BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G46090.1 Length=645 Score E Sequences producing significant alignments: (Bits) Value Ahg948342 jgi|Araly1|948342|scaffold_800229.1 926 0.0 > Ahg948342 jgi|Araly1|948342|scaffold_800229.1 Length=700 Score = 926 bits (501), Expect = 0.0 Identities = 575/612 (94%), Gaps = 0/612 (0%) Strand=Plus/Plus Query 34 ATCAAAGAAGAAACAGTTCCACTCCTGGATGATCAAAATCGAAATCGGGACTTACCTGAC 93 |||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||| Sbjct 69 ATCAAAGAAGAAACTGTTCCACTCCTGGATGATCGAAATCGAAATCGGGACTTTCCTGAC 128 Query 94 ATAGAAAGGAACACTATGATGCAAAAGGCAATAGGTAAGACTTTTCAGACAACAGCTAAT 153 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 129 ATAGAAAGGAACACTATGATGCAAAAGGCAATAGGTAAGACTTTTCAGACCACAGCTAAT 188 Query 154 CTAGCTAATCTTTTACCTACGGGGACAGTTCTTGCATTCCAGATTTTATCGCCAATTTGC 213 ||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||| Sbjct 189 CTAGCTAATCTTTTACCAACGGGGACAGTTCTTGCGTTCCAGATCTTATCGCCAATTTGC 248 Query 214 ACAAACGTTGGACGCTGCGATCTAACTAGCAGATTCATGACTGCGTTGCTAGTTTCCATC 273 ||||| | ||| | ||||||||| |||||||| |||||||||| ||||||||||||||| Sbjct 249 ACAAATGCTGGGCAATGCGATCTAGCTAGCAGAGTCATGACTGCATTGCTAGTTTCCATC 308 Query 274 TGCGGATTCTCTTGTTTCATACTTAGCTTCACAGATTCTTACAAGGATTTGAATGGTAGT 333 || || ||||||||||||||||||||||||||||||||||||||||| |||||||| | | Sbjct 309 TGTGGGTTCTCTTGTTTCATACTTAGCTTCACAGATTCTTACAAGGACTTGAATGGAAAT 368 Query 334 GTCTGCTATGGATTTGCAACAATCCATGGTTTCTGGATCATTGATGGCTCAGCTACTCTT 393 |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct 369 GTCTGCTATGGATTTGCAACAATCCATGGTTTTTGGATAATTGATGGCTCAGCTACTCTT 428 Query 394 CCTCAAGAACTTTCCAAAAGCTACAAACTACGGTTTATCGACTTCGTACATGCCATTATG 453 |||||||||| |||||||||||||||||||| |||||| ||||||||| ||||||||||| Sbjct 429 CCTCAAGAACGTTCCAAAAGCTACAAACTACAGTTTATAGACTTCGTATATGCCATTATG 488 Query 454 TCGTTTCTGGTTTTTGGAGCCGTGGTTTTGTTTGATCAGAATGTGGTTAACTGTTTCTAT 513 ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| | Sbjct 489 TCGTTTCTGGTTTTTGGAGCCGTGGTTTTGTTTGATCAGAATGCGGTTAAATGTTTCTTT 548 Query 514 CCCGAACCATCAGCTGAAGTAGTGGAGCTTCTCACAACTTTGCCTGTAGCTGTAGGAGTC 573 || ||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||| Sbjct 549 CCTGAACCATCAGCTGAAGTAGCAGAGCTTCTCACAACTTTGCCCGTAGCCGTAGGAGTC 608 Query 574 TTCTGCAGTATGGTGTTCGCTAAATTTCCAACTACACGCCACGGTATTGGTTTTCCCCTC 633 |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| Sbjct 609 TTCTGCAGTATGGTGTTCGCTACGTTTCCTACTACACGCCACGGTATTGGTTTTCCCCTC 668 Query 634 TCTGCTAAATGA 645 |||||||||||| Sbjct 669 TCTGCTAAATGA 680 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23636208540 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5