BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G46140.1
Length=1409
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494361 jgi|Araly1|494361|fgenesh2_kg.8__177__AT5G46140.1 1958 0.0
Ahg948337 jgi|Araly1|948337|scaffold_800224.1 486 2e-136
> Ahg494361 jgi|Araly1|494361|fgenesh2_kg.8__177__AT5G46140.1
Length=1329
Score = 1958 bits (1060), Expect = 0.0
Identities = 1249/1338 (93%), Gaps = 22/1338 (2%)
Strand=Plus/Plus
Query 24 aaaaaGATTATTCTCGTCTTTAATGTCAACTTGGTGTTCAAG-ATAAATCTGTCTAGAGA 82
||||| |||||||||||||||||||||||||||||||||||| |||||||| | ||||||
Sbjct 1 AAAAATATTATTCTCGTCTTTAATGTCAACTTGGTGTTCAAGCATAAATCTCTATAGAGA 60
Query 83 AGAC--GAGAAGATCCACGA-TAAAAATCATTAACTCAACATAGTTTAGAGATTTTAGAA 139
|||| |||||||||||| | |||||||||| | ||||||||||||||||||||||||||
Sbjct 61 AGACGAGAGAAGATCCAC-ACTAAAAATCATCACCTCAACATAGTTTAGAGATTTTAGAA 119
Query 140 ATATGCCTCAACTTCTCAGCCAAATCTTGAAGCCTTTTGTCAACAAAAATGTCTTCAGAC 199
|||||||||||||| |||| ||||| ||||| || |||||||||||||| ||||||||||
Sbjct 120 ATATGCCTCAACTTTTCAGTCAAATGTTGAAACCCTTTGTCAACAAAAACGTCTTCAGAC 179
Query 200 ACAACATAATGGTTCGGACGTGGCGTTCGTCTACGCAAAGCCACGGTTGCTACCCGATGA 259
|||||||||||||||||||||||||||||||||||||||||| |||| |||||||| | |
Sbjct 180 ACAACATAATGGTTCGGACGTGGCGTTCGTCTACGCAAAGCCTCGGTAGCTACCCGTTTA 239
Query 260 TGATGATTGACCACATCCTTAAGGTCGGAGATTCTTCAGATGGTCGCGTAGAGAGAGGGG 319
|| | |||||||||||| ||||||| ||||||||||||||||||||| |||||||||| |
Sbjct 240 TGTTAATTGACCACATCATTAAGGTGGGAGATTCTTCAGATGGTCGCATAGAGAGAGGCG 299
Query 320 ACGAATCATTAGGTGAAAAAGAGGTCTGGATTACA-GACCCGAAACTAGCTGAAGTTGTT 378
|||||||| ||||||||||||| || | ||||| | ||||||||||| ||||||||||||
Sbjct 300 ACGAATCAATAGGTGAAAAAGAAGTTTTGATTA-AGGACCCGAAACTCGCTGAAGTTGTT 358
Query 379 CGTAGTTCAATG-ATATCATATTAAACCAAAGGGGACAAGATATTCACATGGTGGAAAAG 437
||||| ||||| |||||| ||| ||||||||||||| |||||||||||||||||| |||
Sbjct 359 CGTAGAACAATGAATATCAAATTTAACCAAAGGGGACGAGATATTCACATGGTGGAGAAG 418
Query 438 ACAGAGTATACACTCCCCAAGTTTATTGATAATGTTCATCTCTACATGGAACACATATCA 497
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 419 ACAGAGTATACACTCCCCAAGTTTATTGATAATGTTCATCTCTACATGGAATACATATCA 478
Query 498 TCTCGAAACATAACCGAGAATTTTTACTTTCCACCTCTTCCTAAAGGTTCTCAAATCCAA 557
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 479 TCTCGAAACATAACCAAGAATTTTTACTTTCCACCTCTTCCTAAAGGTTCTCAAGTCCAA 538
Query 558 AACATAGCGATGTCCTCTTGTCCTGACATAAACAATGAAGATTGGGTTATGGCTGTCAAG 617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 AACATAGCGATGTCCTCTTGTCCTGACATAAACAATGAAGATTGGGTTATGGCTGTCAAG 598
Query 618 TTTTCAGGATCTAAGTTGAAGCTTTATAGACATAACAAAGACTTTCGGTGGATCGATATC 677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 TTTTCAGGATCTAAGTTGAAGCTTTATAGACATAACAAAGACTTTCGGTGGATCGATATC 658
