BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G46115.1

Length=421
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg494363 jgi|Araly1|494363|fgenesh2_kg.8__179__AT5G46115.1          486    4e-137


> Ahg494363 jgi|Araly1|494363|fgenesh2_kg.8__179__AT5G46115.1
Length=343

 Score =  486 bits (263),  Expect = 4e-137
 Identities = 325/353 (92%), Gaps = 11/353 (3%)
 Strand=Plus/Plus

Query  2    AAAAATGGCTCAATCACTAAACCTTACGTCTCTTCTCTGTCTCACCTTCTTCATCTCATC  61
            ||||||||||||||||||  |    ||||||||||||||||||| |||||||||| ||||
Sbjct  1    AAAAATGGCTCAATCACT--A----ACGTCTCTTCTCTGTCTCA-CTTCTTCATCGCATC  53

Query  62   TTTCTAGC-TTACGCAAACACAAGCAAGAAACCGCCAAACTTTAACCGGAGTAACCGATA  120
            |||||  | || ||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct  54   TTTCTTTCATT-CGCAAACACAAGCAAGAAACCGCCAAATTTTAACCGGAGTAACCGTTA  112

Query  121  AAAACCATATTTTATTCATGCCAGAGAATCACCGGAGCACGATGGATGAGGAAAACGAGC  180
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  113  AAAACCATATTTTATTCATGCCAGAGAATCACCGGAGCACGGTGGATGAGGAAAACGAGC  172

Query  181  AAGAGCCAGCCTTTGTCCGAGAGACTGGACATGGTTATGGTCTCTATGGCCATCGTGAGA  240
            ||||||||||||||||||||||||| |||||||| ||||||||||| || |||| |||||
Sbjct  173  AAGAGCCAGCCTTTGTCCGAGAGACAGGACATGGCTATGGTCTCTACGGTCATCTTGAGA  232

Query  241  TTCACACCAACAACGACGAAAACAAGAACAGTGACAACGATCAATTTTACTATAGAAGCG  300
            ||||||  ||||||||||||||| | |||||||||||||||||||||||||| |||||||
Sbjct  233  TTCACA--AACAACGACGAAAACGATAACAGTGACAACGATCAATTTTACTACAGAAGCG  290

Query  301  ACGCTTATGGAAACCGCGATGGTAGATTTAAGTAGAGAGATTGAGATTTGTTT  353
            ||||||||||||| |||||||||||||||||||| ||||||||| ||||||||
Sbjct  291  ACGCTTATGGAAATCGCGATGGTAGATTTAAGTAAAGAGATTGATATTTGTTT  343



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15147768833


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5