BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G46090.1
Length=645
Score E
Sequences producing significant alignments: (Bits) Value
Ahg948342 jgi|Araly1|948342|scaffold_800229.1 926 0.0
> Ahg948342 jgi|Araly1|948342|scaffold_800229.1
Length=700
Score = 926 bits (501), Expect = 0.0
Identities = 575/612 (94%), Gaps = 0/612 (0%)
Strand=Plus/Plus
Query 34 ATCAAAGAAGAAACAGTTCCACTCCTGGATGATCAAAATCGAAATCGGGACTTACCTGAC 93
|||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 69 ATCAAAGAAGAAACTGTTCCACTCCTGGATGATCGAAATCGAAATCGGGACTTTCCTGAC 128
Query 94 ATAGAAAGGAACACTATGATGCAAAAGGCAATAGGTAAGACTTTTCAGACAACAGCTAAT 153
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 129 ATAGAAAGGAACACTATGATGCAAAAGGCAATAGGTAAGACTTTTCAGACCACAGCTAAT 188
Query 154 CTAGCTAATCTTTTACCTACGGGGACAGTTCTTGCATTCCAGATTTTATCGCCAATTTGC 213
||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||
Sbjct 189 CTAGCTAATCTTTTACCAACGGGGACAGTTCTTGCGTTCCAGATCTTATCGCCAATTTGC 248
Query 214 ACAAACGTTGGACGCTGCGATCTAACTAGCAGATTCATGACTGCGTTGCTAGTTTCCATC 273
||||| | ||| | ||||||||| |||||||| |||||||||| |||||||||||||||
Sbjct 249 ACAAATGCTGGGCAATGCGATCTAGCTAGCAGAGTCATGACTGCATTGCTAGTTTCCATC 308
Query 274 TGCGGATTCTCTTGTTTCATACTTAGCTTCACAGATTCTTACAAGGATTTGAATGGTAGT 333
|| || ||||||||||||||||||||||||||||||||||||||||| |||||||| | |
Sbjct 309 TGTGGGTTCTCTTGTTTCATACTTAGCTTCACAGATTCTTACAAGGACTTGAATGGAAAT 368
Query 334 GTCTGCTATGGATTTGCAACAATCCATGGTTTCTGGATCATTGATGGCTCAGCTACTCTT 393
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 369 GTCTGCTATGGATTTGCAACAATCCATGGTTTTTGGATAATTGATGGCTCAGCTACTCTT 428
Query 394 CCTCAAGAACTTTCCAAAAGCTACAAACTACGGTTTATCGACTTCGTACATGCCATTATG 453
|||||||||| |||||||||||||||||||| |||||| ||||||||| |||||||||||
Sbjct 429 CCTCAAGAACGTTCCAAAAGCTACAAACTACAGTTTATAGACTTCGTATATGCCATTATG 488
Query 454 TCGTTTCTGGTTTTTGGAGCCGTGGTTTTGTTTGATCAGAATGTGGTTAACTGTTTCTAT 513
||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |
Sbjct 489 TCGTTTCTGGTTTTTGGAGCCGTGGTTTTGTTTGATCAGAATGCGGTTAAATGTTTCTTT 548
Query 514 CCCGAACCATCAGCTGAAGTAGTGGAGCTTCTCACAACTTTGCCTGTAGCTGTAGGAGTC 573
|| ||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||
Sbjct 549 CCTGAACCATCAGCTGAAGTAGCAGAGCTTCTCACAACTTTGCCCGTAGCCGTAGGAGTC 608
Query 574 TTCTGCAGTATGGTGTTCGCTAAATTTCCAACTACACGCCACGGTATTGGTTTTCCCCTC 633
|||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 609 TTCTGCAGTATGGTGTTCGCTACGTTTCCTACTACACGCCACGGTATTGGTTTTCCCCTC 668
Query 634 TCTGCTAAATGA 645
||||||||||||
Sbjct 669 TCTGCTAAATGA 680
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23636208540
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5