Query 678 GAAACCACGCATGAGTCTATAAGCCCTCATTCCAGTCTCATGTATTCTAAGAAAGATCAA 737
|||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 659 GAAACCACTCATGAGTCTATAAGTCCTCATTCGAGTCTCATGTATTCTAAGAAAGATCAA 718
Query 738 AGGTTCTACGTTCCAACTCCTGGATGCAATTACTTGTGCTCCTTTGATCTCAACTTCAAG 797
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 AGGTTCTACGTTCCAACTCCTGGATGCAATTACTTGTGCTCCTTTGATCTCAACTTCAAG 778
Query 798 GAGAAGGATAAGCTCGAGTTTGTCGAGGTGCGAAAAACAGATCTTCCTAAGTATGAATTG 857
||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||
Sbjct 779 GAGAAGGATAAGCTCGAGTTTGTCGAGCTGCGAAAAAAAGATCTTCCTAAGTATGAGTTG 838
Query 858 TTCGAGTTTATGGAGATAAATTCCTTTACCAGGACAGACCACATGGTGGAGTCATCCTCC 917
|||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 839 TTCGAGTTGATGGAGATGAATTCCTTTACCAGGACAGACCACATGGTGGAGTCACCCTCC 898
Query 918 GGTGAACAATTCCTTATCT-CATGGTACTATGGGGACGAGTGTAAACTTAATTACAAAGA 976
|||||||| |||||||| | ||||||||||||| ||||||| | ||||| | |||||||
Sbjct 899 GGTGAACACTTCCTTAT-TACATGGTACTATGGCGACGAGTTTGAACTT--T-ACAAAGA 954
Query 977 GTTAACAGTCATTCACAACACAAAA-CAATTCAAGGTGTTTAGAGAGAAAGAAGAGTTAA 1035
|||||||||||||||||| ||||| | |||||||||||||||||| | ||| ||||||
Sbjct 955 GTTAACAGTCATTCACAAAACAAAGTCG-TTCAAGGTGTTTAGAGAGGATGAACAGTTAA 1013
Query 1036 CCGATAGAAAAACAAAATTCATGTCTTACACCGAAAACATTGGAGATCTTTGTATTTTTC 1095
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 CCGATAGAAAAACAAAATTCATGTCTTACACCGAAAACATTGGAGATCTTTGTATTTTTC 1073
Query 1096 TTGGACATGGTGAAGCTTTGTGTATCCCAGCGAGCACCATTCCTGGTCTAAAGCCTAATT 1155
|||||||||||||||||| ||| ||||||||||||| ||||||||||| ||||||||||
Sbjct 1074 TTGGACATGGTGAAGCTTCATGTGTCCCAGCGAGCACTATTCCTGGTCTTAAGCCTAATT 1133
Query 1156 GCATCTATTTC-GCGGGACATAACTATGGTGTTTTCGATATCACCACCCAAACTTGCTA- 1213
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1134 GCATCTATTTCAG-GGGACATAACTATGGTGTTTTCGATATCACCACCCAAACTTGC-AC 1191
Query 1214 TCTCTTCTCCACCGATGAAGGTCTGCTAAGCTCCACTCAATTTCCTTCGTGGCCTCATCC 1273
| ||||| ||| |||||||||| | |||||||||||||||||||||| |||||||||||
Sbjct 1192 TGTCTTCACCAACGATGAAGGTTTATTAAGCTCCACTCAATTTCCTTCTTGGCCTCATCC 1251
Query 1274 ACTTTCGCTCACTCCTAATTAATATGATGTCATGTTGTATTTTTT---ATATGCTTTATT 1330
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1252 ACTTTCGCTCACTCCTAATTAATATGATGTCATGTTGTATTTTTTTTTATATGCTTTATT 1311
Query 1331 TGAAAGAACACTTTCTAC 1348
|||||||||||||| |||
Sbjct 1312 TGAAAGAACACTTTTTAC 1329
> Ahg948337 jgi|Araly1|948337|scaffold_800224.1
Length=1172
Score = 486 bits (263), Expect = 2e-136
Identities = 626/789 (79%), Gaps = 73/789 (9%)
Strand=Plus/Plus
Query 531 CCTCTTCCTAAAGGTTCTCAAATCCAAAACATAG-CGATGTCCTCT-TGTCCTGACATA- 587
|||||||| ||||| ||||||||||||||| | | | ||||||| | | ||||||| ||
Sbjct 402 CCTCTTCCAAAAGGCTCTCAAATCCAAAACCTTGTC-ATGTCCTGTCT-TCCTGACCTAG 459
