BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G46150.2
Length=1689
Score E
Sequences producing significant alignments: (Bits) Value
Ahg948334 jgi|Araly1|948334|scaffold_800221.1 1781 0.0
Ahg948335 jgi|Araly1|948335|scaffold_800222.1 477 1e-133
> Ahg948334 jgi|Araly1|948334|scaffold_800221.1
Length=1077
Score = 1781 bits (964), Expect = 0.0
Identities = 1030/1063 (97%), Gaps = 0/1063 (0%)
Strand=Plus/Plus
Query 159 GAGAGGGGATAATGATGGAAGTGGAAGGATCGATGAATCGTGCTCCTGATCAATCATCCT 218
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 15 GAGAGGGGACAATGATGGAAGTGGAAGGATCGATGAATCGTGCTCCTGATCAATCATCCT 74
Query 219 TCTTACGATCAAGACGATCCAAAGCTCTGTATCAGTTTAAGCAGCAGAAACTCCCAGCTT 278
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 TCTTACGATCGAGACGATCCAAAGCTCTGTATCAGTTTAAGCAGCAGAAACTCCCAGCTT 134
Query 279 GTAAGCCAGTCTTAACACCAATATCGGTTATAACAGTGTTTATGTTAATGGGTTTTGTTT 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 135 GTAAGCCAGTCTTAACACCAATATCGGTTATAACAGTGTTTATGTTAATGGGTTTTGTTT 194
Query 339 TCATTCCCATTGGTCTCATTACTCTTCGTGCTTCTCGTGATGCTATTGAAATTATAGACC 398
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 195 TCATTCCCATTGGTCTCATTACTCTTCGTGCTTCTCGTAATGCTATTGAAATTATAGACC 254
Query 399 GGTATGATGTTGAGTGCATTCCTGAAGAATATAGAACCAACAAACTGTTGTATATAACTG 458
|||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
Sbjct 255 GGTATGATGTTGAGTGCATTCCTGAAGAATATAGAACCAACAAACTGTCGTACATAACAG 314
Query 459 ATTCATCTATCCCAAAGAATTGTACGCGCTACTTGAAGGTACAAAAGTATATGAAAGCTC 518
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 315 ATTCATCTATCCCAAAGAATTGTACTCGTTACTTGAAGGTACAAAAGTATATGAAAGCTC 374
Query 519 CCATTTTTATCTACTACCAGCTTGATAACTACTATCAAAACCATCGCCGGTATGTAAAGA 578
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 375 CCATTTTTATCTACTACCAGCTCGATAACTACTATCAAAACCATCGCCGGTATGTAAAGA 434
Query 579 GTAGAAGTGATCAGCAACTATTACATGGACTGGAGTATAGCCACACAAGTTCTTGTGAAC 638
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 435 GTAGAAGTGATCAGCAACTTTTACATGGACTGGAGTATAGCCACACAAGTTCTTGTGAAC 494
Query 639 CCGAGGAGTCATCTAATGGTCTCCCAATTGTTCCTTGTGGGTTAATTGCTTGGAGTATGT 698
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 495 CCGAGGAGTCATCTAATGGTCTCCCGATTGTTCCTTGTGGGTTAATCGCTTGGAGTATGT 554
Query 699 TCAATGATACATTTACGTTTTCTCGCGAAAGAACAAAACTGAATGTGAGCCGGAATAACA 758
||||||||||||||||||||||||| |||||||| |||||||| ||||| ||||||||||
Sbjct 555 TCAATGATACATTTACGTTTTCTCGTGAAAGAACGAAACTGAAGGTGAGTCGGAATAACA 614
Query 759 TTGCGTGGAAGAGTGACCGCGAGCACAAGTTTGGAAAGAATGTGTATCCTATCAATTTCC 818
||||||||||||||||||||||| | |||||||||||||||||||||||| | |||||||
Sbjct 615 TTGCGTGGAAGAGTGACCGCGAGGAAAAGTTTGGAAAGAATGTGTATCCTTTTAATTTCC 674
