BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G46110.4
Length=2037
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494366 jgi|Araly1|494366|fgenesh2_kg.8__182__AT5G46110.1 2881 0.0
> Ahg494366 jgi|Araly1|494366|fgenesh2_kg.8__182__AT5G46110.1
Length=1981
Score = 2881 bits (1560), Expect = 0.0
Identities = 1883/2025 (93%), Gaps = 78/2025 (4%)
Strand=Plus/Plus
Query 1 ATTATTATCTTCCaaaaaaaCAAAATTATACAGATGATGATGGTGATATGGAACTTCGAT 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 13 ATTATTATCTTCCAAAAAAACAAAATTATACAGATGATGA---TGATATGGAACTTCGAT 69
Query 61 TGGCTAATATTCACTGTG--TCTCTAAAAACCATCCACTTATCAAGATAAGATGGACCCT 118
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 70 TGGCTAATATTCACTGTGTCTCTCTAAAAACCATCCACTTATCAAGATAAGATGGACCCT 129
Query 119 ACACTCATCCAATCTAAACCAGTATCTCAAGATTCTTATCTAATTACATCATTCTCTACC 178
||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||| |||
Sbjct 130 ACACTCATCCAATCTAAACCAATATCTCACGATTCTTATCTAATCACATCATTCTCAACC 189
Query 179 GTTAGATGAAATTGACCATTAACCCTACCATAAC-TCCATACACCGCGAGATACTGGATT 237
||||||| ||||| |||||||||| || ||| || ||||||||||||| | ||| ||||
Sbjct 190 GTTAGATCAAATTCACCATTAACCGTATCAT-ACGCCCATACACCGCGACACACTAGATT 248
Query 238 AACCAAATCGAGATCATCGTAGCCGTCCGATCAACAAGTACCATCTCTTGAAATACTCGA 297
||||||||| | |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 249 AACCAAATCAAAATCATCGTAGCCGTCCGATCAACAAGTATCATCTCTTGAAATACTCGA 308
Query 298 AATCCTCATAAGTCCG-TCCCTCTTTGCTCTCACTATC-AAAACTCTGAATTTCGATTTC 355
|| ||||||| | || | |||||||||||||||| || |||||||||||||||||||||
Sbjct 309 AAACCTCATATCTTCGCTTCCTCTTTGCTCTCACTGTCTAAAACTCTGAATTTCGATTTC 368
Query 356 AATGGAGTCACGCGTGCTGTTACGCGCCACCGCGAATGTCGTTGGAATTCCGAAATTGAG 415
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 369 AATGGAGTCACGCGTGCTGTTACGCGCCACCGCGAATGTCGTCGGAATTCCGAAATTGAG 428
Query 416 ACGACCAATCGGAGCGATCCACCGTCAATTCAGCACTGCA---TCGTCTTC--C-TCGTT 469
|||||| ||||||||||||||||||||||||||||||||| |||||||| | |||||
Sbjct 429 ACGACCTATCGGAGCGATCCACCGTCAATTCAGCACTGCATCGTCGTCTTCGTCGTCGTT 488
Query 470 CTCGGTTAAACCAATCGGAGGAATCGGAGAGGGAGCGAATCTGATCTCCGGTCGTCAGCT 529
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 489 CTCGGTTAAACCAATCGGAGGAATCGGAGAAGGAGCGAATCTGATCTCCGGTCGTCAGCT 548
Query 530 TCGTCCAATTCTTCTTCTCGATTCGTCGGCGATCAACGGAGGAGAGAAAAGAGAAATTCT 589
|||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 549 TCGTCCGATTCTTCTTCTCGATTCGTCGGCGATCAACGGCGGAGAGAAAAGAGAGATTCT 608
Query 590 CAAACCGGTTAAAGCCGCCGCTGCTGAAGGTGGAGATACCGCTGGGGATGCTAAAGTTGG 649