Query 588 AACAATGAAGATTGGGTTATGGCTGTCAAGTTTTCAGG-ATCTAAG-TTGAAGCTTTATA 645
|| ||||| |||||||| | ||| |||||||||| || |||| | || | ||| ||||
Sbjct 460 AA-AATGATGATTGGGTCGTTGCTATCAAGTTTTC-GGTATCTCGGCTT-ATGCTATATA 516
Query 646 GACATAACAAAGACTTTCGGTGGATCGATATCGAAACCA--C----GCATGAGTCTATAA 699
| ||| |||||||| |||||||||||||||||||||| | |||||||||||||
Sbjct 517 GGCAT---AAAGACTTACGGTGGATCGATATCGAAACCACGCATGGGCATGAGTCTATAT 573
Query 700 GCCC-TCATTCCAGTCTCATGTATTCTAAGAAAGATCAAAGGTTCTACGTTCCAACTCCT 758
|||| | | || ||||||||||| ||||||||||||||||| || ||| ||||||||||
Sbjct 574 GCCCAT-ACTCAAGTCTCATGTACTCTAAGAAAGATCAAAGATTTTACACTCCAACTCCT 632
Query 759 GGAT-GCAAT-TACTTGTGCTCCTTTGATCTCAACTTCAAGGAGAAGGATAAGCTCGAGT 816
|| | || | ||||||||||| |||| |||||||||||| ||||| || ||| | |||
Sbjct 633 GG-TGGC-GTATACTTGTGCTCATTTGGTCTCAACTTCAAAGAGAAAGACGAGCCCAAGT 690
Query 817 TTG--TCGAGGTGCGAAAAACAGATCTTCCT-AAGTATGA-ATTGTTCGAGTT-TATGGA 871
|| | | || ||||| |||||||||| || ||| | |||| |||||| | |||
Sbjct 691 ATGATTTAATTTG-TAAAAA-AGATCTTCCTCAA-TAT-ATGTTGTACGAGTTGGA-GGA 745
Query 872 GATAAATTCCTTTACCAGGACAGACCA-CATGGTGGAGTCATCC-TCCGGTGAACAATTC 929
||| ||||| |||||||||||||| || | | ||||||||| || ||||| |||||||||
Sbjct 746 GATGAATTCGTTTACCAGGACAGATCATC-TAGTGGAGTCA-CCTTCCGGGGAACAATTC 803
Query 930 CTTATCTCATGGTACTATGGGGACGAGTGTAAACTTAATTACAAAGAGTTAACAGTCATT 989
|| |||||||||||||| || ||||| | || | | | ||| ||||| |
Sbjct 804 CTCATCTCATGGTACTACGGAGACGA--CT----TTGAGT-C--AGA---CGCAGTCGTG 851
Query 990 CACAACACAAAACAATTCAAGGTGTTTAGAGAGAAAGAAGA-GTTAACCGATAGAAAAAC 1048
||||| ||||| | ||| |||||||| |||| ||||| | ||| | | | || | ||
Sbjct 852 CACAAAACAAAGCGGTTCTTGGTGTTTAAAGAGCAAGAAAAGGTT-A-C-A-AG--AGAC 905
Query 1049 AAA-ATTCATGTCTTACACCGAAAACATTGGAGATCTTTGTATTTTTCTTGGACATGGTG 1107
||| | | |||| |||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 906 AAAGA-T-ATGTATTACACTGAAAATATTGGAGATCTTTGTATTTTTCTTGGACATGGTG 963
Query 1108 AAGCTTTGTGTATCCCAGCGAGCACCAT-TCCTGGTCTAAAGCCTAATTGCATCTATTTC 1166
|| || ||||| ||||||| ||| | | ||| ||||| |||||||||||||||||||||
Sbjct 964 AACCTATGTGTGTCCCAGCAAGCTCG-TCTCCAGGTCTTAAGCCTAATTGCATCTATTTC 1022
Query 1167 GCGGGACATAACTATGGTGTTTTCGATATCACCACCCAAACT-TGCTA-TCTCTTCTCCA 1224
||||||||||||| ||||||||||||||||||| ||||||| | | | |||||||| ||
Sbjct 1023 GCGGGACATAACTTTGGTGTTTTCGATATCACCTCCCAAACAAT-C-ACTCTCTTCTACA 1080
Query 1225 CCGATGAAGGTCTGCTAAGCTCCACT-CAATTTCCTT-CGTGGCCTCATCCACTT-TCGC 1281
| || ||||||| |||| |||||| || ||||||| | |||||||||||| || || |
Sbjct 1081 CAGAGGAAGGTCCATTAAGATCCACTGCA-TTTCCTTTC-TGGCCTCATCCA-TTCTCAC 1137
Query 1282 TCACTCCTA 1290
|||||||||
Sbjct 1138 TCACTCCTA 1146
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52678808835
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5