGGGTTTGGCTGATGCTTTTATAGAGATAGCAAAGCTCGAGT 1438
Query 1439 TTTTCTACGATCAAGCACCAGAGAGTATGAAAAGCCTCGGGACATCATATACGAGCACAA 1498
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 TCTTCTACGATCAAGCACCAGAGAGTATGAAAAGCCTCGGGACATCATATACGAGCACAA 1498
Query 1499 GTATGGCAGTCGGGTATTTCATGAGCAGCATTTTGCTTTCGTCAGTGTCTCAGATAACAA 1558
|||||||||||||| ||||| ||||||| ||||||||||||| ||||||||||||||||
Sbjct 1499 GTATGGCAGTCGGGAATTTCCTGAGCAGTTTTTTGCTTTCGTCCGTGTCTCAGATAACAA 1558
Query 1559 AGAAGCAGGGAAGAGGATGGATTCAAAACAACTTGAATGAGTCTAGGCTGGATAACTATT 1618
||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 1559 AGACGCAGGGAAGAGGATGGATTCAAAACAACTTGAATGAGTCTAGGTTGGATAAATATT 1618
Query 1619 ACATGTTCTTCGCGGTACTTAATTTGCTTAACTTCATCCTCTTCTTGGTTGTAATTAGAT 1678
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1619 ACATGTTCTTCGCGGTACTTAATTTGGTTAACTTCATCCTCTTCTTGGTTGTAATTAGAT 1678
Query 1679 TTTATGAGTACAGAGCTGATGTTACGCAATCAGCAAACGTAGAACAGAAAGAACCAAAT 1737
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1679 TTTATGAGTACAGAGCTGATGTTACGCAATCAGCAAATGTAGAACAGAAAGAACCAAAT 1737
> Ahg494374 jgi|Araly1|494374|fgenesh2_kg.8__190__AT5G46050.1
Length=1806
Score = 1400 bits (758), Expect = 0.0
Identities = 1431/1746 (82%), Gaps = 86/1746 (5%)
Strand=Plus/Plus
Query 1 ATGACAGTAGAAGAGGTAGGAGATGATTATACAAAAGATGGAACAGTTGATCTTCGAGGA 60
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 31 ATGACAGTAGAAGAGGTAGGAGACGATTATACAAAAGATGGAACAGTTGATCTTCGAGGC 90
Query 61 AATCGC-GTCCGAAGATCCCA-AACAGGCCGTTGGAAAGCTTGTTCCTTCGTCGTTGTGT 118
|||| | || ||||||| ||| | ||| |||||||||||||| || |||||||||||||
Sbjct 91 AATC-CTGTTCGAAGAT-CCATTAGAGGTCGTTGGAAAGCTTGCTCTTTCGTCGTTGTGT 148
Query 119 ACGAGGTGTTTGAAAGAATGGCGTATTATGGAATATCAAGCAACCTAGTTATCTACATGA 178
|||||||||||||| | ||||| |||||||| ||||||||||||||||| || |||||||
Sbjct 149 ACGAGGTGTTTGAACGGATGGCTTATTATGGGATATCAAGCAACCTAGTGATATACATGA 208
Query 179 CTACCAAATTGCACCAAGGCACGGTCAAGTCGTCGAACAATGTGACCAACTGGGTTGGGA 238
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 209 CTACCAAATTGCACCAAGGCACGGTCGAGTCGTCGAACAATGTGACCAATTGGGTTGGGA 268
Query 239 CTAGTTGGCTCACTCCAATCTTGGGTGCTTATGTTGCTGATGCTCATT-TCGGTCGCTAC 297
|||||||||||||||||||||||||||||||||||| || |||| || |||||||||||
Sbjct 269 CTAGTTGGCTCACTCCAATCTTGGGTGCTTATGTTGGAGACGCTC-TTCTCGGTCGCTAC 327
Query 298 ATCACTTTCGTCATCTCTTCCGCTATCTATTTATT-GGG-A--ATGGCATTACTGACACT 353
||||||||||||||||||| |||||||| || || ||| | |||| ||| ||| |
Sbjct 328 ATCACTTTCGTCATCTCTTGTGCTATCTACTT-TTCGGGGATGATGGTGTTA---ACATT 383
