BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G46130.1
Length=1369
Score E
Sequences producing significant alignments: (Bits) Value
Ahg948337 jgi|Araly1|948337|scaffold_800224.1 1779 0.0
Ahg494361 jgi|Araly1|494361|fgenesh2_kg.8__177__AT5G46140.1 484 5e-136
> Ahg948337 jgi|Araly1|948337|scaffold_800224.1
Length=1172
Score = 1779 bits (963), Expect = 0.0
Identities = 1105/1174 (94%), Gaps = 7/1174 (1%)
Strand=Plus/Plus
Query 76 GTTTTAAAGATTCTA-AAAAATGTCTCAACCTCTCATACGAATCTTGAATCCCCTTGTCT 134
||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||
Sbjct 1 GTTTTAAAGATTCTAGAAAAATGTCTCAACCTCTCAGCCGAATCTTGAAGCCCCTTGTCC 60
Query 135 ACACAAATGTCCTTAGAAAAAACAACTTGGTTAGATGGTGTTCGTCTACGCCAATCTACC 194
||||||||||||||||||| || ||||||||| | |||||||||||||| ||||||||||
Sbjct 61 ACACAAATGTCCTTAGAAACAATAACTTGGTTCGGTGGTGTTCGTCTACACCAATCTACC 120
Query 195 CTTTTTTGTTAATTGACCACCTCCTT-AAGATCGGAGGTTCTTCAAATGGTAGCAGCTCG 253
||||| |||||||||||||||||||| ||| ||||||||||||||||||||| || ||||
Sbjct 121 CTTTTATGTTAATTGACCACCTCCTTAAAG-TCGGAGGTTCTTCAAATGGTATCAACTCG 179
Query 254 ATATCTAGAAGGTCCGGATCAGAGGGTGAAAACGAAATCATAATTAAGAGCAAGTTTTTG 313
||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 180 ATATCAAGAAGGTCCGGATCAGAGGGTGAAAATGAAATCATAATTAAGAACAAGTTTTTG 239
Query 314 GCTGGAGAAGTCTGCGAGGCAATGAGTATGGGATTGAATCAAAGTGGAGTGAATATTCAC 373
||||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||
Sbjct 240 GCTGGAGAAGTCTGCCAGGCAATGACTAAGGGATTGAATCAAAGTGGAGTGAATATTCAC 299
Query 374 ATGAAGGAAAACACATCCCTCCGTGATATGGACAACGTTCGTCTAAATATCTATTACAAG 433
||||||||||| |||| ||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 300 ATGAAGGAAAAAACATTCCTCCGTGATATGGATAACGTTCGTCTAAACATCTATTACAAG 359
Query 434 CCCTCTGACCCTAAATCAAAATCTGTTTCTGTTCATCTACCTCCTCTTCCAAAAGGCTCT 493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CCCTCTGACCCTAAATCAAAATCTGTTTCTGTTCATCTACCTCCTCTTCCAAAAGGCTCT 419
Query 494 CAAATCCAAAACATTGCCATGACCTCTCTTCCTGACCTAAAAAATGATGATTGGGTCGTT 553
|||||||||||| ||| |||| ||| ||||||||||||| ||||||||||||||||||||
Sbjct 420 CAAATCCAAAACCTTGTCATGTCCTGTCTTCCTGACCTAGAAAATGATGATTGGGTCGTT 479
Query 554 GCTATCAAGTTTTCGGTATCTCAGCTTATGCTCTATAGGCATAAAGACTTACGGTGGATC 613
|||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 480 GCTATCAAGTTTTCGGTATCTCGGCTTATGCTATATAGGCATAAAGACTTACGGTGGATC 539
Query 614 AATATCGAAACCACGCATGGGCATGAGTGTATATGCCCATACTCAAGTCTCAAGTACTCT 673
||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 540 GATATCGAAACCACGCATGGGCATGAGTCTATATGCCCATACTCAAGTCTCATGTACTCT 599