Query 819 AGAACGGAACTTTGATTGGTGGAGCAAAGTTGGATCCAAAAATTCCACTAAGTGACCAAG 878
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 675 AGAATGGAACTTTGATTGGTGGAGCAAAGTTGGATCCAAAAATTCCACTAAGTGACCAAG 734
Query 879 AGGACTTTATAGTGTGGATGCGAGCAGCTGCTTTACTAAGCTTCCGGAAATTATATGGAA 938
|||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 735 AGGATTTTATAGTGTGGATGCGAGCAGCTGCTTTGCTAAGCTTCCGGAAGTTATATGGAA 794
Query 939 GAATCGAAGAGGACTTGGAACCAGGAAAAGTTGTTGAAGTAAATTTGATGAACAATTACA 998
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 795 GAATCGAAGAGGACTTGGAACCAGGAACCGTTGTTGAAGTAAATTTGATGAACAATTACA 854
Query 999 ACACTTATAGCTTTAGTGGGCAGAAGAAGCTTATTCTCTCCACATCAAATTGGTTAGGAG 1058
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 855 ACACTTATAGCTTTAGTGGGCAGAAGAAGCTTATTCTTTCCACATCAAATTGGTTAGGAG 914
Query 1059 GAAGAAATGATTTCCTGGGTATCACCTATCTTGTCGTTGGTTCCTCTTCCATAGTCATAT 1118
|||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||
Sbjct 915 GAAGAAATGATTTCCTAGGCATCACCTATCTTGTTGTTGGTTCCTCTTCCATAGTCATAT 974
Query 1119 CCATCATCTTCATGTTGCTCCATTTGAAAAATCCAAGGCCATACGGTGACAATTCTTGGA 1178
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||
Sbjct 975 CCATCATCTTCATGTTGCTCCATTTGAAAAATCCAAGGCCTTACGGGGACAATTCGTGGA 1034
Query 1179 ACAAGAAAAGCCTTTCAAGTTGAGAAGCTGTTACATTCTTTCT 1221
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 1035 ACAAGAAAAGCCTTTCAAGTTGAGAAGCTGTTACATTCTTTCT 1077
> Ahg948335 jgi|Araly1|948335|scaffold_800222.1
Length=280
Score = 477 bits (258), Expect = 1e-133
Identities = 277/285 (97%), Gaps = 5/285 (2%)
Strand=Plus/Plus
Query 1245 ACTGGGTGTAAGaaaaaaaaaTGACCAAGGAAATGAGGTTTGTTCAAACATGGGGAGAGG 1304
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 ACTGGGTGTAAGAAAAAAAAATGGCCAAGGAAATGAGGTTTGTTCAAACATGGGGAGAGG 60
Query 1305 TAGCACCAAGGCTTATTGCATCTCACCAGAAACAACAACAGCAATTCTCAGACTTGCCAA 1364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TAGCACCAAGGCTTATTGCATCTCACCAGAAACAACAACAGCAATTCTCAGACTTGCCAA 120
Query 1365 AGCTTGAGACGATTTTTGAAGAAGGATGCTGCGTCGATAGTCTTACTGTTAGGGCGCCGA 1424
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 121 AGCTTGAGACGATTTTTGAAGAAGGATGCTGCGTCGATAGTCTTACTGTTAGGGCACCGA 180
Query 1425 AGCGGATTGTAATCTTTCTTCCTCTTGCACTCTCAATGATTTTGTACATGGTGTTGCACA 1484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AGCGGATTGTAATCTTTCTTCCTCTTGCACTCTCAATGATTTTGTACATGGTGTTGCACA 240
Query 1485 AGAGTATCATAGGTTATTATTGATTTGACTTTGTCTATTGATTTT 1529
|||||||||||||||||| ||||||||| |||||||| ||||
Sbjct 241 AGAGTATCATAGGTTATT---GATTTGACT--GTCTATTGGTTTT 280
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63344077435
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5