Query 354 ATCAGTATCGCTACCGGGACTTAAACCACC-GAAATGTTC-GACGGCTAATGTT-GAAAA 410
||||||| | |||||||| |||| ||||| ||| ||||| | ||||||| ||| ||| |
Sbjct 384 ATCAGTAACTATACCGGGAATTAAGCCACCAGAA-TGTTCCG-CGGCTAA-GTTCGAAGA 440
Query 411 CTGTGAAAAAG-CTTCGGTTATACAGTTAGCGGTATTCTTTGGAGCGTTATACACATTAG 469
|| |||||| |||||||| |||| |||||||| |||||||||||||||||||| ||||
Sbjct 441 TTGC-AAAAAGGCTTCGGTTTTACAATTAGCGGTTTTCTTTGGAGCGTTATACACCTTAG 499
Query 470 CAATCGGTACAGGCGGTACAAAACCGAACATTTCTACAATAGGTGCTGATCAATTCGATG 529
||||||||||||| || |||||||||||||| || || ||||| ||||||||||||||||
Sbjct 500 CAATCGGTACAGGTGGAACAAAACCGAACATATCAACCATAGGAGCTGATCAATTCGATG 559
Query 530 AATTTGACCCAAAGGACAAGATTCATAAAC-ATTCATTCTTCAATTGGTGGATGTTTAGT 588
||| ||||||||||| |||| ||| |||| || |||||||||| |||||||||||||||
Sbjct 560 TATTCGACCCAAAGGAGAAGACTCAAAAACTAT-CATTCTTCAACTGGTGGATGTTTAGT 618
Query 589 ATCTTCTTTGGTACTTTCTTT-GCTA-CAACTGTTCTTGTCTATGTTCAAGATAATGTTG 646
||||||||||||||| | ||| || | || ||||||||||||||||||||||||||||||
Sbjct 619 ATCTTCTTTGGTACTCT-TTTCGCCAACA-CTGTTCTTGTCTATGTTCAAGATAATGTTG 676
Query 647 GTTGGGCCATAGGTTATGGGCTTTCAACTTTGGGACTTGCT-TTCTCCATTTTCATATTC 705
||||| | | || ||||| ||| |||| || || || ||| || |||||| ||| |||
Sbjct 677 GTTGGACTTTGGGGTATGGACTTCCAACATTAGGTCTGGCTATT-TCCATTACCATTTTC 735
Query 706 TTGTTGGGAACTCGGTTATACCGACATAAACT-CCCAATGGGAAGCCCATTCACCAAGAT 764
|||||||| |||| ||| ||||| |||||||| |||| ||| ||| || |||||||||||
Sbjct 736 TTGTTGGGTACTCCGTTTTACCGTCATAAACTTCCCACTGG-AAGTCCTTTCACCAAGAT 794
Query 765 GGCTAGAGTCATCGTGGCTTCACTTCGCAAAGCCC--GCGAGCCGATGTCG-AGTGATTC 821
|||| ||||||| ||||||||| ||||||||||| || | || ||| || | ||| |
Sbjct 795 GGCTCGAGTCATTGTGGCTTCATTTCGCAAAGCCAAAGC-A-CCAATGGCGCA-TGA--C 849
Query 822 GACGC--GCTTCTATGAGCTTCCA-C-CTATGGAATATGCTAGCA-AAAGG-GC-TTTCC 874
|| | ||||| | ||||| || | || || |||||| ||| ||||| || |||||
Sbjct 850 AACACAAGCTTCCACGAGCTACCCTCACT-TG-AATATG--AGCGGAAAGGCGCCTTTCC 905
Query 875 CAATCCATTCTACTTCAAGTCTAAGATTCTTAAATC-GAGCTTCACTCAAAACCGGATCA 933
| |||| | ||| ||||| || ||||| || | | |||||||||||||||| ||| ||
Sbjct 906 GA-TCCAACCCACTCCAAGTTTACGATTCCTAGA-CAGAGCTTCACTCAAAACAGGAACA 963
Query 934 ACCCATAAATGGAGGCTCTGTACTATCACAGAAGTGGAAGAAACAAAACAGATGCTAAAA 993
|| |||||||||| || ||||| | ||||||||| |||||||||||||| ||||| | |
Sbjct 964 ACTCATAAATGGAATCTTTGTACAACCACAGAAGTCGAAGAAACAAAACAAATGCTGAGA 1023
Query 994 ATGTTACCTGTCCTCTTCGTAACATTCGTCCCAAGCATGATGCTTGCTCAAAT-AATGAC 1052
|||||||||||| | ||| |||| ||||||||||||||||||||||||||||| || ||
Sbjct 1024 ATGTTACCTGTCTTGTTCATAACTTTCGTCCCAAGCATGATGCTTGCTCAAATCAAC-AC 1082