Query 674 AAGAAAGAGCAAAGATTTTACACTTCAACTCCTGGAGGCGAT-TGGATGTGCTCATTTGG 732
|||||||| ||||||||||||||| |||||||||| |||| | | |||||||||||||
Sbjct 600 AAGAAAGATCAAAGATTTTACACTCCAACTCCTGGTGGCG-TATACTTGTGCTCATTTGG 658
Query 733 TCTCAACTTCAAAGAGAAAGACGAGCCCACGTATCATATAA-TTGACAAAAAAGATCTTC 791
||||||||||||||||||||||||||||| |||| || ||| ||| |||||||||||||
Sbjct 659 TCTCAACTTCAAAGAGAAAGACGAGCCCAAGTATGATTTAATTTG-TAAAAAAGATCTTC 717
Query 792 CTCAGTATATGTTGTATGAGTTGGAGGAGATGAATTCGTTTACCAGGACAGATCATCTAG 851
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 CTCAATATATGTTGTACGAGTTGGAGGAGATGAATTCGTTTACCAGGACAGATCATCTAG 777
Query 852 TGGAGTCACCCTCCGGGGAACAATTCCTCATCTCATGGTACTATGGGGACGCCTTTGAGT 911
|||||||||| |||||||||||||||||||||||||||||||| || |||| ||||||||
Sbjct 778 TGGAGTCACCTTCCGGGGAACAATTCCTCATCTCATGGTACTACGGAGACGACTTTGAGT 837
Query 912 CAGACACAGTCGTGCACAAAACAAAGCGGTTCTTGGTGTTTAAAGAGAAAGAAAATGCTA 971
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| | ||
Sbjct 838 CAGACGCAGTCGTGCACAAAACAAAGCGGTTCTTGGTGTTTAAAGAGCAAGAAAAGGTTA 897
Query 972 AAAGACACAAAGATATGTATTACACTGAAAATATTGGAGATCTTTGTATTTTTCTTGGAC 1031
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 CAAGAGACAAAGATATGTATTACACTGAAAATATTGGAGATCTTTGTATTTTTCTTGGAC 957
Query 1032 ATGGTGAACCTATGTGTGTCCCAGCAAGCTCGTCTCCAGGTCTTAAGCCTAATTGCATCT 1091
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 ATGGTGAACCTATGTGTGTCCCAGCAAGCTCGTCTCCAGGTCTTAAGCCTAATTGCATCT 1017
Query 1092 ATTTCGCGGGACATAACTTTGGTGTTTACGATATCACGACGCAAACAATCACTCTCTTCT 1151
||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||
Sbjct 1018 ATTTCGCGGGACATAACTTTGGTGTTTTCGATATCACCTCCCAAACAATCACTCTCTTCT 1077
Query 1152 ACACAGAGGAAGGTCCATTAAGATCCACTGCATTTCCTTACTGGCCTCATCCATTTTCAC 1211
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 1078 ACACAGAGGAAGGTCCATTAAGATCCACTGCATTTCCTTTCTGGCCTCATCCATTCTCAC 1137
Query 1212 TCACTCCTACCTAGTTGGTATGGTGTTGGGTTTT 1245
||||||||| ||||||| ||||||||||||||||
Sbjct 1138 TCACTCCTAGCTAGTTGATATGGTGTTGGGTTTT 1171
> Ahg494361 jgi|Araly1|494361|fgenesh2_kg.8__177__AT5G46140.1
Length=1329
Score = 484 bits (262), Expect = 5e-136
Identities = 626/789 (79%), Gaps = 76/789 (10%)
Strand=Plus/Plus
Query 476 CCTCTTCCAAAAGGCTCTCAAATCCAAAACATTGCCATGACCTCTCT-TCCTGACCTAAA 534
|||||||| ||||| |||||| |||||||||| || ||| ||||| | ||||||| ||||
Sbjct 512 CCTCTTCCTAAAGGTTCTCAAGTCCAAAACATAGCGATGTCCTCT-TGTCCTGACATAAA 570
Query 535 AAATGATGATTGGGTCGTTGCTATCAAGTTTTC-GGTATCTCAGCTT-ATGCTCTATAGG 592
||||| |||||||| | ||| |||||||||| || |||| || || | ||| |||||
Sbjct 571 CAATGAAGATTGGGTTATGGCTGTCAAGTTTTCAGG-ATCTAAG-TTGAAGCTTTATAGA 628