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 609 CAAACCGGTTAAAGCCGCCGCTGCTGAAGGTGGAGATACCGCTGGGGAAGCTAAAGTTGG 668
Query 650 ATTCCTCGCCAAGTATCCATGGCTAGTCACTGGATTCTTCTTCTTCATGTGGTACTTCTT 709
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 669 ATTCCTCGCCAAGTATCCATGGCTAGTCACTGGGTTCTTCTTCTTCATGTGGTACTTCTT 728
Query 710 GAATGTGATTTTCAACATCCTTAACAAGAAGATCTATAATTACTTCCCTTATCCCTATTT 769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 729 GAATGTGATTTTCAACATCCTTAACAAGAAGATCTATAATTACTTCCCTTATCCCTATTT 788
Query 770 TGTATCGGTGATACACTTGTTCGTGGGAGTTGTTTACTGCTTGATCAGCTGGTCCGTGGG 829
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 789 TGTATCGGTGATACACTTGTTCGTGGGAGTTGTATACTGCTTGATCAGCTGGTCCGTGGG 848
Query 830 TCTTCCTAAACGTGCCCCGATTGACTCGAACCTCCTCAAGGTATTGATACCAGTCGCAGT 889
||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 849 CCTTCCTAAACGAGCCCCAATTGACTCGAACCTCCTCAAGGTATTGATACCAGTTGCAGT 908
Query 890 CTGTCACGCCTTAGGCCATGTCACTAGCAATGTCTCTTTCGCTGCGGTTGCTGTCTCCTT 949
|||||||||| |||||||||||||||||||||| || ||||| |||||||||||||||||
Sbjct 909 CTGTCACGCCATAGGCCATGTCACTAGCAATGTTTCCTTCGCCGCGGTTGCTGTCTCCTT 968
Query 950 CACTCACACCATCAAAGCACTTGAGCCATTCTTCAATGCGGCTGCTTCTCAATTCATTAT 1009
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 969 CACCCACACCATCAAAGCACTTGAGCCATTCTTCAATGCGGCTGCTTCTCAATTCATTAT 1028
Query 1010 GGGACAATCCATCCCCATAACACTATGGTTGTCTCTAGCTCCTGTTGTTCTTGGTGTTGC 1069
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1029 GGGACAATCCATCCCCATAACACTATGGTTGTCTCTAGCTCCTGTTGTTCTTGGTGTTGC 1088
Query 1070 AATGGCTTCACTAACTGAGCTATCATTCAACTGGCTCGGTTTCATCAGTGCTATGATATC 1129
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1089 AATGGCTTCACTAACTGAGCTATCATTCAACTGGCTCGGTTTCATCAGTGCCATGATCTC 1148
Query 1130 AAACATTTCTTTCACTTACCGAAGCATCTTCTCCAAGAAAGCCATGACTGATATGGACAG 1189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1149 AAACATTTCTTTCACTTACCGAAGCATCTTCTCCAAGAAAGCCATGACTGATATGGACAG 1208
Query 1190 TACAAATGTCTACGCTTACATCTCCATCATCGCACTCTTCGTCTGCATTCCTCCTGCCAT 1249
||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1209 TACCAATGTCTACGCTTACATCTCCATTATCGCTCTCTTCGTCTGCATTCCTCCTGCCAT 1268
Query 1250 CATCGTTGAAGGTCCTAAACTACTTAACCATGGTTTCGCCGACGCGATTGCTAAAGTTGG 1309
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1269 CATCGTTGAAGGTCCTAAACTACTGAACCATGGTTTCGCCGACGCGATTGCTAAAGTCGG 1328