Query 1053 TCTGTTCATCAAACAAGGAACGACCCTCGACCGTC-GTCTCACAAACAACTT-CAGCATC 1110
| |||| | ||||||||||| || || |||||| | |||| | ||| |||||||
Sbjct 1083 TTTGTTTGTTAAACAAGGAACCACTCTAGACCGTAAGG-TCACCGG-ATCTTTCAGCATC 1140
Query 1111 CCACCCGCAAGTCTC-CTAGGCTTCA-CAACATTCTCAATGCTCGTCTCTATAGTCATAT 1168
||||| ||||||||| | || || || || ||||||||||| | || |||||| |||
Sbjct 1141 CCACCAGCAAGTCTCTCC-GGTTTTGTCA-CACTCTCAATGCTCATTTCCATAGTCTTAT 1198
Query 1169 ACGACCGTGTCTTTGTTAAGTTCATGAGAAAACTAACCGGAAATCCAAGAGGTATCACAT 1228
| || || ||||| || ||| | | ||||| | ||||||||||||||||| || || |
Sbjct 1199 ATGATCGAGTCTTCGTCAAGATAACCCGAAAATTCACCGGAAATCCAAGAGGCATTACTT 1258
Query 1229 TGCTTCAGCGAATGGGAATCGGTATGATCCTTC-ACATCCTAATCATGATCATCGCGTCC 1287
||||||| ||||||||||| ||| | ||| ||| | ||||| ||||||||| | || ||
Sbjct 1259 TGCTTCAACGAATGGGAATTGGTCTTATC-TTCCATATCCTCATCATGATCGTTGCATCT 1317
Query 1288 ATAACCGAACGGTATAGGCTCAAGGTCGCTGCTGAACACGGGCTAACCCACCAGACCGCT 1347
| || ||| ||||||| ||||||||||||||||| || || || | ||||| ||||
Sbjct 1318 GTCACTGAAAGGTATAGACTCAAGGTCGCTGCTGATCATGGTCTCATTCACCAAACCGGA 1377
Query 1348 GTACCAATT-CCTTTGAGCAT-TTTCACATTGCTTCCACAGTAT-GTACTAATGGGTTTG 1404
||| || | ||||| | ||| ||| | || |||||||| | | || ||||||||| ||
Sbjct 1378 GTAA-AACTACCTTTAACCATCTTTG-CTTTACTTCCACAAT-TCGTCCTAATGGGTATG 1434
Query 1405 GCAGATGCTTTCATAGAAATAGCAAAGCTGGAGTTTTTCTACGATCAAGCACCAGAGAGT 1464
|| ||| | ||| ||||| | |||||||| ||||| |||||||||||||| || |||||
Sbjct 1435 GCTGATTCGTTCTTAGAAGTTGCAAAGCTCGAGTTCTTCTACGATCAAGCTCCCGAGAGC 1494
Query 1465 ATGAAAAGCCTCGGGACATCATATACGAGCA-CAAGTATGGC-AGTCGGGTATTTCATGA 1522
|||||||||||||||||||||||| ||| || | ||| | || | | ||| |||||||||
Sbjct 1495 ATGAAAAGCCTCGGGACATCATATTCGA-CAACGAGTTTAGCGATT-GGGAATTTCATGA 1552
Query 1523 GCAGCATT-TTGCTT-TCGTCAGTGTCTCAGATAACAAAGAAGC-AGGGAAGAGGATGGA 1579
|||| || ||| || || ||||||| |||| |||||||| | ||| |||||||||||
Sbjct 1553 GCAGT-TTCTTG-TTATCAACAGTGTCAGAGATCACAAAGAAACGAGG-AAGAGGATGGA 1609
Query 1580 TTCAAAACAA-CTTGAATGAGTCTAGGCTGGATAACTATTACATGTTCTTCGCGGTACTT 1638
|| ||||| || ||| ||||||||| ||||| | || ||| ||||||| |||||||||
Sbjct 1610 TTTTGAACAATCT-GAACGAGTCTAGGTTGGATTATTACTACTTGTTCTTTGCGGTACTT 1668
Query 1639 AATTTGCTTAACTTCATCCTCTTCTTGGTTGTAATTA-GATTTTATGAGTACAGAGCTGA 1697
||| || |||||||| || | |||||||| || ||| | ||||||| || ||||||||
Sbjct 1669 AATCTGGTTAACTTCGTCTTGTTCTTGGTCGTGGTTAAG-TTTTATGTTTATAGAGCTGA 1727
Query 1698 TGTTAC 1703
|||||
Sbjct 1728 GGTTAC 1733
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66086575075
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5