Query 593 CAT---AAAGACTTACGGTGGATCAATATCGAAACCACGCATGGGCATGAGTGTATATG- 648
||| |||||||| ||||||||| |||||||||||| | | ||||||| |||| |
Sbjct 629 CATAACAAAGACTTTCGGTGGATCGATATCGAAACCA--C-T---CATGAGTCTATAAGT 682
Query 649 CC-CATACTCAAGTCTCAAGTACTCTAAGAAAGAGCAAAGATTTTACACTT-CAACTCCT 706
|| ||| || ||||||| ||| ||||||||||| ||||| || ||| || ||||||||
Sbjct 683 CCTCAT--TCGAGTCTCATGTATTCTAAGAAAGATCAAAGGTTCTAC-GTTCCAACTCCT 739
Query 707 GGAGGCGATTGGATGTGCTCATTTGGTCTCAACTTCAAAGAGAAAGACGAGC-CCACGTA 765
||| || ||| ||||||| |||| |||||||||||| ||||| || ||| | | ||
Sbjct 740 GGATGCAATTACTTGTGCTCCTTTGATCTCAACTTCAAGGAGAAGGATAAGCTCGA-GT- 797
Query 766 TCATATA-AT-TGACAAAAAAGATCTTCCTCAGTAT-ATGTTGTAT-GAGTTGGA-GGAG 820
| | | | || ||||||||||||||| ||||| | ||||| | ||||| || ||||
Sbjct 798 TTGTCGAGCTGCGA-AAAAAAGATCTTCCTAAGTATGA-GTTGT-TCGAGTT-GATGGAG 853
Query 821 ATGAATTCGTTTACCAGGACAGATCATC-TAGTGGAGTCACCCTCCGGGGAACAATTCCT 879
|||||||| |||||||||||||| || | | ||||||||||||||||| ||||| |||||
Sbjct 854 ATGAATTCCTTTACCAGGACAGACCA-CATGGTGGAGTCACCCTCCGGTGAACACTTCCT 912
Query 880 CATCT-CATGGTACTATGGGGACGCCTTTG-A--GT-C--AGA---CACAGTCGTGCACA 929
|| | ||||||||||||| |||| |||| | | | ||| |||||| | ||||
Sbjct 913 TAT-TACATGGTACTATGGCGACGAGTTTGAACTTTACAAAGAGTTAACAGTCATTCACA 971
Query 930 AAACAAAG-CGGTTCTTGGTGTTTA-A-A-GA-GAA-AG-AAAATGCTA-AAAGACACAA 981
|||||||| | |||| |||||||| | | || ||| || || | || ||| | ||||
Sbjct 972 AAACAAAGTC-GTTCAAGGTGTTTAGAGAGGATGAACAGTTAACCGATAGAAA-A-ACAA 1028
Query 982 AGA-T-ATGTATTACACTGAAAATATTGGAGATCTTTGTATTTTTCTTGGACATGGTGAA 1039
| | | |||| |||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1029 A-ATTCATGTCTTACACCGAAAACATTGGAGATCTTTGTATTTTTCTTGGACATGGTGAA 1087
Query 1040 CCTATG-TGTGTCCCAGCAAGCTCGTCT-CCAGGTCTTAAGCCTAATTGCATCTATTTC- 1096
|| | ||||||||||| ||| | | | || |||||||||||||||||||||||||||
Sbjct 1088 GCT-TCATGTGTCCCAGCGAGCAC-TATTCCTGGTCTTAAGCCTAATTGCATCTATTTCA 1145
Query 1097 GCGGGACATAACTTTGGTGTTTACGATATCACGACGCAAACAAT-CACTCTCTTCTAC-A 1154
| ||||||||||| |||||||| ||||||||| || ||||| | |||| ||||| || |
Sbjct 1146 G-GGGACATAACTATGGTGTTTTCGATATCACCACCCAAACT-TGCACTGTCTTC-ACCA 1202
Query 1155 -CAGAGGAAGGTCCATTAAGATCCACTGCA-TTTCCTTACT-GGCCTCATCCATTTTCAC 1211
| || |||||| |||||| |||||| || ||||||| || ||||||||||| |||| |
Sbjct 1203 AC-GATGAAGGTTTATTAAGCTCCACT-CAATTTCCTT-CTTGGCCTCATCCACTTTCGC 1259
Query 1212 TCACTCCTA 1220
|||||||||
Sbjct 1260 TCACTCCTA 1268
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51237200448
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5