BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G46080.1
Length=1316
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494370 jgi|Araly1|494370|fgenesh2_kg.8__186__AT5G46080.1 1757 0.0
> Ahg494370 jgi|Araly1|494370|fgenesh2_kg.8__186__AT5G46080.1
Length=1228
Score = 1757 bits (951), Expect = 0.0
Identities = 1164/1261 (92%), Gaps = 38/1261 (3%)
Strand=Plus/Plus
Query 1 ATTGACCATCTAGACGAAAatttctttcc-t--tttgtcttttttgacctttattttatt 57
|||||||||||||||| |||||| ||||| | |||||||||||||||||||||||||||
Sbjct 1 ATTGACCATCTAGACG-AAATTT-TTTCCTTCATTTGTCTTTTTTGACCTTTATTTTATT 58
Query 58 ttattattCTCTTCGTATATAAATATTACACAACACCCATAATCCATAATCATACATTTA 117
||||||||||||||| | ||| | || || |||||||||||||||
Sbjct 59 TTATTATTCTCTTCG----T--ATA-T-----------AT-AT--ATAATCATACATTTA 97
Query 118 TTTTCTTTGTTGAAATCAAATGGACAAATCTGAAAAAATCGCTTACGCTTCAGTTTTGtc 177
|| ||| ||| ||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 98 --TT-TTTATTG-AATAAAATGGACAAATCTGAAAAAATCGCATACGCTTCAGTTTTGTC 153
Query 178 tcttctctctctttctcttcttcttctcataatcttcctcttcttATTATGCAGaaaaaa 237
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 154 TCTTCTTTCTCTTTCTCTTCTTCTTCTCATAATCTTTCTCTTCTTATTATGCAGAAAAAA 213
Query 238 aCCAAACCGGTCCGACGACGAATATCTTCTTCCAGAAACCAAACCGGCTGGTCTTTCTTA 297
||||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||||
Sbjct 214 ACCAAACCGGTCCGACGACGAATCTCTTCTTCCAGAAACCAAACCGGCCGGTCTTGCTTA 273
Query 298 TTCGTTAACCGAATTAGACTCAGCAACCGACGGATTTAACCAACGACGAATCATCGGTTC 357
| |||||||||| ||||| ||||||||||||||||| ||||| ||||||||||| |||||
Sbjct 274 TCCGTTAACCGACTTAGATTCAGCAACCGACGGATTCAACCAGCGACGAATCATTGGTTC 333
Query 358 TGGTCGGTTAGGAACGGTTTACGCTGCGATTATTCCAGATCATAAAAATCTCGTCGCGGT 417
|||||||||||| |||||||||||||| |||||||||||||||||||| |||||||| ||
Sbjct 334 TGGTCGGTTAGGCACGGTTTACGCTGCTATTATTCCAGATCATAAAAACCTCGTCGCAGT 393
Query 418 TAAAAGAATACATCCCGGTTTGGTTTTGAGTAAACCGGGTTTCGGTTTTTCCACGGTTAT 477
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 394 CAAAAGAATACACCCCGGTTTGGTTTTGAGTAAACCGGGTTTCGGTTTTTCCACGGTTAT 453
Query 478 TAAATCGCTTTCTTCTTCTCATCATCCAAACGTCGTTTCGATTTTAGGATTCTCAGAAGC 537
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 454 TAAATCGCTTTCTTCTTCTCATCATCCAAACGTCGTTTCAATCTTAGGATTCTCAGAAGC 513
Query 538 TCCCGGAGAAAGAATCGTCGTAACAGAATTCGTCGGAGAAGGTAAGAGCTTGAGTGATCA 597
|||||||||||||||||| || |||||||||||||||||||| || ||||||||||||||
Sbjct 514 TCCCGGAGAAAGAATCGTAGTTACAGAATTCGTCGGAGAAGGAAAAAGCTTGAGTGATCA 573
