BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G46060.1
Length=1125
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494372 jgi|Araly1|494372|fgenesh2_kg.8__188__AT5G46060.1 1533 0.0
> Ahg494372 jgi|Araly1|494372|fgenesh2_kg.8__188__AT5G46060.1
Length=1071
Score = 1533 bits (830), Expect = 0.0
Identities = 951/1008 (94%), Gaps = 13/1008 (1%)
Strand=Plus/Plus
Query 1 GACTCAGATTAAATGAAGCAAAGTGGATTATTCTATACGTCTAAGATTCCTCTAAATCTT 60
|||||| |||||||||||||||||||| ||||| ||||||| |||||||||||||| ||
Sbjct 1 GACTCATATTAAATGAAGCAAAGTGGA-TATTCCATACGTCCAAGATTCCTCTAAAAATT 59
Query 61 TATATCCATCTCAGTTCCTTACTCTTTATTTTATACGCaaaaaaataaaaaCGTATCCAT 120
|||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||
Sbjct 60 TATATCCATCTCAGTTCCTTACTCTTTATTTTATACGC--AAAATTAGAAACGTATCCAT 117
Query 121 ATATAT-AACATTTATGTGTGTGTAAGAATATATATTATAAATCAAGACAGACATTTTAG 179
|||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 118 ATATATAAACATTTATGTGTGTGTAAGAATATATATAATAAATCAAGACAGACATTGTAG 177
Query 180 CACAGAAGTAGAGAAACAAAGGAA----GAAGATGGAGATATTTGTGAAGAAAGAGTACT 235
|||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 178 CACAGAAGTAGAGAAAGAAAGGAAGCTGGAAGATGGAGATATTTGTGAAGAAAGAGTACT 237
Query 236 TAGATTTGGTTCTTGTCCCATTTGGATTAATCATAGTTTTATCTTACCATCTATTTCTTC 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 TAGATTTGGTTCTTGTCCCATTTGGATTAATCATAGTTTTATCTTACCATCTATTTCTTC 297
Query 296 TCTATAGAATCCTTTACTTTCCTTACCATACCATTATCGGTTTCATGAACATCGATAAAT 355
||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 298 TCTATAGAATCCTCTATTTTCCTTACCACACCATTATCGGTTTCATGAACATCGATAAAT 357
Query 356 CCATTTGGGTCGACCGTATCATGCAGGCAAGAAAAGACGAATTGGGTGGTGCTTTAACTG 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 CCATTTGGGTCGACCGTATCATGCAGGCAAGAAAAGACGAATTGGGTGGTGCTTTAACTG 417
Query 416 TTCTTTCGAGCAGCATATCAGCTTCAACATTTATGGCATCCATTGCTTTAACATTGAGTT 475
||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 418 TTCTTTCAAGCAGCATATCAGCTTCAACATTTATGGCGTCTATTGCTTTAACATTGAGTT 477
Query 476 CACTTATCGGCGCGTGGATCGGAAGCTCGCCGGTTAGTATGACTGTTTTTACCGGACATT 535
|||||||||||||||||||||||||||| ||||||| |||||| |||||||| ||| |||
Sbjct 478 CACTTATCGGCGCGTGGATCGGAAGCTCCCCGGTTAATATGACAGTTTTTACGGGAGATT 537
Query 536 TTATCTATGGAGACACGAGTTCAATCACAATGGTCATCAAATACACATCGCTCCTCATAT 595
|| ||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||
Sbjct 538 TTGTCTATGGAGACACAAGTTCAATCACAATGGTCATCAAATACACTTCTCTCCTCATAT 597
Query 596 GTTTCCTAGTTGCATTCTGCTGTTTTATTCAATCCACGAGATGTTTTCTACATGCGAACT 655
||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
Sbjct 598 GTTTCCTAGTTGCATTCTGTTGCTTTATTCAATCCACGAGATGTTTTCTACATGCGAATT 657
Query 656 ATCTTATCACCACTCC-GGGCGAAGATATTCCCCCGGACATGGTGAAGAGATTTGTCTTG 714
||||||| |||||||| ||| ||||||||||| || ||||||||||||||||||||||||
Sbjct 658 ATCTTATTACCACTCCCGGG-GAAGATATTCCGCCAGACATGGTGAAGAGATTTGTCTTG 716
Query 715 AGAGGCGGGAACTATTGGTCGCTAGGTCTTAGGGCTCTTTATTTGGCTCTTGATCTATTG 774
|||||||| |||||||||||| | ||||||||||||||||| ||||||||||||||| ||
Sbjct 717 AGAGGCGGTAACTATTGGTCGGTGGGTCTTAGGGCTCTTTACTTGGCTCTTGATCTACTG 776
Query 775 TTGTGGCTTTTCGGACCGGTTCCGATGTTTATTAACTCGGTTTTGATGGTCATTTGTTTG 834
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 777 TTGTGGCTTTTCGGACCGGTTCCGATGTTTATTAACTCGGTTTTGATGGTTATTTGTTTG 836
Query 835 TATTTTCTCGACTCAAACTCGGTGGCTCAGCCTCTTTATCACCGGACTTTTGAGGCGGAG 894
|||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 837 TATTATCTCGACTCGAACTCGGTGGCTCAGCCTCTTTATCACCGGACTTTCGAGGCGGAG 896
Query 895 CAAATTGTCAAGAAGATGAGAGGAGTTTTGCCTGAACAGTTGACTTTTAGATGTAATTGA 954
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 CAAGTTGTCAAGAAGATGAGAGGAGTTTTGCCTGAACAGTTGACTTTTAGATGTAATTGA 956
Query 955 AAAGAAAATTATTTGATTCTTA--A-TCACTTTGCCAACTTGGGATTT 999
|||||||||||||||||| ||| | ||| |||||||||||| |||||
Sbjct 957 AAAGAAAATTATTTGATTATTATTAATCAATTTGCCAACTTGAGATTT 1004
Score = 119 bits (64), Expect = 5e-26
Identities = 68/70 (97%), Gaps = 0/70 (0%)
Strand=Plus/Plus
Query 1056 TTTATCAATTATTGCATGAGATTTGTGAAAGCCGTACGGAGCATGTTCCGGGAGCGTCTC 1115
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1002 TTTATCAATTATTGCATGAGATTTGAGAAAGCCGTACGGAGCATGTTCCGGGAGCGTCTT 1061
Query 1116 GTCTTATGTT 1125
||||||||||
Sbjct 1062 GTCTTATGTT 1071
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41935208700
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5