Query 1310 AATGACTAAATTCATCTCTGATCTCTTCTGGGTTGGAATGTTTTACCATCTCTACAATCA 1369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1329 AATGACTAAATTCATCTCTGATCTCTTCTGGGTTGGAATGTTTTACCATCTCTACAATCA 1388
Query 1370 GCTGGCTACCAATACCTTGGAGAGGGTTGCACCGCTGACTCACGCGGTTGGAAACGTTCT 1429
| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1389 GTTGGCTACTAATACCTTGGAGAGGGTCGCACCGCTGACTCACGCGGTTGGAAACGTTCT 1448
Query 1430 GAAACGTGTGTTCGTGATCGGTTTCTCCATCGTTATCTTCGGAAACAAGATATCGACACA 1489
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1449 GAAACGTGTGTTCGTGATCGGTTTCTCCATTGTTATCTTCGGAAACAAGATATCGACACA 1508
Query 1490 GACAGGTATAGGAACAGGAATAGCCATTGCTGGAGTTGCAATGTACTCTATCATTAAGGC 1549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1509 GACAGGTATAGGAACAGGAATAGCCATTGCTGGAGTTGCAATGTACTCTATCATTAAGGC 1568
Query 1550 CAAGATCGAAGAAGAGAAACGGGTCACAAGGAAAGAAAGCATAGAAAGC-A-GCTGAAGA 1607
|||||||||||||||||||||| || | ||||||||||| |||| ||| | | | ||||
Sbjct 1569 CAAGATCGAAGAAGAGAAACGG--CA-A-GGAAAGAAAGCTTAGAGAGCGACG-T-AAGA 1622
Query 1608 CGGCGGTCGACAGTTGCATAAACAAGTTCTCCGATGGatatatatatatctatataataa 1667
||||||||||| ||||||||||||||| |||||||| | |||||| | | |||||||||
Sbjct 1623 CGGCGGTCGACGGTTGCATAAACAAGTCCTCCGATG-A-ATATAT-T-T--ATATAATAA 1676
Query 1668 ataACCAAATGCAATAGTATGTTGTATTGTACCATCAACCATTGttttcgagtttttcct 1727
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1677 ATAACCAAATGCAATAGTATGTTGTATTGTACCATCAACCATTGTTTTCGAGTTTTTCCT 1736
Query 1728 ttctttgttttttttttGCTTTCTGAAAAGTTATATATAAattttttattctgcttcttc 1787
|||||||||||||| ||||||||||||||||||||||| |||||||||||| || ||
Sbjct 1737 TTCTTTGTTTTTTT---GCTTTCTGAAAAGTTATATATAA-TTTTTTATTCTG-TT-TT- 1789
Query 1788 tctttttaatggagaacattttcatttccatttcttctGATATGCAATTATCTTAACGGA 1847
| |||||||||||||| |||||| ||| | |||||||||||||||| |||||
Sbjct 1790 T------AATGGAGAACATTTCCATTTC--TTT-T---GATATGCAATTATCTTGACGGA 1837
Query 1848 TAAAAGGCATAATAATGTATTTATTTGCTCTTTCTCTTGGAGCATATACCCATCATCGTG 1907
|||||||||||||||||||||||||||||||| | || |||||||||||
Sbjct 1838 TAAAAGGCATAATAATGTATTTATTTGCTCTT--------A---TA--CCCATCATCGT- 1883
Query 1908 ACGTAGAGCTTGAGGTTTAA-TTTAT-TTCT-TATAAC--ATT-TTT--CTCCTTGCTAA 1959
| | || || | ||||| ||||| || | ||||| ||| ||| ||| |||||||
Sbjct 1884 A-G-AG---TTAAATTTTAAATTTATCTT-TGTATAAAGTATTCTTTTGCTC-TTGCTAA 1936
Query 1960 TTTTGT-TTTTCAACTAGTAATTTGTTATATATTATTTTTGTAAT 2003
|||||| |||||| || |||||| |||||||||| ||||||||||
Sbjct 1937 TTTTGTGTTTTCATCTGGTAATTGGTTATATATTGTTTTTGTAAT 1981
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76599482695
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5