Query 598 CTTACACGGAGGTTCCAATTCAGCGACTGCGGTTGAATTTGGATGGAAAACGCGTTTTAA 657
||||||| || | || |||||| ||||||||||||||| |||||||||||||||||
Sbjct 574 CTTACAC-GAAG----AA-TCAGCGGTTGCGGTTGAATTTGGTTGGAAAACGCGTTTTAA 627
Query 658 AATCGCGGCGGGAGCAGCGAGAGGATTGGAGTATTTACACGAAATCGCAAACCCTAGAAT 717
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 628 AATCGCGGCGGGAGCAGCGAGAGGATTGGAGTATCTACACGAAATCGCAAACCCTAGAAT 687
Query 718 CGTTCACGGTAGATTCACATCATCGAATGTTTTGGTAGACGAGAAATCAACGGCTAAGAT 777
||| |||||| |||| || ||||||||| | ||| ||||||| |||||||||||||||||
Sbjct 688 CGTCCACGGTCGATTTACGTCATCGAATATATTGATAGACGACAAATCAACGGCTAAGAT 747
Query 778 TTGCGATTACGGATTTGGGTTTTTGATTCCGATTGAAAAATCTGGGATTTTTGGGTATAT 837
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 748 TTGCGATTACGGATTTGGGTTTTTGATTCCGATTGAAAAATCTGGGATTTTTGGGTATGT 807
Query 838 AGAAGAAGGTTATTGCAAAGAGAGTGATGTGTATGGATACGGCGTCGTTTTAATGGAGAT 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 808 AGAAGAAGGTTATTGCAAAGAGAGTGATGTGTATGGATACGGCGTCGTTTTAATGGAGAT 867
Query 898 TTTGAGTGGAAGAAGAAGTGAAAATGGATTGATTGTGAAATGGGCAACTCCATTGATTAA 957
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 868 TTTGAGTGGAAGAAGAAGTGAAAATGGATTGATTGTGAAATGGGCAACACCATTGATTAA 927
Query 958 AGAACAGAGATTTGCTGAGCTTTTAGATCCGAGGATTGTTGTTCAAAGTGAGATCAAGAG 1017
|||||||||||||| |||| |||||||| ||||||||||||||||||||||||| |||||
Sbjct 928 AGAACAGAGATTTGGTGAGTTTTTAGATTCGAGGATTGTTGTTCAAAGTGAGATTAAGAG 987
Query 1018 TTTGGTAATAAGATTAGCGAAGGTTGCTTTAGCTTGTGTCGGGAATTCACGGAGGAGTCG 1077
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 988 TTTGGTAATAAGATTAGCGAAGGTTGCTTTAGCATGTGTCGGGAATTCACGGAGGAGTCG 1047
Query 1078 ACCGTCGATTTCTGAAGTGGCGGCGATTTTGAATAGTTTGGAGAGGGAAGGAGGGTGATT 1137
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1048 GCCGTCGATTTCTGAAGTGGCGGCGATTTTGAATAGTTTGGAGATGGAAGGAGGGTGATT 1107
Query 1138 TGGATAATTTTAAAACTTTTGGGGTTTTAGGGATAAAAGTT-GGAATTGAAGGGGTATAG 1196
||||||||||||||| |||||||||||||| ||||||| || |||||| ||||| |||||
Sbjct 1108 TGGATAATTTTAAAAGTTTTGGGGTTTTAGAGATAAAAATTTGGAATT-AAGGGATATAG 1166
Query 1197 GTGTTATTAGGGGAAGAGAAACGTAAATGTTGTATTAATGCCGTGTATATTATATGGTTT 1256
||||||||| ||| || |||||||||||||| ||||||||||||||||||||| ||||
Sbjct 1167 TTGTTATTAGTTGAACAGCAACGTAAATGTTGTTTTAATGCCGTGTATATTATATAGTTT 1226
Query 1257 T 1257
|
Sbjct 1227 T 1227
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49216685847
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5